Effect of seeding date, environment, and storage on canola seed vigour

Non-Peer ReviewedSeed vigour has been identified as one of the leading factors limiting stand establishment and yield in western Canada. Field studies at Scott, SK demonstrated that seed derived from Fall and April-sown canola produced higher plant densities, higher biomass at bolting, and higher seed yield than seed derived from May-sown canola. This study established the impact of seeding date on seed quality and vigour, which in turn affected emergence, seedling vigour and yield. Also, seed vigour slowly declines within one year, primarily from seed derived from the May-sown canola. Currently we are in the process of uncovering which genes and proteins are in common with vigour irrespective of seed source. We will combine our analysis with synchrotron technologies for a much more in-depth understanding of what constitutes “seed vigour” to develop a rapid, simple, and inexpensive method that will identify intrinsic characteristics of superior seed lots, as well as seed lots that lose vigour when stored under adverse conditions. In addition, we have initiated a study to compare hormones and metabolites during cold acclimation and freeze-induced injury/recovery to correlate these changes with winter survival. This research will identify traits that can be used in marker-assisted/molecular breeding programs for winter hardiness and possible genetic engineering studies on abiotic stress tolerance of seeds and plants. To further understand the processes involved in stress tolerance, we utilized gene transfer techniques to produce a PNT canola that over-expresses a novel gene which results in higher yields under stressful conditions. These PNT lines were tested in the field over 3 years across Western Canada in non-stressed, moderately stressed, or severely stressed areas. At each location, several lines flowered and matured 1 to 3 weeks earlier. The faster maturating PNT lines (up to 55% more mature at harvest) had increased yields (up to 32% increase) and enhanced seed quality (up to 87% increase in larger and more mature seed) versus the control. These results, both in controlled laboratory tests and in field trials, have been optimistic for genetic engineering of plants for enhanced stress tolerance without losing agronomical important characteristics

Winding effects on brane/anti-brane pairs

We study a brane/anti-brane configuration which is separated along a compact direction by constructing a tachyon effective action which takes into account transverse scalars. Such an action is relevant in the study of HQCD model of Sakai and Sugimoto of chiral symmetry breaking, where the size of the compact circle sets the confinement scale. Our approach is motivated by string theory orbifold constructions and gives a route to model inhomogeneous tachyon decay. We illustrate the techniques involved with a relatively simple example of a harmonic oscillator on a circle. We will then repeat the analysis for the Sakai-Sugimoto model and show that by integrating out the winding modes will provide us with a renormalized action with a lower energy than that of truncating to zero winding sector.Comment: 21 pages, 3 figures. v3: discussion and references added, published versio

Quantization and Compressive Sensing

Quantization is an essential step in digitizing signals, and, therefore, an indispensable component of any modern acquisition system. This book chapter explores the interaction of quantization and compressive sensing and examines practical quantization strategies for compressive acquisition systems. Specifically, we first provide a brief overview of quantization and examine fundamental performance bounds applicable to any quantization approach. Next, we consider several forms of scalar quantizers, namely uniform, non-uniform, and 1-bit. We provide performance bounds and fundamental analysis, as well as practical quantizer designs and reconstruction algorithms that account for quantization. Furthermore, we provide an overview of Sigma-Delta ($\Sigma\Delta$) quantization in the compressed sensing context, and also discuss implementation issues, recovery algorithms and performance bounds. As we demonstrate, proper accounting for quantization and careful quantizer design has significant impact in the performance of a compressive acquisition system.Comment: 35 pages, 20 figures, to appear in Springer book "Compressed Sensing and Its Applications", 201

A Review of Multi- Compartment Infectious Disease Models

Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/156488/2/insr12402.pdfhttp://deepblue.lib.umich.edu/bitstream/2027.42/156488/1/insr12402_am.pd

Nuclear SUN1 stabilizes endothelial cell junctions via microtubules to regulate blood vessel formation

Endothelial cells line all blood vessels, where they coordinate blood vessel formation and the blood-tissue barrier via regulation of cell-cell junctions. The nucleus also regulates endothelial cell behaviors, but it is unclear how the nucleus contributes to endothelial cell activities at the cell periphery. Here, we show that the nuclear-localized linker of the nucleoskeleton and cyto-skeleton (LINC) complex protein SUN1 regulates vascular sprouting and endothelial cell-cell junction morphology and function. Loss of murine endothelial Sun1 impaired blood vessel formation and destabilized junctions, angiogenic sprouts formed but retracted in SUN1-depleted sprouts, and zebrafish vessels lacking Sun1b had aberrant junctions and defective cell-cell connections. At the cellular level, SUN1 stabilized endothelial cell-cell junctions, promoted junction function, and regulated contractility. Mechanistically, SUN1 depletion altered cell behaviors via the cytoskeleton without changing transcriptional profiles. Reduced peripheral microtubule density, fewer junction contacts, and increased catastrophes accompanied SUN1 loss, and microtubule depolymerization phenocopied effects on junctions. Depletion of GEF-H1, a microtubule-regulated Rho activator, or the LINC complex protein nesprin-1 rescued defective junctions of SUN1-depleted endothelial cells. Thus, endothelial SUN1 regulates peripheral cell-cell junctions from the nucleus via LINC complex-based microtubule interactions that affect peripheral microtubule dynamics and Rho-regulated contractility, and this long-range regulation is important for proper blood vessel sprouting and junction integrity

The Fluorescence Detector of the Pierre Auger Observatory

The Pierre Auger Observatory is a hybrid detector for ultra-high energy cosmic rays. It combines a surface array to measure secondary particles at ground level together with a fluorescence detector to measure the development of air showers in the atmosphere above the array. The fluorescence detector comprises 24 large telescopes specialized for measuring the nitrogen fluorescence caused by charged particles of cosmic ray air showers. In this paper we describe the components of the fluorescence detector including its optical system, the design of the camera, the electronics, and the systems for relative and absolute calibration. We also discuss the operation and the monitoring of the detector. Finally, we evaluate the detector performance and precision of shower reconstructions.Comment: 53 pages. Submitted to Nuclear Instruments and Methods in Physics Research Section

Warped Wilson Line DBI Inflation

We propose a novel inflationary scenario in string theory in which the inflaton field is a 'Wilson line' degree of freedom in the worldvolume of a probe Dp-brane, in a warped flux compactification. Kinetic terms for Wilson line fields on the world volume of a D-brane take a nonstandard Dirac-Born-Infeld (DBI) form. Thus, we work in the framework of DBI inflation. This extends the original slow roll Wilson line inflationary scenario, where only the quadratic piece was considered. Warped DBI Wilson line inflation offers an attractive alternative to ordinary (position field) DBI inflation, inasmuch as observational and theoretical constraints get considerably relaxed. Besides the standard large non-Gaussianities in DBI scenarios, it is also possible to achieve an observable amount of gravitational waves.Comment: v3: Typos corrected, Published in JCAP; 21 page