Long-term retrospective assessment of a transmission hotspot for human alveolar echinococcosis in mid-west China

Background Human alveolar echinococcosis caused by infection with Echinococcus multilocularis is one of the most potentially pathogenic helminthic zoonoses. Transmission occurs involving wildlife cycles typically between fox and small mammal intermediate hosts. In the late 1980s/early 1990s a large focus of human AE was identified in poor upland agricultural communities in south Gansu Province, China. More detailed investigations in 1994–97 expanded community screening and identified key risk factors of dog ownership and landscape type around villages that could support susceptible rodent populations. A crash of the dog population (susceptible domestic definitive host) in the early 1990s appeared to stop transmission. Methodology/Findings We subsequently undertook follow-up eco-epidemiological studies based on human population screening and dog survey, in 2005/6 and in 2014/15. Our observations show a decrease in human AE prevalence, especially marked in the 11–30 year old age category. In 2015, although the dog population had recovered and in addition, forest protection and the reforestation of some areas may have favoured red fox (wild definitive host) population growth, there was no evidence of infection in owned dogs. Conclusions/Significance Those observations suggest that over decades socio-ecological changes resulted in a cascade of factors that exacerbated and then interrupted parasite emergence, with probable elimination of peri-domestic transmission of E. multilocularis in this area, despite the relative proximity of large active transmission foci on the eastern Tibetan Plateau. This study case exemplifies how anthropogenic land use and behavioural changes can modify emergence events and the transmission of endemic zoonotic parasite infections, and subsequently the importance of considering processes over the long-term in a systems approach in order to understand pathogen and disease distribution

Reinfection studies of canine echinococcosis and role of dogs in transmission of Echinococcus multilocularis in Tibetan communities, Sichuan, China

In the eastern Tibetan plateau both human cystic and alveolar echinococcosis (AE) caused by infection with Echincoccus granulosus or Echinococcus multilocularis, respectively are highly endemic. The domestic dog plays a key role in zoonotic transmission in this region. Our primary objective was to investigate the role of domestic dogs in maintaining transmission of E. multilocularis in Shiqu county, Sichuan. A cohort of 281 dogs was followed up over one year after a single treatment with praziquantel followed by re-infection surveillance at 2, 5 and 12 months post-treatment. Faecal samples were tested by an Echinococcus genus-specific coproantigen ELISA and two species-specific copro-PCR tests. Total Echinococcus coproantigen prevalence in Shiqu at baseline was 21% and 9·6% after 2 months. E. multilocularis copro-PCR was positive in 11·2% of dogs before treatment (vs 3·6% with E. granulosus copro-DNA), 2·9% at 2 months post-treatment, and 0% at 5 month and 12 months. The results suggest that dogs may have the potential to maintain E. multilocularis transmission within local pastoral communities, and thus dog dosing could be an effective strategy to reduce transmission of E. multilocularis as well as E. granulosus in these co-endemic Tibetan communitie

An index method of estimating relative population densities of the Common Vole (Microtus arvalis) at landscape scale

Many issues in fundamental and applied ecology require the use of sampling protocols at the sectoral or even regional scales at which many important ecological mechanisms occur. The lack of workable sampling methods at these scales is a major obstacle to the analysis and understanding of these mechanisms. We test the validity of an index method of estimating relative population densities, applicable along transects of several kilometers in length, for a population of Common Voles (Microtus arvalis). The results show that the index method of estimating relative density is weil adapted for monitoring variations in the abundance and spatial distribution of Common Vole populations and authorizes studies for a wide range of objectives and spatial scalesDe nombreuses questions d'écologie fondamentale ou appliquée imposent l'application de protocoles d'échantillonnage à des échelles sectorielles, voire régionales, auxquelles se réalisent de nombreux mécanismes écologiques mportants. L'absence de méthodes d'échantillonnage utilisables à ces échelles représente un obstacle majeur à l'analyse et à la compréhension de ces mécanismes, Pour une population de Campagnols des champs (Microlus aryalis) nous avons testé la validite d'une méthode d'estimation indiciaire en densité relative applicable le long de transect, plurikilométriques. Les résultats obtenus montrent que cette méthode d'estimation indiciaire en densité relative est bien adaptée au suivi des variations d'abondance et de distribution des populations du Campagnol des champs et autorise des études pour une grande diversité d'objectifs et d'échelles spatiales

Range-wide variation in local adaptation and phenotypic plasticity of fitness-related traits in Fagus sylvatica and their implications under climate change

