High performance computing for a 3-D optical diffraction tomographic application in fluid velocimetry

Optical Diffraction Tomography has been recently introduced in fluid velocimetry to provide three dimensional information of seeding particle locations. In general, image reconstruction methods at visible wavelengths have to account for diffraction. Linear approximation has been used for three-dimensional image reconstruction, but a non-linear and iterative reconstruction method is required when multiple scattering is not negligible. Non-linear methods require the solution of the Helmholtz equation, computationally highly demanding due to the size of the problem. The present work shows the results of a non-linear method customized for spherical particle location using GPU computing and a made-to-measure storing format

Capillary microfluidic platform for sulfite determination in wines

A microfluidic paper-based analytical device integrating a chromoreactand – a formylazo dye– has been fabri- cated and used for a colorimetric assay of sulfites. The chromoreactand was covalently linked to paper by vinyl sulfone chemistry. This work presents two robust capillary microfluidic devices to determine sulfite in wine without any pretreatment. One of them based on thread (µTPAD) useful to determine it in white wine and another based on paper (µPAD) to specifically determine sulfite in red wine as well as in white wine. Both are based on the selective recognition of sulfite by means of a chromoreactand that turns from orange to yellow in the presence of sulfite. The colour information acquired (H coordinate) using a digital camera readout allows for a range of appli- cation of the µTPAD from 7.8⋅10−5 M (8.1 mg L−1) to 2.7⋅10−3 M (279.3 mg L−1) with a limit of detection (LOD) of 78 µM. The strong interference caused by the dyes present in red wine is eliminated by including a laminated paper channel in the µPAD structure that allows for the separation of colorants from red wine before the recognition of the sulfite. This makes it possible to adjust the µPAD procedure to the usual sulfite concentration in wine, with an LOD of 2.2⋅10−4 M (22.7 mg L−1) and a CV of 2.6%.This work was founded by Spanish “Ministerio de Economía y Competitividad” (Projects PID2019-103938RB-I00) and Junta de Andalucía (Projects B-FQM-243-UGR18 and P18-RT-2961). The projects were partially supported by European Regional Development Funds (ERDF)

The effect of an online exercise programme on bone health in paediatric cancer survivors (iBoneFIT): study protocol of a multi-centre randomized controlled trial

Background: New approaches on paediatric cancer treatment aim to maintain long-term health. As a result of radiotherapy, chemotherapy or surgery, paediatric cancer survivors tend to suffer from any chronic health condition. Endocrine dysfunction represents one of the most common issues and affects bone health. Exercise is key for bone mass accrual during growth, specifically plyometric jump training. The iBoneFIT study will investigate the effect of a 9-month online exercise programme on bone health in paediatric cancer survivors. This study will also examine the effect of the intervention on body composition, physical fitness, physical activity, calcium intake, vitamin D, blood samples quality of life and mental health. Methods: A minimum of 116 participants aged 6 to 18 years will be randomized into an intervention (n = 58) or control group (n = 58). The intervention group will receive an online exercise programme and diet counselling on calcium and vitamin D. In addition, five behaviour change techniques and a gamification design will be implemented in order to increase the interest of this non-game programme. The control group will only receive diet counselling. Participants will be assessed on 3 occasions: 1) at baseline; 2) after the 9 months of the intervention; 3) 4 months following the intervention. The primary outcome will be determined by dual energy X-ray absorptiometry (DXA) and the hip structural analysis, trabecular bone score and 3D-DXA softwares. Secondary outcomes will include anthropometry, body composition, physical fitness, physical activity, calcium and vitamin D intake, blood samples, quality of life and mental health. Discussion: Whether a simple, feasible and short in duration exercise programme can improve bone health has not been examined in paediatric cancer survivors. This article describes the design, rationale and methods of a study intended to test the effect of a rigorous online exercise programme on bone health in paediatric cancer survivors. If successful, the iBoneFIT study will contribute to decrease chronic health conditions in this population and will have a positive impact in the society.The iBoneFIT project is funded by a fellowship from 'la Caixa' Foundation (ID 100010434). The fellowship code is LCF/BQ/PR19/11700007. This study has been partially supported by the University of Granada, Plan Propio de Investigación 2016, Excellence actions: Units of Excellence; Unit of Excellence on Exercise and Health (UCEES), and by the Junta de Andalucía, Consejería de Conocimiento, Investigación y Universidades and European Regional Development Fund (ERDF), ref. SOMM17/6107/UGR

From bioavailability science to regulation of organic chemicals

The bioavailability of organic chemicals in soil and sediment is an important area of scientific investigation for environmental scientists, although this area of study remains only partially recognized by regulators and industries working in the environmental sector. Regulators have recently started to consider bioavailability within retrospective risk assessment frameworks for organic chemicals; by doing so, realistic decision-making with regard to polluted environments can be achieved, rather than relying on the traditional approach of using total-extractable concentrations. However, implementation remains difficult because scientific developments on bioavailability are not always translated into ready-to-use approaches for regulators. Similarly, bioavailability remains largely unexplored within prospective regulatory frameworks that address the approval and regulation of organic chemicals. This article discusses bioavailability concepts and methods, as well as possible pathways for the implementation of bioavailability into risk assessment and regulation; in addition, this article offers a simple, pragmatic and justifiable approach for use within retrospective and prospective risk assessment

Morphometry ofDiaphorina citri(Hemiptera: Liviidae) on Six Rutaceae from Veracruz, Mexico

