Agroecology: promoting the transition towards sustainability

En este artículo se define agroecología como la aplicación de los conceptos y prinicipios ecológicos al diseño y manejo de los sistemas alimentarios sostenibles. Se presentan los argumentos principales que sostienen la validez, importancia y pertinencia del enfoque agroecológico, no solo para entender los procesos involucrados en la producción de alimentos, sino para proponer alternativas que conduzcan a esos procesos para operar en sistemas sostenibles. El concepto clave, que guía el razonamiento metodológico y epistemológico en este análisis, es el de sostenibilidad. Para alcanzar sostenibilidad la metodología agroecológica no solo se ancla en la Ecología, lo cual se describe en el trabajo, sino que percibe la producción de alimentos como un proceso que involucra a los productores y consumidores interactuando en forma dinámica.In this article agroecology is defined as the application of ecological concepts and principles to the design and management of sustainable food systems. The principal arguments are presented that support the validity, importance, and application of the agroecologial focus, not only in order to understand the processes involved in food production, but also to propose alternatives that help these processes to operate in sustainable systems. The key concept that guides the methodological and epitistemalogical rationale of this analysis is sustainability. In order to achieve sustainability the agroecological methodology not only links to Ecology, as is described in the text, but perceives food production as a process involving producers and consumers operating in a dynamic interaction

Big Data in Agriculture – From FOODIE towards data bio

What’s the role of Big Data in the farming ecosystem? Farmers need to measure and understand the impact of a huge amount and variety of data which drive overall quality and yield of their fields. Among those are local weather data, GPS data, ortophotos, satellite imagery, soil specifics, soil conductivity, seed, fertilizer and crop protectant specifications and many more. Being able to leverage this data for running long and short term simulations in response to “events” like changed weather, market need or other parameters is indispensable for farmers in terms of maximizing their profits. IoT (Internet of Technology) including field sensors and machinery monitoring. The experimentation in FarmTelemetry project demonstrates that one average Czech farm (i.e. around 1’000 hectares) could generate daily 20 MegaBytes of data. This could be only for Czech Republic something between 30 and 50 GB per one day. We may easily reach Terabytes of data a day from agricultural basic monitoring by sensors in Europe. Together with satellite data agriculture will need to manage extremely large amount of data. On one side there is growing whole ecosystem with a strong need to secure Big Data from different repositories and heterogeneous sources. In some cases, sharing of data could be common interest, but on other side, there are also different interests and data could help to one part of value chain to take bigger part of profit. From this reason Big data are sensitive topics and trusting of producers about data security is essential. The producers of seeds and chemicals want to maximize their business with farmers. Our team stated implementation of Big Data technologies in frame of European 7FP project FOODIE. This work currently the work continue as part of DataBio project

The subduction structure of the Northern Apennines: results from the RETREAT seismic deployment

The project Retreating-trench, extension, and accretion tectonics, RETREAT, is a multidisciplinary study of the Northern Apennines (earth.geology.yale.edu/RETREAT/), funded by the United States National Science Foundation (NSF) in collaboration with the Italian Istituto Nazionale di Geofisica e Vulcanologia (INGV) and the Grant Agency of the Czech Academy of Sciences (GAAV). The main goal of RETREAT is to develop a self-consistent dynamic model of syn-convergent extension, using the Northern Apennines as a natural laboratory. In the context of this project a passive seismological experiment was deployed in the fall of 2003 for a period of three years. RETREAT seismologists aim to develop a comprehensive understanding of the deep structure beneath the Northern Apennines, with particular attention on inferring likely patterns of mantle flow. Specific objectives of the project are the crustal and lithospheric thicknesses, the location and geometry of the Adriatic slab, and the distribution of seismic anisotropy laterally and vertically in the lithosphere and asthenosphere. The project is collecting teleseismic and regional earthquake data for 3 years. This contribution describes the RETREAT seismic deployment and reports on key results from the first year of the deployment. We confirm some prior findings regarding the seismic structure of Central Italy, but our observations also highlight the complexity of the Northern Apennines subduction system

Evidence synthesis as the basis for decision analysis: a method of selecting the best agricultural practices for multiple ecosystem services

Agricultural management practices have impacts not only on crops and livestock, but also on soil, water, wildlife, and ecosystem services. Agricultural research provides evidence about these impacts, but it is unclear how this evidence should be used to make decisions. Two methods are widely used in decision making: evidence synthesis and decision analysis. However, a system of evidence-based decision making that integrates these two methods has not yet been established. Moreover, the standard methods of evidence synthesis have a narrow focus (e.g., the effects of one management practice), but the standard methods of decision analysis have a wide focus (e.g., the comparative effectiveness of multiple management practices). Thus, there is a mismatch between the outputs from evidence synthesis and the inputs that are needed for decision analysis. We show how evidence for a wide range of agricultural practices can be reviewed and summarized simultaneously (“subject-wide evidence synthesis”), and how this evidence can be assessed by experts and used for decision making (“multiple-criteria decision analysis”). We show how these methods could be used by The Nature Conservancy (TNC) in California to select the best management practices for multiple ecosystem services in Mediterranean-type farmland and rangeland, based on a subject-wide evidence synthesis that was published by Conservation Evidence (www.conservationevidence.com). This method of “evidence-based decision analysis” could be used at different scales, from the local scale (farmers deciding which practices to adopt) to the national or international scale (policy makers deciding which practices to support through agricultural subsidies or other payments for ecosystem services). We discuss the strengths and weaknesses of this method, and we suggest some general principles for improving evidence synthesis as the basis for multi-criteria decision analysis

