Selective large-eddy simulation of hypersonic flows. Procedure to activate the filtering in unresolved regions only (arXiv:1211.1305, submitted to Computer Physics Communications)

A new method for the localization of the regions where the turbulent fluctuations are unresolved is applied to the large-eddy simulation (LES) of a compressible turbulent jet with an initial Mach number equal to 5. The localization method used is called selective LES and is based on the exploitation of a scalar probe function f which represents the magnitude of the stretching-tilting term of the vorticity equation normalized with the enstrophy (Tordella et al. 2007). For a fully developed turbulent field of fluctuations, statistical analysis shows that the probability that f is larger than 2 is almost zero, and, for any given threshold, it is larger if the flow is under-resolved. By computing the spatial field of f in each instantaneous realization of the simulation it is possible to locate the regions where the magnitude of the normalized vortical stretching-tilting is anomalously high. The sub-grid model is then introduced into the governing equations in such regions only. The results of the selective LES simulation are compared with those of a standard LES, where the sub-grid terms are used in the whole domain. The comparison is carried out by assuming as reference field a higher resolution Euler simulation of the same jet. It is shown that the selective LES modifies the dynamic properties of the flow to a lesser extent with respect to the classical LES. In particular, the prediction of the enstrophy distribution and of the energy and density spectra are substantially improve

Waste heat to power conversion by means of thermomagnetic hydrodynamic energy harvester

Energy harvesting from extremely low enthalpy sources can play an important role in increasing the sustainability of future energy applications: low temperature differences are common and offer an abundant source, available both in the natural environment and as the result of a many industrial process. This paper presents the first closed-loop thermomagnetic hydrodynamic energy harvester, based on thermomagnetic advection and exploiting a commercial ferrofluid. The lab-scale prototype has a toroidal geometry adopted from the well-known tokamak inertial machines. Peltier modules are used to control the thermal gradient that is harvested and converted directly to electric energy, while permanent magnets trigger the advection. Temperature sensors are installed along the toroidal walls (thermistors) and are placed in contact with the rotating fluid (thermocouples). To extract and ensure the electrical energy output, the structure is wrapped-up with induction coils. Two coil configurations (purely poloidal and mixed poloidal/toroidal windings) are tested, in a heterogeneous two-phase flow from the combination of water carrier and ferrofluid packets, reaching a maximum extracted electrical power per unit of temperature difference of 10.4 μW/K. This positions the device close to 20% of the ideal Carnot efficiency of a thermal machine working on the same temperature drop. Numerical analysis of the system has been performed developing a Fortran™ code in a Eulerian framework, using a mixed Fourier-Galerkin/finite difference spatial discretization. The harvester is suitable for producing electricity from running engines, appliances, warm gas exhausts, exothermic processes

Large-eddy simulation of hypersonic flows. Selective procedure to activate the sub-grid model wherever small scale turbulence is present

A new method for the localization of the regions where small scale turbulent fluctuations are present in hypersonic flows is applied to the large-eddy simulation (LES) of a compressible turbulent jet with an initial Mach number equal to 5. The localization method used is called selective LES and is based on the exploitation of a scalar probe function! which represents the magnitude of the stretching tilting term of the vorticity equation normalized with the enstrophy (Tordella et al., 2007) [3]. For a fully developed turbulent field of fluctuations, statistical analysis shows that the probability that f is larger than 2 is almost zero, and, for any given threshold, it is larger if the flow is under-resolved. By computing the spatial field off in each instantaneous realization of the simulation it is possible to locate the regions where the magnitude of the normalized vortical stretching tilting is anomalously high. The sub-grid model is then introduced into the governing equations in such regions only. The results of the selective LES simulation are compared with those of a standard LES, where the sub-grid terms are used in the whole domain, and with those of a standard Euler simulation with the same resolution. The comparison is carried out by assuming as reference field a higher resolution Euler simulation of the same jet. It is shown that the selective LES modifies the dynamic properties of the flow to a lesser extent with respect to the classical LES. In particular, the prediction of the enstrophy, mean velocity and density distributions and of the energy and density spectra are substantially improved

