Improved models of upper-level wind for several astronomical observatories

An understanding of wind speed and direction as a function of height are critical to the proper modeling of atmospheric turbulence. We have used radiosonde data from launch sites near significant astronomical observatories and created mean profiles of wind speed and direction and have also computed Richardson number profiles. Using data from the last 30 years, we extend the 1977 Greenwood wind profile to include parameters that show seasonal variations and differences in location. The added information from our models is useful for the design of adaptive optics systems and other imaging systems. Our analysis of the Richardson number suggests that persistent turbulent layers may be inferred when low values are present in our long term averaged data. Knowledge of the presence of these layers may help with planning for adaptive optics and laser communications.Comment: 21 pages, 15 Figures, 8 table

A phylum-wide survey reveals multiple independent gains of head regeneration in nemertea

Animals vary widely in their ability to regenerate, suggesting that regenerative ability has a rich evolutionary history. However, our understanding of this history remains limited because regenerative ability has only been evaluated in a tiny fraction of species. Available comparative regeneration studies have identified losses of regenerative ability, yet clear documentation of gains is lacking. We assessed ability to regenerate heads and tails either through our own experiments or from literature reports for 35 species of Nemertea spanning the diversity of the phylum, including representatives of 10 families and all three orders. We generated a phylogenetic framework using sequence data to reconstruct the evolutionary history of head and tail regenerative ability across the phylum and found that all evaluated species can remake a posterior end but surprisingly few could regenerate a complete head. Our analysis reconstructs a nemertean ancestor unable to regenerate a head and indicates independent gains of head regenerative ability in at least four separate lineages, with one of these gains taking place as recently as the last 10-15 Myr. Our study highlights nemerteans as a valuable group for studying evolution of regeneration and identifying mechanisms associated with repeated gains of regenerative ability.Fil: Zattara, Eduardo Enrique. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Patagonia Norte. Instituto de Investigaciones en Biodiversidad y Medioambiente. Universidad Nacional del Comahue. Centro Regional Universidad Bariloche. Instituto de Investigaciones en Biodiversidad y Medioambiente; Argentina. National Museum of Natural History; Estados Unidos. University of Maryland; Estados UnidosFil: Fernández Álvarez, Fernando Ángel. Consejo Superior de Investigaciones Científicas. Instituto de Ciencias del Mar; EspañaFil: Hiebert, Terra. University of Oregon; Estados UnidosFil: Bely, Alexandra. University of Maryland; Estados UnidosFil: Norenburg, Jon L.. National Museum of Natural History; Estados Unido

Recombination Rate Coefficients for KLL Di-electronic Satellite Lines of Fe XXV and Ni XXVII

The unified method for total electron-ion recombination is extended to study the dielectronic satellite (DES) lines. These lines, formed from radiative decay of autoionizing states, are highly sensitive temperature diagnostics of astrophysical and laboratory plasma sources. The computation of the unified recombination rates is based on the relativistic Breit-Pauli R-matrix method and close coupling approximation. Extending the theoretical formulation developed earlier we present recombination rate coefficients for the 22 satellite lines of KLL complexes of helium-like Fe XXV and Ni XXVII. The isolated resonance approximation, commonly used throughout plasma modeling, treats these resonances essentially as bound features except for dielectronic capture into, and autoionization out of, these levels. A line profile or cross section shape is often assumed. On the other hand, by including the coupling between the autoionizing and continuum channels, the unified method gives the intrinsic spectrum of DES lines which includes not only the energies and strengths, but also the natural line or cross section shapes. A formulation is presented to derive autoionization rates from unified resonance strengths and enable correspondence with the isolated resonance approximation. While the rates compare very well with existing rates for the strong lines to <20%, the differences for weaker DES lines are larger. We also illustrate the application of the present results to the analysis of K ALPHA complexes observed in high-temperature X-ray emission spectra of Fe XXV and Ni XXVII. There are considerable differences with previous results in the total KLL intensity for Fe XXV at temperatures below the temperature of maximum abundance in coronal equilibrium. (Abbreviated Abstract)Comment: 21 pages, 5 figures, to appear in Physica Script