Aim To better understand and more realistically predict future species distribution ranges, it is critical to account for local adaptation and phenotypic plasticity in populations' responses to climate. This is challenging because local adaptation and phenotypic plasticity are trait-dependent and traits covary along climatic gradients, with differential consequences for fitness. Our aim is to quantify local adaptation and phenotypic plasticity of vertical and radial growth, leaf flushing and survival across the range of Fagus sylvatica and to estimate the contribution of each trait to explaining the species' occurrence. Location Europe. Time period 1995-2014; 2070. Major taxa studied Fagus sylvatica L. Methods We used vertical and radial growth, flushing phenology and mortality of F. sylvatica L. recorded in the BeechCOSTe52 database (>150,000 trees). Firstly, we performed linear mixed-effect models that related trait variation and covariation to local adaptation (related to the planted populations' climatic origin) and phenotypic plasticity (accounting for the climate of the plantation), and we made spatial predictions under current and representative concentration pathway (RCP 8.5) climates. Secondly, we combined spatial trait predictions in a linear model to explain the occurrence of the species. Results The contribution of plasticity to intraspecific trait variation is always higher than that of local adaptation, suggesting that the species is less sensitive to climate change than expected; different traits constrain beech's distribution in different parts of its range: the northernmost edge is mainly delimited by flushing phenology (mostly driven by photoperiod and temperature), the southern edge by mortality (mainly driven by intolerance to drought), and the eastern edge is characterized by decreasing radial growth (mainly shaped by precipitation-related variables in our model); considering trait covariation improved single-trait predictions. Main conclusions Population responses to climate across large geographical gradients are dependent on trait x environment interactions, indicating that each trait responds differently depending on the local environment.Peer reviewe

Répartition de la chevêche d'athéna (athene noctua scop.) et variation d'échelle d'analyse des paysages

Une typologie paysagère établie à partir de pixels élémentaires de 250 m de côté dans trois zones en France (Vosges du Nord, Scarpe-Escaut et Causse Méjean) a permis de déterminer 5 à 8 types primaires, permettant d'expliquer la répartition des Chevêches d'Athéna (Athene noctua). Les milieux favorables sont anthropisés, avec des modes d'occupation du sol conduits sur de petites surfaces. Une typologie secondaire réalisée pour différentes échelles d'analyse par agglomération de pixels élémentaires révèle une certaine diversité incluant des éléments paysagers favorables. Ainsi les fenêtres obtenues par agglomération de pixels élémentaires adjacents les plus favorables ne sont pas uniquement formées de pixels favorables aux chouettes. Cette typologie secondaire a permis de déterminer une échelle d'analyse de l'habitat expliquant la répartition de l'espèce et qui varie de 56 à 156 ha selon les zones d'étude.Distribution of the Little Owl (Athene noctua) is accounted for by reference to primary landscape types identified from a grid of 250 m x 250 m cells in three areas of France (Northem Vosges, Scarpe-Escaut Plain, and Causse Méjean) . Preferred environments are those affected by human activity where small areas are given over to different land uses. Secondary landscape types constructed for different scales by aggregating cells of primary landscape types of analysis reveal a very heterogeneous landscape mosaic. Windows formed by aggregating the most suitable adjacent cells are not exclusively composed of cells preferred by owls. These secondary landscape types provide a habitat scale of analysis explaining species distribution and ranging from 56 to 156 hectares depending on the study regions

Landscape Composition and Spatial Prediction of Alveolar Echinococcosis in Southern Ningxia, China

In humans, larvae of the fox tapeworm Echinococcus multilocularis typically infect the liver where metastasis, calcification and necrosis cause the zoonotic disease alveolar echinococcosis (AE). Treatment is difficult. Early detection greatly increases patient life expectancy but under-detection is a problem. Understanding the ecological conditions that elevate AE risk would help identify at-risk communities. Voles and lemmings of the subfamily Arvicolinae are important intermediate hosts in most AE endemic areas, and arvicoline habitat has been proposed as a predictor of AE risk. Using a model of spatial autocorrelation with land cover identified from satellite remote sensing imagery, we identified AE hotspots in southern Ningxia Hui Autonomous Region (NHAR), China. Hotspots were not located near optimal arvicoline habitats. Thus, non-arvicolines provide principal reservoirs in NHAR and the range of ecological conditions sustaining E. multilocularis transmission in China is greater than previously thought. We also show: social factors explain higher prevalence in females than males; dogs increase infection risk; and we argue that water source quality is important via interaction with other environmental variables. Our map of AE prevalence represents the current state-of-the-art regarding the spatial distribution of AE in southern NHAR and provides an important baseline for future monitoring programs there

