The effect of twisted magnetic field on the resonant absorption of MHD waves in coronal loops

The standing quasi modes in a cylindrical incompressible flux tube with magnetic twist that undergoes a radial density structuring is considered in ideal magnetohydrodynamics (MHD). The radial structuring is assumed to be a linearly varying density profile. Using the relevant connection formulae, the dispersion relation for the MHD waves is derived and solved numerically to obtain both the frequencies and damping rates of the fundamental and first-overtone modes of both the kink (m=1) and fluting (m=2,3) waves. It was found that a magnetic twist will increase the frequencies, damping rates and the ratio of the oscillation frequency to the damping rate of these modes. The period ratio P_1/P_2 of the fundamental and its first-overtone surface waves for kink (m=1) and fluting (m=2,3) modes is lower than 2 (the value for an untwisted loop) in the presence of twisted magnetic field. For the kink modes, particularly, the magnetic twists B_{\phi}/B_z=0.0065 and 0.0255 can achieve deviations from 2 of the same order of magnitude as in the observations. Furthermore, for the fundamental kink body waves, the frequency bandwidth increases with increasing the magnetic twist.Comment: 18 pages, 9 figure

Photon and dilepton emission rates from high density quark matter

We compute the rates of real and virtual photon (dilepton) emission from dense QCD matter in the color-flavor locked (CFL) phase, focusing on results at moderate densities (3-5 times the nuclear saturation density) and temperatures $T\simeq80$ MeV. We pursue two approaches to evaluate the electromagnetic (e.m.) response of the CFL ground state: (i) a direct evaluation of the photon self energy using quark particle/-hole degrees of freedom, and (ii) a Hidden Local Symmetry (HLS) framework based on generalized mesonic excitations where the $\rho$ meson is introduced as a gauge boson of a local SU(3) color-flavor group. The $\rho$ coupling to generalized two-pion states induces a finite width and allows to address the issue of vector meson dominance (VMD) in the CFL phase. We compare the calculated emissivities (dilepton rates) to those arising from standard hadronic approaches including in-medium effects. For rather large superconducting gaps (several tens of MeV at moderate densities), as suggested by both perturbative and nonperturbative estimates, the dilepton rates from CFL quark matter turn out to be very similar to those obtained in hadronic many-body calculations, especially for invariant masses above $M\simeq0.3$ GeV. A similar observation holds for (real) photon production.Comment: 18 pages, 12 figure

Fornix deep brain stimulation enhances acetylcholine levels in the hippocampus

Deep brain stimulation (DBS) of the fornix has gained interest as a potential therapy for advanced treatment-resistant dementia, yet the mechanism of action remains widely unknown. Previously, we have reported beneficial memory effects of fornix DBS in a scopolamine-induced rat model of dementia, which is dependent on various brain structures including hippocampus. To elucidate mechanisms of action of fornix DBS with regard to memory restoration, we performed c-Fos immunohistochemistry in the hippocampus. We found that fornix DBS induced a selective activation of cells in the CA1 and CA3 subfields of the dorsal hippocampus. In addition, hippocampal neurotransmitter levels were measured using microdialysis before, during and after 60 min of fornix DBS in a next experiment. We observed a substantial increase in the levels of extracellular hippocampal acetylcholine, which peaked 20 min after stimulus onset. Interestingly, hippocampal glutamate levels did not change compared to baseline. Therefore, our findings provide first experimental evidence that fornix DBS activates the hippocampus and induces the release of acetylcholine in this region

Transverse oscillations of coronal loops

On 14 July 1998 TRACE observed transverse oscillations of a coronal loop generated by an external disturbance most probably caused by a solar flare. These oscillations were interpreted as standing fast kink waves in a magnetic flux tube. Firstly, in this review we embark on the discussion of the theory of waves and oscillations in a homogeneous straight magnetic cylinder with the particular emphasis on fast kink waves. Next, we consider the effects of stratification, loop expansion, loop curvature, non-circular cross-section, loop shape and magnetic twist. An important property of observed transverse coronal loop oscillations is their fast damping. We briefly review the different mechanisms suggested for explaining the rapid damping phenomenon. After that we concentrate on damping due to resonant absorption. We describe the latest analytical results obtained with the use of thin transition layer approximation, and then compare these results with numerical findings obtained for arbitrary density variation inside the flux tube. Very often collective oscillations of an array of coronal magnetic loops are observed. It is natural to start studying this phenomenon from the system of two coronal loops. We describe very recent analytical and numerical results of studying collective oscillations of two parallel homogeneous coronal loops. The implication of the theoretical results for coronal seismology is briefly discussed. We describe the estimates of magnetic field magnitude obtained from the observed fundamental frequency of oscillations, and the estimates of the coronal scale height obtained using the simultaneous observations of the fundamental frequency and the frequency of the first overtone of kink oscillations. In the last part of the review we summarise the most outstanding and acute problems in the theory of the coronal loop transverse oscillations

Ciclagem de nutrientes em florestas implantadas de Eucalyptus e Pinus I. distribuição no solo e na manta