Clinical and microbiological characteristics of fungal keratitis in the United States, 20012007: A multicenter study

Objective: To study the epidemiology, clinical observations, and microbiologic characteristics of fungal keratitis at tertiary eye care centers in the United States. Design: Retrospective multicenter case series. Participants: Fungal keratitis cases presenting to participating tertiary eye care centers. Methods: Charts were reviewed for all fungal keratitis cases confirmed by culture, histology, or confocal microscopy between January 1, 2001, and December 31, 2007, at 11 tertiary clinical sites in the United States. Main Outcome Measures: Frequency of potential predisposing factors and associations between these factors and fungal species. Results: A total of 733 cases of fungal keratitis were identified. Most cases were confirmed by culture from corneal scraping (n = 693) or biopsies (n = 19); 16 cases were diagnosed by microscopic examination of corneal scraping alone; and 5 cases were diagnosed by confocal microscopy alone. Some 268 of 733 cases (37%) were associated with refractive contact lens wear, 180 of 733 cases (25%) were associated with ocular trauma, and 209 of 733 cases (29%) were associated with ocular surface disease. No predisposing factor was identified in 76 cases (10%). Filamentous fungi were identified in 141 of 180 ocular trauma cases (78%) and in 231 of 268 refractive contact lens-associated cases (86%). Yeast was the causative organism in 111 of 209 cases (53%) associated with ocular surface disease. Yeast accounted for few cases of fungal keratitis associated with refractive contact-lens wear (20 cases), therapeutic contact-lens wear (11 cases), or ocular trauma (21 cases). Surgical intervention was undertaken in 26% of cases and was most frequently performed for fungal keratitis associated with ocular surface disease (44%). Surgical intervention was more likely in cases associated with filamentous fungi (P = 0.03). Among contact lens wearers, delay in diagnosis of 2 or more weeks increased the likelihood of surgery (age-adjusted odds ratio = 2.2; 95% confidence interval, 1.24.2). Conclusions: Trauma, contact lens wear, and ocular surface disease predispose patients to developing fungal keratitis. Filamentous fungi are most frequently the causative organism for fungal keratitis associated with trauma or contact lens wear, whereas yeast is most frequently the causative organism in patients with ocular surface disease. Delay in diagnosis increases the likelihood of surgical intervention for contact lens-associated fungal keratitis. Financial Disclosure(s): Proprietary or commercial disclosure may be found after the references

Inheritance analysis and identification of SNP markers associated with ZYMV resistance in Cucurbita pepo

[EN] Cucurbit crops are economically important worldwide. One of the most serious threats to cucurbit production is Zucchini yellow mosaic virus (ZYMV). Several resistant accessions were identified in Cucurbita moschata and their resistance was introgressed into Cucurbita pepo. However, the mode of inheritance of ZYMV resistance in C. pepo presents a great challenge to attempts at introgressing resistance into elite germplasm. The main goal of this work was to analyze the inheritance of ZYMV resistance and to identify markers associated with genes conferring resistance. An Illumina GoldenGate assay allowed us to assess polymorphism among nine squash genotypes and to discover six polymorphic single-nucleotide polymorphisms (SNPs) between two near-isogenic lines, "True French" (susceptible to ZYMV) and Accession 381e (resistant to ZYMV). Two F-2 and three BC1 populations obtained from crossing the ZYMV-resistant Accession 381e with two susceptible ones, the zucchini True French and the cocozelle "San Pasquale," were assayed for ZYMV resistance. Molecular analysis revealed an approximately 90% association between SNP1 and resistance, which was confirmed using High Resolution Melt (HRM) and a CAPS marker. Co-segregation up to 72% in populations segregating for resistance was observed for two other SNP markers that could be potentially linked to genes involved in resistance expression. A functional prediction of proteins involved in the resistance response was performed on genome scaffolds containing the three SNPs of interest. Indeed, 16 full-length pathogen recognition genes (PRGs) were identified around the three SNP markers. In particular, we discovered that two nucleotide-binding site leucine-rich repeat (NBS-LRR) protein-encoding genes were located near the SNP1 marker. 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A Probiotic Adjuvant Lactobacillus rhamnosus Enhances Specific Immune Responses after Ocular Mucosal Immunization with Chlamydial Polymorphic Membrane Protein C