Seasonal pattern of Echinococcus re-infection in owned dogs in Tibetan communities of Sichuan, China and its implications for control

Background Human cystic echinococcosis (CE) and alveolar echinococcosis (AE) are highly endemic in Tibetan communities of Sichuan Province. Previous research in the region indicated that domestic dog was the major source of human infection, and observations indicated that domestic dog could have more access to intermediate hosts of Echinococcus spp.: both domestic livestock (CE) viscera and small mammals (AE), in early winter and again in spring. We hypothesized that there would therefore be a significant increase in the risk of canine infection with Echinococcus spp. in these two seasons and conducted a reinfection study to investigate this further. Methods Faecal samples were collected from owned dogs in seven townships in Ganze Tibetan Autonomous Prefecture (Sichuan Province, China), and Echinococcus spp. infection status was determined using copro-antigen ELISA. Dogs were sampled in April (spring), July (early summer), September/October (autumn/early winter) and December (winter) in 2009; and in April (spring) 2010. Dogs were treated with praziquantel following each of the five sample collections to eliminate any tapeworms. Information on dog sex, age and body weight was also collected. The t-test, Fisher’s exact test, Poisson regression and logistic regression were used to compare means and prevalences, and to identify factors associated with infection status. Results The proportion of female dogs was significantly lower than that of male dogs; female dogs had significantly higher (22.78 %) baseline copro-ELISA prevalence than males (11.88 %). Dog body weight, sex, age, county and previous infection status at any sampling point had no influence on the re-infection prevalence in general. Poisson regression did not found a significant influence on the re-infection prevalence due to different deworming/sampling time spans. Dogs exhibited significantly higher re-infection prevalences in spring and early summer of 2009 and in early winter between September/October and December of 2009, suggesting a higher infection pressure in these seasons comparing with other seasons. Conclusion Following praziquantel treatment, dog body weight, sex, age, county, deworming time span and previous infection status at any sampling point had no influence on the re-infection prevalence in the region in general. The differences between re-infection prevalences were probably due to the seasonality in Echinoccocus spp. infection pressure in the region. Early winter, spring and early summer should be important seasons for optimal dog deworming intervention in these Tibetan communities

High dissimilarity within a multiyear annual record of pollen assemblages from a North American tallgrass prairie

Citation: Commerford, J. L., McLauchlan, K. K., & Minckley, T. A. (2016). High dissimilarity within a multiyear annual record of pollen assemblages from a North American tallgrass prairie. Ecology and Evolution, 6(15), 5273-5289. doi:10.1002/ece3.2259Grassland vegetation varies in composition across North America and has been historically influenced by multiple biotic and abiotic drivers, including fire, herbivory, and topography. Yet, the amount of temporal and spatial variability exhibited among grassland pollen assemblages, and the influence of these biotic and abiotic drivers on pollen assemblage composition and diversity has been relatively understudied. Here, we examine 4 years of modern pollen assemblages collected from a series of 28 traps at the Konza Prairie Long-Term Ecological Research Area in the Flint Hills of Kansas, with the aim of evaluating the influence of these drivers, as well as quantifying the amount of spatial and temporal variability in the pollen signatures of the tallgrass prairie biome. We include all terrestrial pollen taxa in our analyses while calculating four summative metrics of pollen diversity and composition -beta-diversity, Shannon index, nonarboreal pollen percentage, and Ambrosia: Artemisia -and find different roles of fire, herbivory, and topography variables in relation to these pollen metrics. In addition, we find significant annual differences in the means of three of these metrics, particularly the year 2013 which experienced high precipitation relative to the other 3 years of data. To quantify spatial and temporal dissimilarity among the samples over the 4-year study, we calculate pairwise squared-chord distances (SCD). The SCD values indicate higher compositional dissimilarity across the traps (0.38 mean) among all years than within a single trap from year to year (0.31 mean), suggesting that grassland vegetation can have different pollen signatures across finely sampled space and time, and emphasizing the need for additional long-term annual monitoring of grassland pollen

Echinococcus multilocularis and Echinococcus shiquicus in a small mammal community on the eastern Tibetan Plateau : host species composition, molecular prevalence, and epidemiological implications