RESUMEN El objetivo de este estudio fue realizar la caracterización morfométrica de Diaphorina citri Kuwayama (Hemiptera: Liviidae), así como conocer si el hospedero ejerce alguna influencia importante en la definición de variantes específicas. Los caracteres medidos fueron la longitud del cuerpo, longitud y amplitud de alas anteriores y procesos genales, y longitud de antenas. Los machos y hembras se analizaron de manera independiente. Las medidas obtenidas se sometieron a un análisis de varianza y a un análisis de componentes principales. La mayor variación morfométrica y menor talla se encontró en especímenes machos colectados en hospederos no preferenciales como Citrus limetta Risso, C. sinensis (L.) ‘Selección 8’ y C. paradisi Macfad.; mientras que los más grandes y menos variables en C. sinensis (L.) Osbeck cv. ‘Marrs ‘, C. sinensis (L.) cv. ‘Valencia’ y Murraya paniculata (L.) Jack. Los caracteres con variación notable fueron la longitud y amplitud de las alas anteriores y de los procesos genales. Se encontró mayor variación morfométrica en machos que en hembras. Los resultados mostraron que D. citri es una especie con variantes morfométricas y probablemente el hospedante posee un efecto determinante en la definición de caracteres. ABSTRACT The objective of this study was to characterize Diaphorina citri Kuwayama (Hemiptera: Liviidae) morphometrically, as well to determine whether the host has a relationship to a specific morphometric variation. The traits measured were body length, antenna length, lengths and widths of genal processes, and forewing length and width. Females and males were analyzed separately. The measures obtained were subjected to an analysis of variance and principal components analysis. The greatest morphometrical variation and smallest sizes were found in males collected from non-prefered hosts such as Citrus limetta Risso, C. sinensis (L.) ‘Selection 8’ and C. paradisi Macfad.; while, the least variations and largest sizes were found on C. sinensis (L.) Osbeck cv. ‘Marrs’, C. sinensis (L.) cv. ‘Valencia’ and Murraya paniculata (L.) Jack. The traits with notable variation were lengths and widths of forewings and genal processes. Greater morphometrical variations were found in males than in females. The results indicate that D. citri is a species with morphometrical variants and probably the host is a determinant in the definition of characters

Hongos liquenizados y liquenícolas de la Sierra de Albarracín (Teruel, España)

Se presenta un catálogo de 462 hongos liquenizados y liquenícolas de la Sierra de Albarracín (Teruel, Aragón, España), como resultado de la IV Campaña de Recolección organizada por la Sociedad Española de Liquenología (SEL). Diplotomma hedinii es novedad para la Península Ibé- rica y Lepraria leuckertiana constituye una segunda cita peninsular, 69 taxones son novedad para Aragón y 86 lo son para la provincia de Teruel

The reproductive capacity of Monk Parakeets Myiopsitta monachus is higher in their invasive range

Breeding parameters for Monk Parakeets Myiopsitta monachus nesting in Barcelona, Spain, were collected for 651 nests over five breeding seasons. This invasive population has a high reproductive capacity compared with the species in the native range: fledging success was double, the percentage of pairs attempting second broods three times higher and 55% of first-year birds bred compared with almost zero in South America

Lichenized and lichenicolous fungi from the Sierra de Albarracín (Teruel, Spain)

Se presenta un catálogo de 462 hongos liquenizados y liquenícolas de la Sierra de Albarracín (Teruel, Aragón, España), como resultado de la IV Campaña de Recolección organizada por la Sociedad Española de Liquenología (SEL). Diplotomma hedinii es novedad para la Península Ibérica y Lepraria leuckertiana constituye una segunda cita peninsular, 69 taxones son novedad para Aragón y 86 lo son para la provincia de Teruel.A catalogue of 462 lichenized and lichenicolous fungi from Sierra de Albarracín, (Teruel, Spain), is presented as the result of the SEL (Sociedad Española de Liquenología) IV collecting field trip. Diplotomma hedinii is recorded for the first time for the Iberian Peninsula and Lepraria leuckertiana is registered for the second time. The checklist also includes 69 taxa new for Aragón Community and 86 new for the province of Teruel

Long non-coding RNA signatures in the Ileum and Colon of Crohn’s disease patients and effect of Anti-TNF-α treatment on their modulation

Biological therapies only benefit one-third of patients with Crohn’s disease (CD). For this reason, a deeper understanding of the mechanisms by which biologics elicit their effect on intestinal mucosa is needed. Increasing evidence points toward the involvement of long noncoding RNAs (lncRNAs) in the pathogenesis of CD, although their role remains poorly studied. We aimed to characterize lncRNA profiles in the ileum and colon from CD patients and evaluate the effect of anti-TNF-α treatment on their transcription. Terminal ileum and left colon samples from 30 patients (active CD = 10, quiescent CD = 10, and healthy controls (HCs) = 10) were collected for RNA-seq. The patients were classified according to endoscopic activity. Furthermore, biopsies were cultured with infliximab, and their transcriptome was determined by Illumina gene expression array. A total of 678 differentially expressed lncRNAs between the terminal ileum and left colon were identified in HCs, 438 in patients with quiescent CD, and 468 in patients with active CD. Additionally, we identified three new lncRNAs in the ileum associated with CD activity. No differences were observed when comparing the effect of infliximab according to intestinal location, presence of disease (CD vs. HC), and activity (active vs. quiescent). The expression profiles of lncRNAs are associated with the location of intestinal tissue, being very different in the ileum and colon. The presence of CD and disease activity are associated with the differential expression of lncRNAs. No modulatory effect of infliximab has been observed in the lncRNA transcriptom