Micro-Structural Brain Alterations in Aviremic HIV+ Patients with Minor Neurocognitive Disorders: A Multi-Contrast Study at High Field.

OBJECTIVE: Mild neurocognitive disorders (MND) affect a subset of HIV+ patients under effective combination antiretroviral therapy (cART). In this study, we used an innovative multi-contrast magnetic resonance imaging (MRI) approach at high-field to assess the presence of micro-structural brain alterations in MND+ patients. METHODS: We enrolled 17 MND+ and 19 MND- patients with undetectable HIV-1 RNA and 19 healthy controls (HC). MRI acquisitions at 3T included: MP2RAGE for T1 relaxation times, Magnetization Transfer (MT), T2* and Susceptibility Weighted Imaging (SWI) to probe micro-structural integrity and iron deposition in the brain. Statistical analysis used permutation-based tests and correction for family-wise error rate. Multiple regression analysis was performed between MRI data and (i) neuropsychological results (ii) HIV infection characteristics. A linear discriminant analysis (LDA) based on MRI data was performed between MND+ and MND- patients and cross-validated with a leave-one-out test. RESULTS: Our data revealed loss of structural integrity and micro-oedema in MND+ compared to HC in the global white and cortical gray matter, as well as in the thalamus and basal ganglia. Multiple regression analysis showed a significant influence of sub-cortical nuclei alterations on the executive index of MND+ patients (p = 0.04 he and R(2) = 95.2). The LDA distinguished MND+ and MND- patients with a classification quality of 73% after cross-validation. CONCLUSION: Our study shows micro-structural brain tissue alterations in MND+ patients under effective therapy and suggests that multi-contrast MRI at high field is a powerful approach to discriminate between HIV+ patients on cART with and without mild neurocognitive deficits

GEMAS: Establishing geochemical background and threshold for 53 chemical elements in European agricultural soil

International audienc

The concept of compositional data analysis in practice - Total major element concentrations in agricultural and grazing land soils of Europe

Applied geochemistry and environmental sciences invariably deal with compositional data. Classically, the original or log-transformed absolute element concentrations are studied. However, compositional data do not vary independently, and a concentration based approach to data analysis can lead to faulty conclusions. For this reason a better statistical approach was introduced in the 1980s, exclusively based on relative information. Because the difference between the two methods should be most pronounced in large-scale, and therefore highly variable, datasets, here a new dataset of agricultural soils, covering all of Europe (5.6 million km2) at an average sampling density of 1 site/2500 km2, is used to demonstrate and compare both approaches. Absolute element concentrations are certainly of interest in a variety of applications and can be provided in tabulations or concentration maps. Maps for the opened data (ratios to other elements) provide more specific additional information. For compositional data XY plots for raw or log-transformed data should only be used with care in an exploratory data analysis (EDA) sense, to detect unusual data behaviour, candidate subgroups of samples, or to compare pre-defined groups of samples. Correlation analysis and the Euclidean distance are notmathematicallymeaningful concepts for this data type. Element relationships have to be investigated via a stability measure of the (log-)ratios of elements. Logratios are also the key ingredient for an appropriate multivariate analysis of compositional data