Background The eastern part of the Tibetan Plateau is now recognized as an endemic region with the highest reported human infection rates in the world of human alveolar echinococcosis (AE) caused by Echinococcus multilocularis. Existing epidemiological studies on AE have mainly focused on the synanthropic environment, while basic parasitological and ecological aspects in wildlife host species remain largely unknown, especially for small mammal hosts. Therefore, we examined small mammal host species composition, occurrence, and the prevalence of both E. multilocularis and E. shiquicus in Shiqu County (Sichuan Province, China), eastern Tibetan Plateau. Results In total, 346 small mammals from five rodent and one pika species were trapped from four randomly set 0.25 ha square plots. Two vole species, Lasiopodomys fuscus (n = 144) and Microtus limnophilus (n = 44), and the plateau pika (Ochotona curzoniae) (n = 135), were the three most-dominant species trapped. Although protoscoleces of E. multilocularis and E. shiquicus were only observed in L. fuscus and O. curzoniae, respectively, cox1 and nad1 gene DNA of E. shiquicus was detected in all the small mammal species except for Neodon irene, whereas E. multilocularis was detected in the three most-dominant species. The overall molecular prevalence of Echinococcus species was 5.8 (95% CI: 3.3–8.2%) ~ 10.7% (95% CI: 7.4–14.0%) (the conservative prevalence to the maximum prevalence with 95% CI in parentheses), whereas for E. multilocularis it was 4.3 (95% CI: 2.2–6.5%) ~ 6.7% (95% CI: 4.0–9.3%), and 1.5 (95% CI: 0.2–2.7%) ~ 4.1% (95% CI: 2.0–6.1%) for E. shiquicus. The prevalence of both E. multilocularis and E. shiquicus, was significantly higher in rodents (mainly voles) than in pikas. Phylogenetic analyses revealed that Echinococcus haplotypes of cox1 from small mammal hosts were actively involved in the sylvatic and anthropogenic transmission cycles of E. multilocularis in the eastern Tibetan Plateau. Conclusions In contrast to previous studies, the current results indicated that rodent species, rather than pikas, are probably more important natural intermediate hosts of E. multilocularis and E. shiquicus in the eastern Tibetan Plateau. Thus, understanding interspecific dynamics between rodents and pikas is essential to studies of the echinococcosis transmission mechanism and human echinococcosis prevention in local communities. Keywords: Echinococcus multilocularis, E. shiquicus, Small mammal Prevalence, Tibetan Platea

Mapping and modelling the geographical distribution and environmental limits of podoconiosis in Ethiopia

BACKGROUND Ethiopia is assumed to have the highest burden of podoconiosis globally, but the geographical distribution and environmental limits and correlates are yet to be fully investigated. In this paper we use data from a nationwide survey to address these issues. METHODOLOGY Our analyses are based on data arising from the integrated mapping of podoconiosis and lymphatic filariasis (LF) conducted in 2013, supplemented by data from an earlier mapping of LF in western Ethiopia in 2008-2010. The integrated mapping used woreda (district) health offices' reports of podoconiosis and LF to guide selection of survey sites. A suite of environmental and climatic data and boosted regression tree (BRT) modelling was used to investigate environmental limits and predict the probability of podoconiosis occurrence. PRINCIPAL FINDINGS Data were available for 141,238 individuals from 1,442 communities in 775 districts from all nine regional states and two city administrations of Ethiopia. In 41.9% of surveyed districts no cases of podoconiosis were identified, with all districts in Affar, Dire Dawa, Somali and Gambella regional states lacking the disease. The disease was most common, with lymphoedema positivity rate exceeding 5%, in the central highlands of Ethiopia, in Amhara, Oromia and Southern Nations, Nationalities and Peoples regional states. BRT modelling indicated that the probability of podoconiosis occurrence increased with increasing altitude, precipitation and silt fraction of soil and decreased with population density and clay content. Based on the BRT model, we estimate that in 2010, 34.9 (95% confidence interval [CI]: 20.2-51.7) million people (i.e. 43.8%; 95% CI: 25.3-64.8% of Ethiopia's national population) lived in areas environmentally suitable for the occurrence of podoconiosis. CONCLUSIONS Podoconiosis is more widespread in Ethiopia than previously estimated, but occurs in distinct geographical regions that are tied to identifiable environmental factors. The resultant maps can be used to guide programme planning and implementation and estimate disease burden in Ethiopia. This work provides a framework with which the geographical limits of podoconiosis could be delineated at a continental scale