Excitation of the 3.071mm Hyperfine Line in Li-Like 57-Fe in Astrophysical Plasmas

As noted first by Sunyaev & Churazov (1984), the 3.071 mm hyperfine line from $^{57}Fe^{+23}$ might be observable in astrophysical plasmas. We assess the atomic processes which might contribute to the excitation of this line. We determine the intensity of the hyperfine line from an isothermal, coronal plasma in collisional ionization equilibrium and for a coronal plasma cooling isobarically due to its own radiation. Comparisons of the hyperfine line to other lines emitted by the same ion, Fe$^{+23}$, are shown to be useful for deriving the isotopic fraction of $^{57}$Fe. We calculate the ratios of the hyperfine line to the 2s--2p EUV lines at 192 \AA and 255 \AA, and the 2s--3p X-ray doublet at 10.6 \AA.Comment: 28 pages text+figures, Accepted to ApJ in Jan 98, also at http://www.astro.virginia.edu/~nld2n/research.htm

K-shell dielectronic resonances in photoabsorption: differential oscillator strengths for Li-like C IV, O VI, and Fe XXIV

Recently X-ray photoabsorption in KLL resonances of O VI was predicted [Pradhan, Astrophys.J. Lett. 545, L165 (2000)], and detected by the Chandra X-ray Observatory [Lee et al, Astrophys. J. {\it Lett.}, submitted]. The required resonance oscillator strengths f_r, are evaluated in terms of the differential oscillator strength df/de that relates bound and continuum absorption. We present the f_r values from radiatively damped and undamped photoionization cross sections for Li-like C,O, and Fe calculated using relativistic close coupling Breit-Pauli R-matrix method. The KLL resonances of interest here are: 1s2p (^3P^o) 2s [^4P^o_{1/2,3/2}, ^2P^o_{1/2,3/2}] and 1s2p (^1P^o) 2s [^2P^o_{1/2,3/2}]. The KLL photoabsorption resonances in Fe XXIV are fully resolved up to natural autoionization profiles for the first time. It is demonstrated that the undamped f_r independently yield the resonance radiative decay rates, and thereby provide a precise check on the resolution of photoionization calculations in general. The predicted photoabsorption features should be detectable by the X-ray space observatories and enable column densities in highly ionized astrophysical plasmas to be determined from the calculated f_r. The dielectronic satellites may appear as redward broadening of resonances lines in emission and absorption.Comment: 9 pages, 2 figurs, Phys. Rev. A, Rapid Communication (submitted

On the importance of satellite lines to the He-like K ALPHA complex and the G ratio for calcium, iron, and nickel

New, more detailed calculations of the emission spectra of the He-like K ALPHA complex of calcium, iron and nickel have been carried out using data from both distorted-wave and R-matrix calculations. The value of the GD ratio (an extended definition of the G ratio that accounts for the effect of resolved and unresolved satellite lines) is significantly enhanced at temperatures below the temperature of He-like maximum abundance. Furthermore it is shown that satellite lines are important contributors to the GD ratio such that GD/G>1 at temperatures well above the temperature of maximum abundance. These new calculations demonstrate, with an improved treatment of the KLn (n>=3) satellite lines, that K ALPHA satellite lines need to be included in models of He like spectra even at relatively high temperatures. The excellent agreement between spectra and line ratios calculated from R-matrix and distorted-wave data also confirms the validity of models based on distorted-wave data for highly charged systems, provided the effect of resonances are taken into account as independent processes.Comment: 12 pages, 5 figures, to appear in Monthly Notices of the Royal Astronomical Society. The definitive version is available at www.blackwell-synergy.co

Transcriptome characterization via 454 pyrosequencing of the annelid Pristina leidyi, an emerging model for studying the evolution of regeneration

