Detection of abnormal recordings in Irish milk recorded data

peer-reviewedThe objective of this study was to detect abnormal recordings of milk yield, fat concentration and protein concentration in Irish milk-recorded data. The data consisted of 14,956 records from both commercial and experimental herds with 92% of the recordings recorded manually and the remainder recorded electronically. The method used in this paper was a modified version of the method employed by the Animal Improvement Programs Laboratory in Maryland, USA and conformed with the guidelines outlined by the International Committee of Animal Recording. The results illustrate the effectiveness of detecting abnormal recordings in Irish milk records. The method described in this paper, defines the upper and lower limits for each production trait and these limits along with the slope parameters were used to determine if a recording was abnormal or not. Three percent of milk yield recordings, 5% of fat concentration recordings and less than 1% of protein concentration recordings were found to be abnormal. The proportion of values declared abnormal in manually recorded and electronically recorded data were examined and found to be significantly different for fat concentration

Male sexually coercive behaviour drives increased swimming efficiency in female guppies

Sexual coercion of females by males is widespread across sexually reproducing species. It stems from a conflict of interest over reproduction and exerts selective pressure on both sexes. For females, there is often a significant energetic cost of exposure to male sexually coercive behaviours. Our understanding of the efficiency of female resistance to male sexually coercive behaviour is key to understanding how sexual conflict contributes to population level dynamics and ultimately to the evolution of sexually antagonistic traits. Overlooked within this context are plastic physiological responses of traits within the lifetime of females that could moderate the energetic cost imposed by coercive males. Here, we examined whether conflict over the frequency and timing of mating between male and female guppies Poecilia reticulata can induce changes in swimming performance and aerobic capacity in females as they work to escape harassment by males. Females exposed to higher levels of harassment over a 5-month period used less oxygen to swim at a given speed, but displayed no difference in resting metabolic rate, maximal metabolic rate, maximal sustained swimming speed or aerobic scope compared to females receiving lower levels of harassment. The observed increase in swimming efficiency is at least partially related to differences in swimming mechanics, likely brought on by a training effect of increased activity, as highly harassed females spent less time performing pectoral fin-assisted swimming. Sexual conflict results in sexually antagonistic traits that impose a variety of costs, but our results show that females can reduce costs through phenotypic plasticity. It is also possible that phenotypic plasticity in swimming physiology or mechanics in response to sexual coercion can potentially give females more control over matings and affect which male traits are under selection

Measurements of Residual Stresses in Cold-Rolled 304 Stainless Steel Plates Using X-Ray Diffraction with Rietveld Refinement Method

The determination of the residual stresses using X-ray powder diffraction in a series of cold-rolled 304 stainless steel plates, deforming 0, 34, 84, 152, 158, 175 and 196 % reduction in thickness has been carried out. The diffraction data were analyzed using the Rietveld structure refinement method. The analysis shows that for all specimens, the martensite particles are closely in compression and the austenite matrix is in tension. Both the martensite and austenite, for a sample reducing 34% in thickness (containing of about 1% martensite phase) the average lattice strains are anisotropic and decrease approximately exponential with an increase in the corresponding percent reduction (essentially phase content). It is shown that this feature can be qualitatively understood by taking into consideration the thermal expansion mismatch between the martensite and austenite grains. Also, for all cold-rolled stainless steel specimens, the diffraction peaks are broader than the unrolled one (instrumental resolution), indicating that the strains in these specimens are inhomogeneous. From an analysis of the refined peak shape parameters, the average root-mean square strain, which describes the distribution of the inhomogeneous strain field, was predicted. The average residual stresses in cold-rolled 304 stainless steel plates showed a combination effect of hydrostatic stresses of the martensite particles and the austenite matrix.Received: 14 March 2008; Revised: 13 October 2008; Accepted: 6 November 200

Replacement strategies to maximise profiltability in dairying.

