Design and analysis of laboratory experiments on aquatic plant litter decomposition

Microcosm studies are a useful tool when it comes to studying leaf litter decomposition but designing and analysing them can be a tricky path with many pitfalls. Because there is a plethora of drivers of leaf decomposition, it is important to be precise about the scientific questions that can be addressed with microcosm set-ups, and to use experimental designs that have minimal logistic implications but, at the same time, high statistical power. In this chapter, we first set the scene by introducing a hypothetical study that has the aim to estimate how leaf decomposition is driven by different decomposers and abiotic conditions. Following on from this scenario, we give an overview of the main biotic and abiotic drivers of leaf decomposition that will play a role in laboratory settings (with special attention to consumer species identity, species richness, body size and metabolic capacity, and also temperature, time scales and stressors). We then explain how to design and analyse laboratory experiments on aquatic leaf litter decomposition including the mathematics for calculating the metabolic power of leaf decomposers and some statistical models. Further three case studies are given—highly controlled experiments that can be analysed by analysis of variance.PostprintPeer reviewe

Antibiotic Pollution in Surface Fresh Waters: Occurrence and Effects

Worldwide, antibiotic usage exceeds 100,000 tons per year and there is increasing concern over the fate of these substances. Antibiotics are ubiquitous in the environment and significant concentrations have been detected in fresh waters. In this review, we highlight important aspects of antibiotic pollution in fresh waters: that concentrations of antibiotics in the environment are substantial, that micro-organisms are susceptible to this, that bacteria can evolve resistance in the environment, and that antibiotic pollution affects natural food webs while interacting with other stressors; which taken together poses a number of challenges for environmental scientists. In the literature, we found examples of considerable antibiotic pollution in fresh waters. In the Americas, antibiotic concentrations of up to 15 μg/L have been measured; with higher concentrations reported from European and African studies (over 10 μg/L and 50 μg/L respectively), and in Asian-pacific countries concentrations over 450 μg/L have been detected. While these concentrations might not be deemed harmful to humans, non-target freshwater organisms could be affected by them. Bioassays show that some of the antibiotics found in surface waters affect microbes at concentrations below 10 μg/L. Among the most potent antibiotics are those that prevail in streams and rivers in these concentrations, such as ciprofloxacin. Sub-lethal concentrations might not kill prokaryotes but contribute to increased bacterial resistance and change the composition of single-celled communities, as demonstrated in laboratory experiments. This has implications for the microbial food web (e.g. interactions among and between bacteria and their protozoan consumers) and by extension, larger organisms and ecosystem health. The fact that the effects of antibiotics are extremely context-dependent represents a challenge, particularly for in vitro research. We suggest future research avenues, taking into account food web experiments, antibiotics interacting with one another (and other stressors) and discuss how these can help to answer multi-layered research questions

Obligate groundwater crustaceans mediate biofilm interactions in a subsurface food web

Food webs in groundwater ecosystems are dominated by only a few top-level consumers, mainly crustaceans. These obligate groundwater dwellers—or stygobites—clearly interact with groundwater biofilm, but it is uncertain whether they affect the abundance and structure of biofilm assemblages. We hypothesized that crustacean stygobites would reduce bacteria and protozoan abundance and alter biofilm assemblage structure. We also hypothesized that high densities of stygobites would remove more bacteria and protozoa than would low densities, and that this difference would become more pronounced over time. First, we established that the amphipods Niphargus fontanus and Niphargus kochianus both ingest biofilm by examining their gut contents. We then conducted 2 microcosm experiments. The 1st experiment showed that both N. fontanus and the isopod Proasellus cavaticus increased protozoan abundance but that bacterial abundance was only slightly reduced in the presence of P. cavaticus. In the 2nd experiment, we determined how zero, low, and high densities of N. kochianus affected the biofilm. The high-density treatment of N. kochianus had significantly higher protozoan abundance than the control and the low-density treatment, and high densities of N. kochianus significantly increased the relative proportions of small- and medium-sized bacteria over time compared with controls. Our controlled microcosm experiments demonstrate that macroinvertebrate stygobites can influence groundwater biofilm assemblages, although the exact mechanisms are not clear. These results support the hypothesis that stygobites influence essential ecosystem services supplied by groundwater ecosystems

Habitat complexity in aquatic microcosms affects processes driven by detritivores

LF was supported in part by the Spanish Ministry of Economy and Competitiveness through the project SCARCE Consolider-Ingenio CSD2009-00065.Habitat complexity can influence predation rates (e.g. by providing refuge) but other ecosystem processes and species interactions might also be modulated by the properties of habitat structure. Here, we focussed on how complexity of artificial habitat (plastic plants), in microcosms, influenced short-term processes driven by three aquatic detritivores. The effects of habitat complexity on leaf decomposition, production of fine organic matter and pH levels were explored by measuring complexity in three ways: 1. as the presence vs. absence of habitat structure; 2. as the amount of structure (3 or 4.5 g of plastic plants); and 3. as the spatial configuration of structures (measured as fractal dimension). The experiment also addressed potential interactions among the consumers by running all possible species combinations. In the experimental microcosms, habitat complexity influenced how species performed, especially when comparing structure present vs. structure absent. Treatments with structure showed higher fine particulate matter production and lower pH compared to treatments without structures and this was probably due to higher digestion and respiration when structures were present. When we explored the effects of the different complexity levels, we found that the amount of structure added explained more than the fractal dimension of the structures. We give a detailed overview of the experimental design, statistical models and R codes, because our statistical analysis can be applied to other study systems (and disciplines such as restoration ecology). We further make suggestions of how to optimise statistical power when artificially assembling, and analysing, ‘habitat complexity’ by not confounding complexity with the amount of structure added. In summary, this study highlights the importance of habitat complexity for energy flow and the maintenance of ecosystem processes in aquatic ecosystems.Publisher PDFPeer reviewe

Benthic ecosystem functioning under climate change: modelling the bioturbation potential for benthic key species in the southern North Sea

publishedVersio

The effects of economic and sociocultural stressors on the well-being of children of Latino immigrants living in poverty.

This paper explored whether preschooler's physical (body mass index and salivary cortisol levels) and psychological (internalizing/externalizing behaviors) well-being were predicted by economic hardship as has been previously documented, and further whether parental immigration-related stress and/or acculturation level moderated this relationship in low-income Latino families

Environmental filtering and community delineation in the streambed ecotone

Abstract A current controversy in ecology is whether biological communities are discrete biological entities or simply study units created for convenience; a debate that becomes even more heated when delimiting communities along ecotones. Here, we report an interdisciplinary study designed to address the interplay between environmental drivers and community ecology in a typical ecotone ecosystem: the streambed. Environmental filtering at a micro-scale determined how diversity, productivity and composition of the whole streambed assemblage varied with depth and with the direction of vertical water exchange. Biomass and production decreased with increasing depth, and were lower under upwelling than downwelling conditions. However, the rate at which biomass and production decreased with increasing depth differed significantly for different taxonomic groups. Using quantitative biocenosis analysis, we also showed that benthic and hyporheic zone assemblages (assemblages in close juxtaposition) could be clearly distinguished as discrete communities with individual integrity. Vertical hydrodynamic conditions also influenced the demarcation between both communities; the benthic community reached greater depths in downwelling than in upwelling zones