The Cut & Enhance method : selecting clusters of galaxies from the SDSS commissioning data

We describe an automated method, the Cut & Enhance method (CE) for detecting clusters of galaxies in multi-color optical imaging surveys. This method uses simple color cuts, combined with a density enhancement algorithm, to up-weight pairs of galaxies that are close in both angular separation and color. The method is semi-parametric since it uses minimal assumptions about cluster properties in order to minimize possible biases. No assumptions are made about the shape of clusters, their radial profile or their luminosity function. The method is successful in finding systems ranging from poor to rich clusters of galaxies, of both regular and irregular shape. We determine the selection function of the CE method via extensive Monte Carlo simulations which use both the real, observed background of galaxies and a randomized background of galaxies. We use position shuffled and color shuffled data to perform the false positive test. We have also visually checked all the clusters detected by the CE method. We apply the CE method to the 350 deg^2 of the SDSS (Sloan Digital Sky Survey) commissioning data and construct a SDSS CE galaxy cluster catalog with an estimated redshift and richness for each cluster. The CE method is compared with other cluster selection methods used on SDSS data such as the Matched Filter (Postman et al. 1996, Kim et al. 2001), maxBCG technique (Annis et al. 2001) and Voronoi Tessellation (Kim et al. 2001). The CE method can be adopted for cluster selection in any multi-color imaging surveys.Comment: 62 pages, 32 figures, Accepted for publication in the Astronomical Journal, "the CE galaxy cluster catalog can be downloaded from, http://astrophysics.phys.cmu.edu/~tomo/ce/

The Angular Clustering of Galaxy Pairs

We identify close pairs of galaxies from 278 deg^2 of Sloan Digital Sky Survey commissioning imaging data. The pairs are drawn from a sample of 330,041 galaxies with 18 < r^* < 20. We determine the angular correlation function of galaxy pairs, and find it to be stronger than the correlation function of single galaxies by a factor of 2.9 +/- 0.4. The two correlation functions have the same logarithmic slope of 0.77. We invert Limber's equation to estimate the three-dimensional correlation functions; we find clustering lengths of r_0= 4.2 +/- 0.4 h^{-1} Mpc for galaxies and 7.8 +/- 0.7 h^{-1} Mpc for galaxy pairs. These results agree well with the global richness dependence of the correlation functions of galaxy systems.Comment: 12 pages. ApJ, in pres

Composite Luminosity Functions Based on the Sloan Digital Sky Survey "Cut & Enhance" Galaxy Cluster Catalog

We present here results on the composite luminosity functions of galaxies in the clusters of galaxies selected from the SDSS Cut and Enhance cluster catalog (CE; Goto et al. 2001). We construct the composite luminosity function in the five SDSS bands, u,g,r,i and z, using 204 CE clusters ranging from z=0.02 to z=0.25. We use photometric redshifts to construct composite luminosity functions. The robustness of the weighting scheme was tested using Monte Carlo simulation. We find the slope of composite LFs become flatter toward redder color band. Comparing with field LFs of SDSS (Blanton et al. 2001), cluster LFs have brighter characteristic magnitude and flatter slopes in g, r, i and z bands. These results are consistent with the hypothesis that the cluster LF has two distinct underlying populations i.e. the bright end of the LF is dominated by bright early types that follow a gaussian--like luminosity distribution, while the faint--end of the cluster LF is a steep power--law like function dominated by star--forming (bluer) galaxies. We also study the composite luminosity functions for early--type and late--type galaxies using profile fits, a concentration parameter and u-r color to classify galaxy morphology. The strong dependence of LF on galaxy morphology is found.The faint end slope of the LF is always flatter for early--type galaxies than late--type regardless of passband and methodology. These results are consistent with the hypothesis that the cluster region are dominated by bright elliptical galaxies.Comment: 21 pages, 5 figures, PASJ, 54, 515, miner typos fixe