Em dois povoamentos Pinus taeda e Eucalyptus citriodora de 20 e 24 anos de idade respectivamente situados em um solo podzólico vermelho amarelo variação Laras no Município de Piracicaba, SP (22°43' lat. S, 47° 38' long. W a 580 m de altitude, preciptação média anual de 1.170 mm), foram coletadas amostras de solo, folhas e manta orgânica. Para um melhor conhecimento da mobilidade dos nutrientes as amostras foram divididas em: folhas novas, maduras e velhas, manta superior e inferior, solo superficial (0 - 10 cm) e sub superficial (10 - 20 cm). Determinaram os teores dos elementos, contidos na matéria seca e no solo.From a grove of E. citriodora (20 years) and P. taeda (24 years) site on a red-yellow podzolic (ultisol), at Piracicaba (22° 43' S, 47° 38' W, elev. 1933 ft., av. annual precipt 1,170 mm), SP, Brazil, leaves, litter fall an soil samples (0 - 10 and 10 - 20 cm depth) were collected. Chemical analysis were run for macro and micronutrients, except for Cl and Mo, by conventional modes. The authors concluded: 1. The E. citriodora was better supplied in nutrients than P. taeda, except for iron; 2. Both forest species hence the organic carbon content in the soil; 3. E. citriodora improved the potassium and magnesium contents in the soil. 4. P. taeda improved the available aluminium of the soil; 5. Both forest species henced the potassium content the litter fall; 6. The fall was improved in iron by P. taeda

An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics

For a decade, The Cancer Genome Atlas (TCGA) program collected clinicopathologic annotation data along with multi-platform molecular profiles of more than 11,000 human tumors across 33 different cancer types. TCGA clinical data contain key features representing the democratized nature of the data collection process. To ensure proper use of this large clinical dataset associated with genomic features, we developed a standardized dataset named the TCGA Pan-Cancer Clinical Data Resource (TCGA-CDR), which includes four major clinical outcome endpoints. In addition to detailing major challenges and statistical limitations encountered during the effort of integrating the acquired clinical data, we present a summary that includes endpoint usage recommendations for each cancer type. These TCGA-CDR findings appear to be consistent with cancer genomics studies independent of the TCGA effort and provide opportunities for investigating cancer biology using clinical correlates at an unprecedented scale. Analysis of clinicopathologic annotations for over 11,000 cancer patients in the TCGA program leads to the generation of TCGA Clinical Data Resource, which provides recommendations of clinical outcome endpoint usage for 33 cancer types

Discharge Estimation From Dense Arrays of Pressure Transducers

In situ river discharge estimation is a critical component of studying rivers. A dominant method for establishing discharge monitoring in situ is a temporary gauge, which uses a rating curve to relate stage to discharge. However, this approach is constrained by cost and the time to develop the stage-discharge rating curve, as rating curves rely on numerous flow measurements at high and low stages. Here, we offer a novel alternative approach to traditional temporary gauges: estimating Discharge via Arrays of Pressure Transducers (DAPT). DAPT uses a Bayesian discharge algorithm developed for the upcoming Surface Water Ocean Topography satellite (SWOT) to estimate in situ discharge from automated water surface elevation measurements. We conducted sensitivity tests over 4,954 model runs on five gauged rivers and conclude that the DAPT method can robustly reproduce discharge with an average Nash-Sutcliffe Efficiency (NSE) of 0.79 and Kling-Gupta Efficiency of 0.78. Further, we find that the DAPT method estimates discharge similarly to an idealized temporary gauge created from the same input data (NSE differences of less than 0.1), and that results improve significantly with accurate priors. Finally, we test the DAPT method in nine poorly gauged rivers in a realistic and complex field setting in the Peace-Athabasca Delta, and show that the DAPT method largely outperforms a temporary gauge in this time and budget constrained setting. We therefore recommend DAPT as an effective tool for in situ discharge estimation in cases where there is not enough time or resources to develop a temporary gauge

Advancing Field-Based GNSS Surveying for Validation of Remotely Sensed Water Surface Elevation Products

To advance monitoring of surface water resources, new remote sensing technologies including the forthcoming Surface Water and Ocean Topography (SWOT) satellite (expected launch 2022) and its experimental airborne prototype AirSWOT are being developed to repeatedly map water surface elevation (WSE) and slope (WSS) of the world’s rivers, lakes, and reservoirs. However, the vertical accuracies of these novel technologies are largely unverified; thus, standard and repeatable field procedures to validate remotely sensed WSE and WSS are needed. To that end, we designed, engineered, and operationalized a Water Surface Profiler (WaSP) system that efficiently and accurately surveys WSE and WSS in a variety of surface water environments using Global Navigation Satellite Systems (GNSS) time-averaged measurements with Precise Point Positioning corrections. Here, we present WaSP construction, deployment, and a data processing workflow. We demonstrate WaSP data collections from repeat field deployments in the North Saskatchewan River and three prairie pothole lakes near Saskatoon, Saskatchewan, Canada. We find that WaSP reproducibly measures WSE and WSS with vertical accuracies similar to standard field survey methods [WSE root mean squared difference (RMSD) ∼8 cm, WSS RMSD ∼1.3 cm/km] and that repeat WaSP deployments accurately quantify water level changes (RMSD ∼3 cm). Collectively, these results suggest that WaSP is an easily deployed, self-contained system with sufficient accuracy for validating the decimeter-level expected accuracies of SWOT and AirSWOT. We conclude by discussing the utility of WaSP for validating airborne and spaceborne WSE mappings, present 63 WaSP in situ lake WSE measurements collected in support of NASA’s Arctic-Boreal and Vulnerability Experiment, highlight routine deployment in support of the Lake Observation by Citizen Scientists and Satellites project, and explore WaSP utility for validating a novel GNSS interferometric reflectometry LArge Wave Warning System