Background: The naid annelids contain a number of species that vary in their ability to regenerate lost body parts, making them excellent candidates for evolution of regeneration studies. However, scant sequence data exists to facilitate such studies. We constructed a cDNA library from the naid Pristina leidyi, a species that is highly regenerative and also reproduces asexually by fission, using material from a range of regeneration and fission stages for our library. We then sequenced the transcriptome of P. leidyi using 454 technology. Results: 454 sequencing produced 1,550,174 reads with an average read length of 376 nucleotides. Assembly of 454 sequence reads resulted in 64,522 isogroups and 46,679 singletons for a total of 111,201 unigenes in this transcriptome. We estimate that over 95% of the transcripts in our library are present in our transcriptome. 17.7% of isogroups had significant BLAST hits to the UniProt database and these include putative homologs of a number of genes relevant to regeneration research. Although many sequences are incomplete, the mean sequence length of transcripts (isotigs) is 707 nucleotides. Thus, many sequences are large enough to be immediately useful for downstream applications such as gene expression analyses. Using in situ hybridization, we show that two Wnt/β-catenin pathway genes (homologs of frizzled and β-catenin) present in our transcriptome are expressed in the regeneration blastema of P. leidyi, demonstrating the usefulness of this resource for regeneration research. Conclusions: 454 sequencing is a rapid and efficient approach for identifying large numbers of genes in an organism that lacks a sequenced genome. This transcriptome dataset will be a valuable resource for molecular analyses of regeneration in P. leidyi and will serve as a starting point for comparisons to non-regenerating naids. It also contributes significantly to the still limited genomic resources available for annelids and lophotrochozoans more generally.https://doi.org/10.1186/1471-2164-13-28

Growth and fermentation patterns of Saccharomyces cerevisiae under different ammonium concentrations and its implications in winemaking industry

To study the effects of assimilable nitrogen concentration on growth profile and on fermentation kinetics of Saccharomyces cerevisiae. Aims: To study the effects of assimilable nitrogen concentration on growth profile and on fermentation kinetics of Saccharomyces cerevisiae. Methods and Results: Saccharomyces cerevisiae was grown in batch in a defined medium with glucose (200 g l−1) as the only carbon and energy source, and nitrogen supplied as ammonium sulphate or phosphate forms under different concentrations. The initial nitrogen concentration in the media had no effect on specific growth rates of the yeast strain PYCC 4072. However, fermentation rate and the time required for completion of the alcoholic fermentation were strongly dependent on nitrogen availability. At the stationary phase, the addition of ammonium was effective in increasing cell population, fermentation rate and ethanol. Conclusions: The yeast strain required a minimum of 267 mg N l−1 to attain complete dryness of media, within the time considered for the experiments. Lower levels were enough to support growth, although leading to sluggish or stuck fermentation. Significance and Impact of the Study: The findings reported here contribute to elucidate the role of nitrogen on growth and fermentation performance of wine yeast. This information might be useful to the wine industry where excessive addition of nitrogen to prevent sluggish or stuck fermentation might have a negative impact on wine stability and quality

CHIANTI - an Atomic Database for Emission Lines. Paper VI: Proton Rates and Other Improvements

The CHIANTI atomic database contains atomic energy levels, wavelengths, radiative transition probabilities and electron excitation data for a large number of ions of astrophysical interest. Version 4 has been released, and proton excitation data is now included, principally for ground configuration levels that are close in energy. The fitting procedure for excitation data, both electrons and protons, has been extended to allow 9 point spline fits in addition to the previous 5 point spline fits. This allows higher quality fits to data from close-coupling calculations where resonances can lead to significant structure in the Maxwellian-averaged collision strengths. The effects of photoexcitation and stimulated emission by a blackbody radiation field in a spherical geometry on the level balance equations of the CHIANTI ions can now be studied following modifications to the CHIANTI software. With the addition of H I, He I and N I, the first neutral species have been added to CHIANTI. Many updates to existing ion data-sets are described, while several new ions have been added to the database, including Ar IV, Fe VI and Ni XXI. The two-photon continuum is now included in the spectral synthesis routines, and a new code for calculating the relativistic free-free continuum has been added. The treatment of the free-bound continuum has also been updated.Comment: CHIANTI is available at http://wwwsolar.nrl.navy.mil/chianti.htm