The Angular Correlation Function of Galaxies from Early SDSS Data

The Sloan Digital Sky Survey is one of the first multicolor photometric and spectroscopic surveys designed to measure the statistical properties of galaxies within the local Universe. In this Letter we present some of the initial results on the angular 2-point correlation function measured from the early SDSS galaxy data. The form of the correlation function, over the magnitude interval 18<r*<22, is shown to be consistent with results from existing wide-field, photographic-based surveys and narrower CCD galaxy surveys. On scales between 1 arcminute and 1 degree the correlation function is well described by a power-law with an exponent of ~ -0.7. The amplitude of the correlation function, within this angular interval, decreases with fainter magnitudes in good agreement with analyses from existing galaxy surveys. There is a characteristic break in the correlation function on scales of approximately 1-2 degrees. On small scales, < 1', the SDSS correlation function does not appear to be consistent with the power-law form fitted to the 1'< theta <0.5 deg data. With a data set that is less than 2% of the full SDSS survey area, we have obtained high precision measurements of the power-law angular correlation function on angular scales 1' < theta < 1 deg, which are robust to systematic uncertainties. Because of the limited area and the highly correlated nature of the error covariance matrix, these initial results do not yet provide a definitive characterization of departures from the power-law form at smaller and larger angles. In the near future, however, the area of the SDSS imaging survey will be sufficient to allow detailed analysis of the small and large scale regimes, measurements of higher-order correlations, and studies of angular clustering as a function of redshift and galaxy type

Identification of a cytokine network sustaining neutrophil and Th17 activation in untreated early rheumatoid arthritis

© 2010 Cascão et al.; licensee BioMed Central Ltd. This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.Introduction: Rheumatoid arthritis (RA) is a chronic inflammatory autoimmune disease characterized by sustained synovitis. Recently, several studies have proposed neutrophils and Th17 cells as key players in the onset and perpetuation of this disease. The main goal of this work was to determine whether cytokines driving neutrophil and Th17 activation are dysregulated in very early rheumatoid arthritis patients with less than 6 weeks of disease duration and before treatment (VERA). Methods: Cytokines related to neutrophil and Th17 activation were quantified in the serum of VERA and established RA patients and compared with other very early arthritis (VEA) and healthy controls. Synovial fluid (SF) from RA and osteoarthritis (OA) patients was also analyzed. Results: VERA patients had increased serum levels of cytokines promoting Th17 polarization (IL-1b and IL-6), as well as IL-8 and Th17-derived cytokines (IL-17A and IL-22) known to induce neutrophil-mediated inflammation. In established RA this pattern is more evident within the SF. Early treatment with methotrexate or corticosteroids led to clinical improvement but without an impact on the cytokine pattern. Conclusions: VERA patients already display increased levels of cytokines related with Th17 polarization and neutrophil recruitment and activation, a dysregulation also found in SF of established RA. 0 Thus, our data suggest that a cytokine-milieu favoring Th17 and neutrophil activity is an early event in RA pathogenesis.This work was supported by a grant from Sociedade Portuguesa de Reumatologia/Schering-Plough 2005. RAM and RC were funded by Fundação para a Ciência e a Tecnologia (FCT) SFRH/BD/30247/2006 and SFRH/BD/40513/2007, respectively. MMS-C was funded by Marie Curie Intra-European Fellowship PERG-2008-239422 and a EULAR Young Investigator Award

Optical and Radio Properties of Extragalactic Sources Observed by the FIRST and SDSS Surveys

