Dimensionality reduction for click-through rate prediction: Dense versus sparse representation

In online advertising, display ads are increasingly being placed based on real-time auctions where the advertiser who wins gets to serve the ad. This is called real-time bidding (RTB). In RTB, auctions have very tight time constraints on the order of 100ms. Therefore mechanisms for bidding intelligently such as clickthrough rate prediction need to be sufficiently fast. In this work, we propose to use dimensionality reduction of the user-website interaction graph in order to produce simplified features of users and websites that can be used as predictors of clickthrough rate. We demonstrate that the Infinite Relational Model (IRM) as a dimensionality reduction offers comparable predictive performance to conventional dimensionality reduction schemes, while achieving the most economical usage of features and fastest computations at run-time. For applications such as real-time bidding, where fast database I/O and few computations are key to success, we thus recommend using IRM based features as predictors to exploit the recommender effects from bipartite graphs.Comment: Presented at the Probabilistic Models for Big Data workshop at NIPS 201

Solvent-Responsive and Switchable Nanofiltration Membranes based on Hypercrosslinked Polymers with Permanent Porosity

Porous organic framework materials such as hypercrosslinked polymers (HCP) show a high chemical stability and dynamic behavior in a variety of solvents while their pore properties exhibit great potential for mixed matrix membrane (MMM) applications. However, their influence as porous filler in MMMs, especially for applications in liquid-phase filtration is still unexploited. Herein, we demonstrate an HCP-based MMM for molecular separation in the liquid phase by nanofiltration (NF). Depending on the solvent, the membrane changes its fractional free volume by shrinking or swelling. In connection to that, the pore size is also influenced, hence, providing a tunable permeance and molecular cut-off. The reduction of the pore volume and size directly correlates to the improvement of the NF performance, while the volume increase completely diminishes it. The extraordinary flexibility and high degree of crosslinking assure permanent porosity and render the dynamic behavior fully reversible. Thereby, a solvent-responsive “on” and “off” switching of the NF properties is enabled and was experimentally proven. Overall, this provides alternative strategies regarding the fouling and regeneration of membranes as well as the inhibition of pore blocking in membrane-derived processes by a tunable separation performance

The furan microsolvation blind challenge for quantum chemical methods: First steps

© 2018 Author(s). Herein we present the results of a blind challenge to quantum chemical methods in the calculation of dimerization preferences in the low temperature gas phase. The target of study was the first step of the microsolvation of furan, 2-methylfuran and 2,5-dimethylfuran with methanol. The dimers were investigated through IR spectroscopy of a supersonic jet expansion. From the measured bands, it was possible to identify a persistent hydrogen bonding OH-O motif in the predominant species. From the presence of another band, which can be attributed to an OH-π interaction, we were able to assert that the energy gap between the two types of dimers should be less than or close to 1 kJ/mol across the series. These values served as a first evaluation ruler for the 12 entries featured in the challenge. A tentative stricter evaluation of the challenge results is also carried out, combining theoretical and experimental results in order to define a smaller error bar. The process was carried out in a double-blind fashion, with both theory and experimental groups unaware of the results on the other side, with the exception of the 2,5-dimethylfuran system which was featured in an earlier publication

Molecular and morphological diversity in the /Rhombisporum clade of the genus Entoloma with a note on E. cocles

A combined morphological and molecular genetic study of the European species within the /Rhombisporum clade of the genus Entoloma reveals a high species diversity. This group comprises typical grassland species with pronounced and welldifferentiated cheilocystidia, and a wide range of spore shapes varying from rhomboid to five-angled. To fix the concept of the classical species E. rhombisporum, a neotype is designated. Nine species are described as new to science based on the result of nrDNA ITS phylogeny with additional gap coding, and morphological characterization: E. caulocystidiatum, E. lunare, E. pararhombisporum, E. pentagonale, E. perrhombisporum, E. rhombiibericum, E. rhombisporoides, E. sororpratulense, and E. subcuboideum. The ITS sequences of the holotypes of previously described species belonging to the /Rhombisporum clade, viz., E. laurisilvae and E. pratulense have also been generated and are published here for the first time. Since many of the above-mentioned species have been misidentified as E. cocles, it seemed opportune to also study this species and to designate a neotype to fix its current concept. A key including European species is presented. As most of the species are potentially important indicators for threatened grassland communities, the 130 ITS barcodes newly generated for this study may be useful as a reference in conservation and metabarcoding projects. Agaricales . Conservation . Endangered grassland communities . Entolomataceae semi-cryptic diversity . Taxonomy . TricholomatinaepublishedVersio

Evidence for the free radical/oxidative stress theory of ageing from the CHANCES consortium : a meta-analysis of individual participant data

