1,381 research outputs found
Stellar Disk Truncations: Where do we stand ?
In the light of several recent developments we revisit the phenomenon of
galactic stellar disk truncations. Even 25 years since the first paper on outer
breaks in the radial light profiles of spiral galaxies, their origin is still
unclear. The two most promising explanations are that these 'outer edges'
either trace the maximum angular momentum during the galaxy formation epoch, or
are associated with global star formation thresholds. Depending on their true
physical nature, these outer edges may represent an improved size
characteristic (e.g., as compared to D_25) and might contain fossil evidence
imprinted by the galaxy formation and evolutionary history. We will address
several observational aspects of disk truncations: their existence, not only in
normal HSB galaxies, but also in LSB and even dwarf galaxies; their detailed
shape, not sharp cut-offs as thought before, but in fact demarcating the start
of a region with a steeper exponential distribution of starlight; their
possible association with bars; as well as problems related to the
line-of-sight integration for edge-on galaxies (the main targets for truncation
searches so far). Taken together, these observations currently favour the
star-formation threshold model, but more work is necessary to implement the
truncations as adequate parameters characterising galactic disks.Comment: LaTeX, 10 pages, 6 figures, presented at the "Penetrating Bars
through Masks of Cosmic Dust" conference in South Africa, proceedings
published by Kluwer, and edited by Block, D.L., Freeman, K.C., Puerari, I., &
Groess, R; v3 to match published versio
Anthropic solution to the magnetic muon anomaly: the charged see-saw
We present models of new physics that can explain the muon g-2 anomaly in
accord with with the assumption that the only scalar existing at the weak scale
is the Higgs, as suggested by anthropic selection. Such models are dubbed
"charged see-saw" because the muon mass term is mediated by heavy leptons. The
electroweak contribution to the g-2 gets modified by order one factors, giving
an anomaly of the same order as the observed hint, which is strongly correlated
with a modification of the Higgs coupling to the muon.Comment: 21 pages, many equations despite the first word in the title. v3:
loop function G_WN corrected, conclusions unchange
Correlation functions quantify super-resolution images and estimate apparent clustering due to over-counting
We present an analytical method to quantify clustering in super-resolution
localization images of static surfaces in two dimensions. The method also
describes how over-counting of labeled molecules contributes to apparent
self-clustering and how the effective lateral resolution of an image can be
determined. This treatment applies to clustering of proteins and lipids in
membranes, where there is significant interest in using super-resolution
localization techniques to probe membrane heterogeneity. When images are
quantified using pair correlation functions, the magnitude of apparent
clustering due to over-counting will vary inversely with the surface density of
labeled molecules and does not depend on the number of times an average
molecule is counted. Over-counting does not yield apparent co-clustering in
double label experiments when pair cross-correlation functions are measured. We
apply our analytical method to quantify the distribution of the IgE receptor
(Fc{\epsilon}RI) on the plasma membranes of chemically fixed RBL-2H3 mast cells
from images acquired using stochastic optical reconstruction microscopy (STORM)
and scanning electron microscopy (SEM). We find that apparent clustering of
labeled IgE bound to Fc{\epsilon}RI detected with both methods arises from
over-counting of individual complexes. Thus our results indicate that these
receptors are randomly distributed within the resolution and sensitivity limits
of these experiments.Comment: 22 pages, 5 figure
Implications of the 125 GeV Higgs boson for scalar dark matter and for the CMSSM phenomenology
We study phenomenological implications of the ATLAS and CMS hint of a GeV Higgs boson for the singlet, and singlet plus doublet non-supersymmetric
dark matter models, and for the phenomenology of the CMSSM. We show that in
scalar dark matter models the vacuum stability bound on Higgs boson mass is
lower than in the standard model and the 125 GeV Higgs boson is consistent with
the models being valid up the GUT or Planck scale. We perform a detailed study
of the full CMSSM parameter space keeping the Higgs boson mass fixed to GeV, and study in detail the freeze-out processes that imply the observed
amount of dark matter. After imposing all phenomenological constraints except
for the muon we show that the CMSSM parameter space is divided
into well separated regions with distinctive but in general heavy sparticle
mass spectra. Imposing the constraint introduces severe tension
between the high SUSY scale and the experimental measurements -- only the
slepton co-annihilation region survives with potentially testable sparticle
masses at the LHC. In the latter case the spin-independent DM-nucleon
scattering cross section is predicted to be below detectable limit at the
XENON100 but might be of measurable magnitude in the general case of light dark
matter with large bino-higgsino mixing and unobservably large scalar masses.Comment: 17 pages, 7 figures. v3: same as published versio
The eMERGE Network: A consortium of biorepositories linked to electronic medical records data for conducting genomic studies