We discuss the optical and radio properties of 30,000 FIRST sources positionally associated with an SDSS source in 1230 deg$^2$ of sky. The majority (83%) of the FIRST sources identified with an SDSS source brighter than r=21 are optically resolved. We estimate an upper limit of 5% for the fraction of quasars with broad-band optical colors indistinguishable from those of stars. The distribution of quasars in the radio flux -- optical flux plane supports the existence of the "quasar radio-dichotomy"; 8% of all quasars with i<18.5 are radio-loud and this fraction seems independent of redshift and optical luminosity. The radio-loud quasars have a redder median color by 0.08 mag, and a 3 times larger fraction of objects with red colors. FIRST galaxies represent 5% of all SDSS galaxies with r<17.5, and 1% for r<20, and are dominated by red galaxies. Magnitude and redshift limited samples show that radio galaxies have a different optical luminosity distribution than non-radio galaxies selected by the same criteria; when galaxies are further separated by their colors, this result remains valid for both blue and red galaxies. The distributions of radio-to-optical flux ratio are similar for blue and red galaxies in redshift-limited samples; this similarity implies that the difference in their luminosity functions, and resulting selection effects, are the dominant cause for the preponderance of red radio galaxies in flux-limited samples. We confirm that the AGN-to-starburst galaxy number ratio increases with radio flux, and find that radio emission from AGNs is more concentrated than radio emission from starburst galaxies (abridged).Comment: submitted to AJ, color gif figures, PS figures available from [email protected]

The Morphological Butcher-Oemler effect in the SDSS Cut&Enhance Galaxy Cluster Catalog

We investigate the evolution of the fractions of late type cluster galaxies as a function of redshift, using one of the largest, most uniform cluster samples available. The sample consists of 514 clusters of galaxies in the range 0.02<z<0.3 from the Sloan Digital Sky Survey Cut & Enhance galaxy cluster catalog. This catalog was created using a single automated cluster finding algorithm on uniform data from a single telescope, with accurate CCD photometry, thus, minimizing selection biases. We use four independent methods to analyze the evolution of the late type galaxy fraction. Specifically, we select late type galaxies based on: restframe g-r color, u-r color, galaxy profile fitting and concentration index. The first criterion corresponds to the one used in the classical Butcher-Oemler analyses. The last three criteria are more sensitive to the morphological type of the galaxies. In all four cases, we find an increase in the fraction of late type galaxies with increasing redshift, significant at the 99.9% level. The results confirm that cluster galaxies do change colors with redshift (the Butcher-Oemler effect) and, in addition, they change their morphology to later-type toward higher redshift -- indicating a morphological equivalent of the Butcher-Oemler effect. We also find a tendency of richer clusters to have lower fractions of late type galaxies. The trend is consistent with a ram pressure stripping model, where richer clusters have more effective ram pressure due to their higher temperature.Comment: 44 pages, 15 figures, accepted for PAS

Transgenic expression of the dicotyledonous pattern recognition receptor EFR in rice leads to ligand-dependent activation of defense responses

Plant plasma membrane localized pattern recognition receptors (PRRs) detect extracellular pathogen-associated molecules. PRRs such as Arabidopsis EFR and rice XA21 are taxonomically restricted and are absent from most plant genomes. Here we show that rice plants expressing EFR or the chimeric receptor EFR::XA21, containing the EFR ectodomain and the XA21 intracellular domain, sense both Escherichia coli- and Xanthomonas oryzae pv. oryzae (Xoo)-derived elf18 peptides at sub-nanomolar concentrations. Treatment of EFR and EFR::XA21 rice leaf tissue with elf18 leads to MAP kinase activation, reactive oxygen production and defense gene expression. Although expression of EFR does not lead to robust enhanced resistance to fully virulent Xoo isolates, it does lead to quantitatively enhanced resistance to weakly virulent Xoo isolates. EFR interacts with OsSERK2 and the XA21 binding protein 24 (XB24), two key components of the rice XA21-mediated immune response. Rice-EFR plants silenced for OsSERK2, or overexpressing rice XB24 are compromised in elf18-induced reactive oxygen production and defense gene expression indicating that these proteins are also important for EFR-mediated signaling in transgenic rice. Taken together, our results demonstrate the potential feasibility of enhancing disease resistance in rice and possibly other monocotyledonous crop species by expression of dicotyledonous PRRs. Our results also suggest that Arabidopsis EFR utilizes at least a subset of the known endogenous rice XA21 signaling components