Latest LAPS developments Assimilating remote sensing data and its impact on LAPS predictability

Presentación realizada en la 3rd European Nowcasting Conference, celebrada en la sede central de AEMET en Madrid del 24 al 26 de abril de 2019

Analysis of root growth from a phenotyping data set using a density-based model

Major research efforts are targeting the improved performance of root systems for more efficient use of water and nutrients by crops. However, characterizing root system architecture (RSA) is challenging, because roots are difficult objects to observe and analyse. A model-based analysis of RSA traits from phenotyping image data is presented. The model can successfully back-calculate growth parameters without the need to measure individual roots. The mathematical model uses partial differential equations to describe root system development. Methods based on kernel estimators were used to quantify root density distributions from experimental image data, and different optimization approaches to parameterize the model were tested. The model was tested on root images of a set of 89 Brassica rapa L. individuals of the same genotype grown for 14 d after sowing on blue filter paper. Optimized root growth parameters enabled the final (modelled) length of the main root axes to be matched within 1% of their mean values observed in experiments. Parameterized values for elongation rates were within ±4% of the values measured directly on images. Future work should investigate the time dependency of growth parameters using time-lapse image data. The approach is a potentially powerful quantitative technique for identifying crop genotypes with more efficient root systems, using (even incomplete) data from high-throughput phenotyping systems

Coupling X-band dual-polarized mini-radars and hydro-meteorological forecast models: the HYDRORAD project

Abstract. Hydro-meteorological hazards like convective outbreaks leading to torrential rain and floods are among the most critical environmental issues world-wide. In that context weather radar observations have proven to be very useful in providing information on the spatial distribution of rainfall that can support early warning of floods. However, quantitative precipitation estimation by radar is subjected to many limitations and uncertainties. The use of dual-polarization at high frequency (i.e. X-band) has proven particularly useful for mitigating some of the limitation of operational systems, by exploiting the benefit of easiness to transport and deploy and the high spatial and temporal resolution achievable at small antenna sizes. New developments on X-band dual-polarization technology in recent years have received the interest of scientific and operational communities in these systems. New enterprises are focusing on the advancement of cost-efficient mini-radar network technology, based on high-frequency (mainly X-band) and low-power weather radar systems for weather monitoring and hydro-meteorological forecasting. Within the above context, the main objective of the HYDRORAD project was the development of an innovative \\mbox{integrated} decision support tool for weather monitoring and hydro-meteorological applications. The integrated system tool is based on a polarimetric X-band mini-radar network which is the core of the decision support tool, a novel radar products generator and a hydro-meteorological forecast modelling system that ingests mini-radar rainfall products to forecast precipitation and floods. The radar products generator includes algorithms for attenuation correction, hydrometeor classification, a vertical profile reflectivity correction, a new polarimetric rainfall estimators developed for mini-radar observations, and short-term nowcasting of convective cells. The hydro-meteorological modelling system includes the Mesoscale Model 5 (MM5) and the Army Corps of Engineers Hydrologic Engineering Center hydrologic and hydraulic modelling chain. The characteristics of this tool make it ideal to support flood monitoring and forecasting within urban environment and small-scale basins. Preliminary results, carried out during a field campaign in Moldova, showed that the mini-radar based hydro-meteorological forecasting system can constitute a suitable solution for local flood warning and civil flood protection applications

Accelerating root system phenotyping of seedlings through a computer-assisted processing pipeline

Background: There are numerous systems and techniques to measure the growth of plant roots. However, phenotyping large numbers of plant roots for breeding and genetic analyses remains challenging. One major difficulty is to achieve high throughput and resolution at a reasonable cost per plant sample. Here we describe a cost-effective root phenotyping pipeline, on which we perform time and accuracy benchmarking to identify bottlenecks in such pipelines and strategies for their acceleration. Results: Our root phenotyping pipeline was assembled with custom software and low cost material and equipment. Results show that sample preparation and handling of samples during screening are the most time consuming task in root phenotyping. Algorithms can be used to speed up the extraction of root traits from image data, but when applied to large numbers of images, there is a trade-off between time of processing the data and errors contained in the database. Conclusions: Scaling-up root phenotyping to large numbers of genotypes will require not only automation of sample preparation and sample handling, but also efficient algorithms for error detection for more reliable replacement of manual interventions

Mechanistic framework to link root growth models with weather and soil physical properties, including example applications to soybean growth in Brazil

Background and aimsRoot elongation is generally limited by a combination of mechanical impedance and water stress in most arable soils. However, dynamic changes of soil penetration resistance with soil water content are rarely included in models for predicting root growth. Better modelling frameworks are needed to understand root growth interactions between plant genotype, soil management, and climate. Aim of paper is to describe a new model of root elongation in relation to soil physical characteristics like penetration resistance, matric potential, and hypoxia.MethodsA new diagrammatic framework is proposed to illustrate the interaction between root elongation, soil management, and climatic conditions. The new model was written in Matlab®, using the root architecture model RootBox and a model that solves the 1D Richards equations for water flux in soil. Inputs: root architectural parameters for Soybean; soil hydraulic properties; root water uptake function in relation to matric flux potential; root elongation rate as a function of soil physical characteristics. Simulation scenarios: (a) compact soil layer at 16 to 20 cm; (b) test against a field experiment in Brazil during contrasting drought and normal rainfall seasons.Results(a) Soil compaction substantially slowed root growth into and below the compact layer. (b) Simulated root length density was very similar to field measurements, which was influenced greatly by drought. The main factor slowing root elongation in the simulations was evaluated using a stress reduction function.ConclusionThe proposed framework offers a way to explore the interaction between soil physical properties, weather and root growth. It may be applied to most root elongation models, and offers the potential to evaluate likely factors limiting root growth in different soils and tillage regimes

Atmospheric Optical Turbulence and Inertial Subrange Spectra Over the Ocean

OSA Optical Sensors and Sensing Congress 2020 (AIS, LACSEA, SENSORS, ES, pcAOP)The article of record as published may be found at https://doi.org/10.1364/PCAOP.2020.PM1D.4A comprehensive dataset was collected in a recent field campaign to characterize the marine atmospheric boundary layer (MABL). Results of turbulence spectra are presented here to show the complications in estimating C2n in the MABL