End of Project ReportsThe overall objective of this project was to develop a dynamic model which would determine the optimum replacement rates for dairy herds under an Irish system of production. A model was designed and applied to the Irish dairy replacement problem, which included in the decision making process production, fertility, calving interval, seasonality, month of calving and various economic factors. The output from the Hierarchic model is a series of rankings. The dynamic programming approach can enable one to inform a farmer which cows in the herd should be replaced, on the basis that a replacement heifer( and its future successors) are expected to be more profitable than the current cow. The optimum replacement rate was 17.8% from this analysis.European Union Structural Fund (EAGGF

Integrating acquisitions : keys to unlocking the value of synergy

Thesis (M.B.A.)--Massachusetts Institute of Technology, Sloan School of Management, 1999.Includes bibliographical references (leaves 122-126).The ability of mergers and acquisition transactions to generate enhanced shareholder value often hinges on successful integration. Our thesis examines this critical phase of merger activity. Through six discrete case studies and interviews with the individuals who led those transactions, we identify the important discriminators that differentiate success from failure. In addition, we highlight the firms and processes that are emerging as benchmarks in this area.by Albert K. Killen and Kevin P. Lawlor.M.B.A

Conserved but flexible modularity in the zebrafish skull: implications for craniofacial evolvability

Morphological variation is the outward manifestation of development and provides fodder for adaptive evolution. Because of this contingency, evolution is often thought to be biased by developmental processes and functional interactions among structures, which are statistically detectable through forms of covariance among traits. This can take the form of substructures of integrated traits, termed modules, which together comprise patterns of variational modularity. While modularity is essential to an understanding of evolutionary potential, biologists currently have little understanding of its genetic basis and its temporal dynamics over generations. To address these open questions, we compared patterns of craniofacial modularity among laboratory strains, defined mutant lines and a wild population of zebrafish ( ). Our findings suggest that relatively simple genetic changes can have profound effects on covariance, without greatly affecting craniofacial shape. Moreover, we show that instead of completely deconstructing the covariance structure among sets of traits, mutations cause shifts among seemingly latent patterns of modularity suggesting that the skull may be predisposed towards a limited number of phenotypes. This new insight may serve to greatly increase the evolvability of a population by providing a range of 'preset' patterns of modularity that can appear readily and allow for rapid evolution

Male sexually coercive behaviour drives increased swimming efficiency in female guppies

Sexual coercion of females by males is widespread across sexually reproducing species. It stems from a conflict of interest over reproduction and exerts selective pressure on both sexes. For females, there is often a significant energetic cost to exposure to male sexually coercive behaviours. Our understanding of the efficiency of female resistance to male sexually coercive behaviour is key to understanding how sexual conflict contributes to population level dynamics and ultimately to the evolution of sexually antagonistic traits. Overlooked within this context are plastic physiological responses of traits within the lifetime of females that could moderate the energetic cost imposed by coercive males. Here we examined whether conflict over the frequency and timing of mating between male and female guppies Poecilia reticulata can induce changes in swimming performance and aerobic capacity in females as they work to escape harassment by males. Females exposed to higher levels of harassment over a five month period used less oxygen to swim at a given speed, but displayed no difference in resting metabolic rate, maximal metabolic rate, maximal sustained swimming speed or aerobic scope compared to females receiving lower levels of harassment. The observed increase in swimming efficiency is at least partially related to differences in swimming mechanics, likely brought on by a training effect of increased activity, as highly harassed females spent less time performing pectoral fin-assisted swimming. Sexual conflict results in sexually antagonistic traits that impose a variety of costs, but our results show that females can reduce costs through phenotypic plasticity. It is also possible that phenotypic plasticity in swimming physiology or mechanics in response to sexual coercion can potentially give females more control over matings and affect which male traits are under selection.NERCLeverhulme Early Career FellowshipLeverhulme TrustER

Observation of Neutral Sodium Above Mercury During the Transit of November 8, 2006