BACKGROUND: The free radical/oxidative stress theory of ageing has received considerable attention, but the evidence on the association of oxidative stress markers with mortality is sparse. METHODS: We measured derivatives of reactive oxygen metabolite (D-ROM) levels as a proxy for the reactive oxygen species concentration and total thiol levels (TTL) as a proxy for the redox control status in 10,622 men and women (age range, 45–85 years), from population-based cohorts from Germany, Poland, Czech Republic, and Lithuania, of whom 1,702 died during follow-up. RESULTS: Both oxidative stress markers were significantly associated with all-cause mortality independently from established risk factors (including inflammation) and from each other in all cohorts. Regarding cause-specific mortality, compared to low D-ROM levels (≤340 Carr U), very high D-ROM levels (>500 Carr U) were strongly associated with both cardiovascular (relative risk (RR), 5.09; 95 % CI, 2.67–9.69) and cancer mortality (RR, 4.34; 95 % CI, 2.31–8.16). TTL was only associated with CVD mortality (RR, 1.30; 95 % CI, 1.15–1.48, for one-standard-deviation-decrease). The strength of the association of TTL with CVD mortality increased with age of the participants (RR for one-standard-deviation-decrease in those aged 70–85 years was 1.65; 95 % CI, 1.22–2.24). CONCLUSIONS: In these four population-based cohort studies from Central and Eastern Europe, the oxidative stress serum markers D-ROM and TTL were independently and strongly associated with all-cause and CVD mortality. In addition, D-ROM levels were also strongly associated with cancer mortality. This study provides epidemiological evidence supporting the free radical/oxidative stress theory of ageing and suggests that d-ROMs and TTL are useful oxidative stress markers associated with premature mortality. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12916-015-0537-7) contains supplementary material, which is available to authorized users

Analysis of 81 Genes From 64 Plastid Genomes Resolves Relationships in Angiosperms and Identifies Genome-Scale Evolutionary Patterns

Angiosperms are the largest and most successful clade of land plants with \u3e250,000 species distributed in nearly every terrestrial habitat. Many phylogenetic studies have been based on DNA sequences of one to several genes, but, despite decades of intensive efforts, relationships among early diverging lineages and several of the major clades remain either incompletely resolved or weakly supported. We performed phylogenetic analyses of 81 plastid genes in 64 sequenced genomes, including 13 new genomes, to estimate relationships among the major angiosperm clades, and the resulting trees are used to examine the evolution of gene and intron content. Phylogenetic trees from multiple methods, including model-based approaches, provide strong support for the position of Amborella as the earliest diverging lineage of flowering plants, followed by Nymphaeales and Austrobaileyales. The plastid genome trees also provide strong support for a sister relationship between eudicots and monocots, and this group is sister to a clade that includes Chloranthales and magnoliids. Resolution of relationships among the major clades of angiosperms provides the necessary framework for addressing numerous evolutionary questions regarding the rapid diversification of angiosperms. Gene and intron content are highly conserved among the early diverging angiosperms and basal eudicots, but 62 independent gene and intron losses are limited to the more derived monocot and eudicot clades. Moreover, a lineage-specific correlation was detected between rates of nucleotide substitutions, indels, and genomic rearrangements

Loss of heterozygosity at the ATBF1-A locus located in the 16q22 minimal region in breast cancer

Abstract Background Loss of heterozygosity (LOH) on the long arm of chromosome 16 is one of the most frequent genetic events in solid tumors. Recently, the AT-motif binding factor 1 (ATBF1)-A gene, which has been assigned to chromosome 16q22.3-23.1, was identified as a plausible candidate for tumor suppression in solid tumors due to its functional inhibition of cell proliferation and high mutation rate in prostate cancer. We previously reported that a reduction in ATBF1-A mRNA levels correlated with a worse prognosis in breast cancer. However, the mechanisms regulating the reduction of ATBF1-A mRNA levels (such as mutation, methylation in the promoter region, or deletion spanning the coding region) have not been fully examined. In addition, few studies have analyzed LOH status at the ATBF1-A locus, located in the 16q22 minimal region. Methods Profiles of ATBF1-A mRNA levels that we previously reported for 127 cases were used. In this study, breast cancer specimens as well as autologous blood samples were screened for LOH using 6 polymorphic microsatellite markers spanning chromosome band 16q22. For mutational analysis, we selected 12 cases and analyzed selected spots in the ATBF1-A coding region at which mutations have been frequently reported in prostate cancer. Results Forty-three cases that yielded clear profiles of LOH status at both D16S3106 and D16S3018 microsatellites, nearest to the location of the ATBF1-A gene, were regarded as informative and were classified into two groups: LOH (22 cases) and retention of heterozygosity (21 cases). Comparative assessment of the ATBF1-A mRNA levels according to LOH status at the ATBF1-A locus demonstrated no relationship between them. In the 12 cases screened for mutational analysis, there were no somatic mutations with amino acid substitution or frameshift; however, two germ line alterations with possible polymorphisms were observed. Conclusion These findings imply that ATBF1-A mRNA levels are regulated at the transcriptional stage, but not by genetic mechanisms, deletions (LOH), or mutations.</p