Heat shock factor-1 modulates p53 activity in the transcriptional response to DNA damage

Here we define an important role for heat shock factor 1 (HSF1) in the cellular response to genotoxic agents. We demonstrate for the first time that HSF1 can complex with nuclear p53 and that both proteins are co-operatively recruited to p53-responsive genes such as p21. Analysis of natural and synthetic cis elements demonstrates that HSF1 can enhance p53-mediated transcription, whilst depletion of HSF1 reduces the expression of p53-responsive transcripts. We find that HSF1 is required for optimal p21 expression and p53-mediated cell-cycle arrest in response to genotoxins while loss of HSF1 attenuates apoptosis in response to these agents. To explain these novel properties of HSF1 we show that HSF1 can complex with DNA damage kinases ATR and Chk1 to effect p53 phosphorylation in response to DNA damage. Our data reveal HSF1 as a key transcriptional regulator in response to genotoxic compounds widely used in the clinical setting, and suggest that HSF1 will contribute to the efficacy of these agents

Continuous-wave radar to detect defects within heat exchangers and steam generator tubes.

A major cause of failures in heat exchangers and steam generators in nuclear power plants is degradation of the tubes within them. The tube failure is often caused by the development of cracks that begin on the outer surface of the tube and propagate both inwards and laterally. A new technique was researched for detection of defects using a continuous-wave radar method within metal tubing. The experimental program resulted in a completed product development schedule and the design of an experimental apparatus for studying handling of the probe and data acquisition. These tests were completed as far as the prototypical probe performance allowed. The prototype probe design did not have sufficient sensitivity to detect a defect signal using the defined radar technique and did not allow successful completion of all of the project milestones. The best results from the prototype probe could not detect a tube defect using the radar principle. Though a more precision probe may be possible, the cost of design and construction was beyond the scope of the project. This report describes the probe development and the status of the design at the termination of the project

Molecular diagnosis of bird-mediated pest consumption in tropical farmland

Biodiversity loss will likely have surprising and dramatic consequences for human wellbeing. Identifying species that benefit society represents a critical first step towards predicting the consequences of biodiversity loss. Though natural predators prevent billions of dollars in agricultural pest damage annually, characterizing which predators consume pests has proven challenging. Emerging molecular techniques may illuminate these interactions. In the countryside of Costa Rica, we identified avian predators of coffee’s most damaging insect pest, the coffee berry borer beetle (Coleoptera:Scolytidae Hypothenemus hampeii), by assaying 1430 fecal samples of 108 bird species for borer DNA. While feeding trials confirmed the efficacy of our approach, detection rates were low. Nevertheless, we identified six species that consume the borer. These species had narrow diet breadths, thin bills, and short wings; traits shared with borer predators in other systems. Borer predators were not threatened; therefore, safeguarding pest control necessitates managing species beyond those at risk of regional extinction by maintaining populations in farmland habitats. Generally, our results demonstrate potential for pairing molecular methods with ecological analyses to yield novel insights into species interactions. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/2193-1801-3-630) contains supplementary material, which is available to authorized users

The Rise of Three Rs Centres and Platforms in Europe*

Public awareness and discussion about animal experiments and replacement methods has greatly increased in recent years. The term 'the Three Rs', which stands for the Replacement, Reduction and Refinement of animal experiments, is inseparably linked in this context. A common goal within the Three Rs scientific community is to develop predictive non-animal models and to better integrate all available data from in vitro, in silico and omics technologies into regulatory decision-making processes regarding, for example, the toxicity of chemicals, drugs or food ingredients. In addition, it is a general concern to implement (human) non-animal methods in basic research. Toward these efforts, there has been an ever-increasing number of Three Rs centres and platforms established over recent years - not only to develop novel methods, but also to disseminate knowledge and help to implement the Three Rs principles in policies and education. The adoption of Directive 2010/63/EU on the protection of animals used for scientific purposes gave a strong impetus to the creation of Three Rs initiatives, in the form of centres and platforms. As the first of a series of papers, this article gives an overview of the European Three Rs centres and platforms, and their historical development. The subsequent articles, to be published over the course of ATLA's 50th Anniversary year, will summarise the current focus and tasks as well as the future and the plans of the Three Rs centres and platforms. The Three Rs centres and platforms are very important points of contact and play an immense role in their respective countries as 'on the ground' facilitators of Directive 2010/63/EU. They are also invaluable for the widespread dissemination of information and for promoting implementation of the Three Rs in general