<p>Abstract</p> <p>Introduction</p> <p>The eMERGE (electronic MEdical Records and GEnomics) Network is an NHGRI-supported consortium of five institutions to explore the utility of DNA repositories coupled to Electronic Medical Record (EMR) systems for advancing discovery in genome science. eMERGE also includes a special emphasis on the ethical, legal and social issues related to these endeavors.</p> <p>Organization</p> <p>The five sites are supported by an Administrative Coordinating Center. Setting of network goals is initiated by working groups: (1) Genomics, (2) Informatics, and (3) Consent & Community Consultation, which also includes active participation by investigators outside the eMERGE funded sites, and (4) Return of Results Oversight Committee. The Steering Committee, comprised of site PIs and representatives and NHGRI staff, meet three times per year, once per year with the External Scientific Panel.</p> <p>Current progress</p> <p>The primary site-specific phenotypes for which samples have undergone genome-wide association study (GWAS) genotyping are cataract and HDL, dementia, electrocardiographic QRS duration, peripheral arterial disease, and type 2 diabetes. A GWAS is also being undertaken for resistant hypertension in ≈2,000 additional samples identified across the network sites, to be added to data available for samples already genotyped. Funded by ARRA supplements, secondary phenotypes have been added at all sites to leverage the genotyping data, and hypothyroidism is being analyzed as a cross-network phenotype. Results are being posted in dbGaP. Other key eMERGE activities include evaluation of the issues associated with cross-site deployment of common algorithms to identify cases and controls in EMRs, data privacy of genomic and clinically-derived data, developing approaches for large-scale meta-analysis of GWAS data across five sites, and a community consultation and consent initiative at each site.</p> <p>Future activities</p> <p>Plans are underway to expand the network in diversity of populations and incorporation of GWAS findings into clinical care.</p> <p>Summary</p> <p>By combining advanced clinical informatics, genome science, and community consultation, eMERGE represents a first step in the development of data-driven approaches to incorporate genomic information into routine healthcare delivery.</p
Three Ways of Combining Genotyping and Resequencing in Case-Control Association Studies
We describe three statistical results that we have found to be useful in case-control genetic association testing. All three involve combining the discovery of novel genetic variants, usually by sequencing, with genotyping methods that recognize previously discovered variants. We first consider expanding the list of known variants by concentrating variant-discovery in cases. Although the naive inclusion of cases-only sequencing data would create a bias, we show that some sequencing data may be retained, even if controls are not sequenced. Furthermore, for alleles of intermediate frequency, cases-only sequencing with bias-correction entails little if any loss of power, compared to dividing the same sequencing effort among cases and controls. Secondly, we investigate more strongly focused variant discovery to obtain a greater enrichment for disease-related variants. We show how case status, family history, and marker sharing enrich the discovery set by increments that are multiplicative with penetrance, enabling the preferential discovery of high-penetrance variants. A third result applies when sequencing is the primary means of counting alleles in both cases and controls, but a supplementary pooled genotyping sample is used to identify the variants that are very rare. We show that this raises no validity issues, and we evaluate a less expensive and more adaptive approach to judging rarity, based on group-specific variants. We demonstrate the important and unusual caveat that this method requires equal sample sizes for validity. These three results can be used to more efficiently detect the association of rare genetic variants with disease
The Peter Pan paradigm
Genetic and environmental agents that disrupt organogenesis are numerous and well described. Less well established, however, is the role of delay in the developmental processes that yield functionally immature tissues at birth. Evidence is mounting that organs do not continue to develop postnatally in the context of these organogenesis insults, condemning the patient to utilize under-developed tissues for adult processes. These poorly differentiated organs may appear histologically normal at birth but with age may deteriorate revealing progressive or adult-onset pathology. The genetic and molecular underpinning of the proposed paradigm reveals the need for a comprehensive systems biology approach to evaluate the role of maternal-fetal environment on organogenesis
The Local Origin of the Tibetan Pig and Additional Insights into the Origin of Asian Pigs
BACKGROUND: The domestic pig currently indigenous to the Tibetan highlands is supposed to have been introduced during a continuous period of colonization by the ancestors of modern Tibetans. However, there is no direct genetic evidence of either the local origin or exotic migration of the Tibetan pig. METHODS AND FINDINGS: We analyzed mtDNA hypervariable segment I (HVI) variation of 218 individuals from seven Tibetan pig populations and 1,737 reported mtDNA sequences from domestic pigs and wild boars across Asia. The Bayesian consensus tree revealed a main haplogroup M and twelve minor haplogroups, which suggested a large number of small scale in situ domestication episodes. In particular, haplogroups D1 and D6 represented two highly divergent lineages in the Tibetan highlands and Island Southeastern Asia, respectively. Network analysis of haplogroup M further revealed one main subhaplogroup M1 and two minor subhaplogroups M2 and M3. Intriguingly, M2 was mainly distributed in Southeastern Asia, suggesting for a local origin. Similar with haplogroup D6, M3 was mainly restricted in Island Southeastern Asia. This pattern suggested that Island Southeastern Asia, but not Southeastern Asia, might be the center of domestication of the so-called Pacific clade (M3 and D6 here) described in previous studies. Diversity gradient analysis of major subhaplogroup M1 suggested three local origins in Southeastern Asia, the middle and downstream regions of the Yangtze River, and the Tibetan highlands, respectively. CONCLUSIONS: We identified two new origin centers for domestic pigs in the Tibetan highlands and in the Island Southeastern Asian region
Predictive properties of the A-TAC inventory when screening for childhood-onset neurodevelopmental problems in a population-based sample
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