We mapped the absorption of sunlight by sodium vapor in the exosphere of Mercury during the transit of Mercury on November 8, 2006, using the IBIS Interferometric BIdimensional Spectrometer at the Dunn Solar Telescope operated by the National Solar Observatory at Sunspot, New Mexico. The measurements were reduced to line-of-sight equivalent widths for absorption at the sodium D2 line around the shadow of Mercury. The sodium absorption fell off exponentially with altitude up to about 600 km. However there were regions around north and south polar-regions where relatively uniform sodium absorptions extended above 1000 km. We corrected the 0-600 km altitude profiles for seeing blur using the measured point spread function. Analysis of the corrected altitude distributions yielded surface densities, zenith column densities, temperatures and scale heights for sodium all around the planet. Sodium absorption on the dawn side equatorial terminator was less than on the dusk side, different from previous observations of the relative absorption levels. We also determined Earthward velocities for sodium atoms, and line widths for the absorptions. Earthward velocities resulting from radiation pressure on sodium averaged 0.8 km/s, smaller than a prediction of 1.5 km/s. Most line widths were in the range of 20 mA after correction for instrumental broadening, corresponding to temperatures in the range of 1000 K

Multi-level personalization of neuromusculoskeletal models to estimate physiologically plausible knee joint contact forces in children

Neuromusculoskeletal models are a powerful tool to investigate the internal biomechanics of an individual. However, commonly used neuromusculoskeletal models are generated via linear scaling of generic templates derived from elderly adult anatomies and poorly represent a child, let alone children with a neuromuscular disorder whose musculoskeletal structures and muscle activation patterns are profoundly altered. Model personalization can capture abnormalities and appropriately describe the underlying (altered) biomechanics of an individual. In this work, we explored the effect of six different levels of neuromusculoskeletal model personalization on estimates of muscle forces and knee joint contact forces to tease out the importance of model personalization for normal and abnormal musculoskeletal structures and muscle activation patterns. For six children, with and without cerebral palsy, generic scaled models were developed and progressively personalized by (1) tuning and calibrating musculotendon units' parameters, (2) implementing an electromyogram-assisted approach to synthesize muscle activations, and (3) replacing generic anatomies with image-based bony geometries, and physiologically and physically plausible muscle kinematics. Biomechanical simulations of gait were performed in the OpenSim and CEINMS software on ten overground walking trials per participant. A mixed-ANOVA test, with Bonferroni corrections, was conducted to compare all models' estimates. The model with the highest level of personalization produced the most physiologically plausible estimates. Model personalization is crucial to produce physiologically plausible estimates of internal biomechanical quantities. In particular, personalization of musculoskeletal anatomy and muscle activation patterns had the largest effect overall. Increased research efforts are needed to ease the creation of personalized neuromusculoskeletal models

Post-Formation Sodium Loss on the Moon: A Bulk Estimate

The Moon and Earth are generally similar in terms of composition, but there exist variations in the abundance of certain elements among the two bodies. These differences are a likely consequence of differing physical evolution of the two bodies over the solar system's history. While previous works have assumed this may be due to conditions during the Moon"TM"s formation, we explore the likelihood that the observed depletion in Sodium in lunar samples may be partially due to post-formation mechanisms. Solar effects, loss from a primordial atmosphere and impacts are some of the dominant post-formation mechanisms that we examine. We describe how our past and current modeling efforts indicate that a significant fraction of the observed depletion of sodium in lunar samples relative to a bulk silicate earth composition may have been due to solar activity, atmospheric loss and impacts. Using profiles of sodium abundances from lunar crustal samples may thus serve as a powerful tool towards exploring conditions on the Moon's surface throughout solar system history. Conditions on the Moon immediately after formation may still be recorded in the lunar crust and may provide a window towards interpreting observations from some of the first rocky exoplanets that will be most amenable to characterization. Potential spatial variation of sodium in the lunar crust may be a relevant consideration for future sample return efforts. Sodium Depletion in the Lunar Crust: Luna