Active Brownian Particles. From Individual to Collective Stochastic Dynamics

We review theoretical models of individual motility as well as collective dynamics and pattern formation of active particles. We focus on simple models of active dynamics with a particular emphasis on nonlinear and stochastic dynamics of such self-propelled entities in the framework of statistical mechanics. Examples of such active units in complex physico-chemical and biological systems are chemically powered nano-rods, localized patterns in reaction-diffusion system, motile cells or macroscopic animals. Based on the description of individual motion of point-like active particles by stochastic differential equations, we discuss different velocity-dependent friction functions, the impact of various types of fluctuations and calculate characteristic observables such as stationary velocity distributions or diffusion coefficients. Finally, we consider not only the free and confined individual active dynamics but also different types of interaction between active particles. The resulting collective dynamical behavior of large assemblies and aggregates of active units is discussed and an overview over some recent results on spatiotemporal pattern formation in such systems is given.Comment: 161 pages, Review, Eur Phys J Special-Topics, accepte

Reproductive biology of Cattleya eldorado, a species of Orchidaceae from the Amazonian white sand campinas

The orchid plants are highly prized for their lush exotic flowers. It is the largest plant family with more than 24000 species, which indicates a high diversity of forms and adaptations to different environments, including the capacity to attract, deceive and manipulate visitors involved in cross-pollination. Cattleya eldorado occurs in areas of white sand campinas, a typical vegetation type of the Amazon region, which is under strong anthropogenic pressure. This work's main objectives to know the biological processes of C. eldorado providing subsidies to maintain and manage it in its natural habitat. This study was conducted from 2000 to 2006 in the Campina Biological Reserve, during its flowering period. C. eldorado is an epiphytic orchid species that has the melittophyly syndrome and is adapted to its pollinator, the bee Eulaema mocsaryi recognizing their flowers by smell and by visual stimuli, through their color and reflection of ultraviolet light. C. eldorado is self-compatible, even if it requires a pollinating agent for the transfer of the pollinarium until its deposition in the stigmatic cavity of the flower.", 'enAs Orchidaceae são muito apreciadas por suas flores exóticas e exuberantes. É a maior família de plantas apresentando mais de 24000 espécies, o que denota uma alta diversidade de formas e adaptações a diferentes ambientes, como também para atração, engano e manipulação de visitantes na realização da polinização cruzada. Cattleya eldorado ocorre em áreas de campinas, que são formações vegetais típicas da região amazônica, que se encontram sob forte ação antrópica. Este trabalho tem como um de seus principais objetivos conhecer parte dos processos biológicos de C. eldorado fornecendo subsídios para conservá-la e manejá-la em seu habitat natural. Este estudo foi desenvolvido na Reserva Biológica de Campina, de 2000 a 2006, durante a sua floração. C. eldorado é uma espécie epifítica que apresenta a síndrome de melitofilia, estando adaptada ao seu polinizador, a abelha Eulaema mocsaryi, que reconhece suas flores pelo odor e pelo estímulo visual através de sua coloração e reflexão de luz ultravioleta. C. eldorado é uma espécie autocompatível, embora necessite de um agente polinizador para a transferência do polinário até sua deposição na cavidade estigmática da flor

Pollination of Pagamea duckei Standl. (Rubiaceae): a functionally dioecious species

The floral biology, pollination and breeding system of Pagamea duckei Standl. (Rubiaceae) were studied at the Reserva Biológica da Campina, Manaus, Amazonas, Brazil. Floral morphology suggested that P. duckei is a distylous species. However, crossing experiments revealed that it is functionally dioecious. The flowers are actinomorphic, yellowish, produce nectar and a sweet odor, which is more intense in the morning. Anthesis started in the morning between 5.00 and 6.00 AM and extended until dusk, when the corolla tube abscissed. The flowers were visited mostly by bees of the genus Melipona. Pagamea duckei is not agamospermic and thus needs pollen vectors for effective pollination. The results of this study strengthen the idea that, in Pagamea, species with distylous flower morphology are actually functionally dioecious

Representation in the (Artificial) Immune System

Much of contemporary research in Artificial Immune Systems (AIS) has partitioned into either algorithmic machine learning and optimisation, or, modelling biologically plausible dynamical systems, with little overlap between. We propose that this dichotomy is somewhat to blame for the lack of significant advancement of the field in either direction and demonstrate how a simplistic interpretation of Perelson’s shape-space formalism may have largely contributed to this dichotomy. In this paper, we motivate and derive an alternative representational abstraction. To do so we consider the validity of shape-space from both the biological and machine learning perspectives. We then take steps towards formally integrating these perspectives into a coherent computational model of notions such as life-long learning, degeneracy, constructive representations and contextual recognition—rhetoric that has long inspired work in AIS, while remaining largely devoid of operational definition