Recent advances in the development of chlamydia vaccines, using live-attenuated or ultraviolet light-inactivated chlamydia, are paving the way for new possibilities to oppose the societal challenges posed by chlamydia-related diseases, such as blinding trachoma. An effective subunit vaccine would mitigate the risks associated with the use of a whole-cell vaccine. Our rationale for the design of an efficient subunit vaccine against Chlamydia trachomatis (Ct) is based on the membrane proteins involved in the initial Ct-host cell contact and on the route of immunization that mimics the natural infection process (i.e., via the ocular mucosa). The first aim of our study was to characterize the specific conjunctival and vaginal immune responses following eye drop immunization in BALB/c mice, using the N-terminal portion of the Ct serovar E polymorphic membrane protein C (N-PmpC) as the subunit vaccine antigen. Second, we aimed to examine the adjuvant properties of the probiotic Lactobacillus rhamnosus (LB) when formulated with N-PmpC. N-PmpC applied alone stimulated the production of N-PmpC-and Ct serovar B-specific antibodies in serum, tears and vaginal washes, whereas the combination with LB significantly enhanced these responses. The N-PmpC/LB combination initiated a T cell response characterized by an elevated percentage of CD25+ T cells and CD8+ effector T cells, enhanced CD4+ T-helper 1 skewing, and increased regulatory T cell responses. Together, these results show that eye drop vaccination with combined use of N-PmpC and a live probiotic LB stimulates specific cellular and humoral immune responses, not only locally in the conjunctiva but also in the vaginal mucosa, which could be a promising approach in Ct vaccine development

Combinations of QT-prolonging drugs: towards disentangling pharmacokinetic and pharmaco-dynamic effects in their potentially additive nature.

Background: Whether arrhythmia risks will increase if drugs with electrocardiographic (ECG) QT-prolonging properties are combined is generally supposed but not well studied. Based on available evidence, the Arizona Center for Education and Research on Therapeutics (AZCERT) classification defines the risk of QT prolongation for exposure to single drugs. We aimed to investigate how combining AZCERT drug categories impacts QT duration and how relative drug exposure affects the extent of pharmacodynamic drug–drug interactions. Methods: In a cohort of 2558 psychiatric inpatients and outpatients, we modeled whether AZCERT class and number of coprescribed QT-prolonging drugs correlates with observed rate-corrected QT duration (QTc) while also considering age, sex, inpatient status, and other QTc-prolonging risk factors. We concurrently considered administered drug doses and pharmacokinetic interactions modulating drug clearance to calculate individual weights of relative exposure with AZCERT drugs. Because QTc duration is concentration-dependent, we estimated individual drug exposure with these drugs and included this information as weights in weighted regression analyses. Results: Drugs attributing a ‘known’ risk for clinical consequences were associated with the largest QTc prolongations. However, the presence of at least two versus one QTc-prolonging drug yielded nonsignificant prolongations [exposure-weighted parameter estimates with 95% confidence intervals for ‘known’ risk drugs + 0.93 ms (–8.88;10.75)]. Estimates for the ‘conditional’ risk class increased upon refinement with relative drug exposure and coadministration of a ‘known’ risk drug as a further risk factor. Conclusions: These observations indicate that indiscriminate combinations of QTc-prolonging drugs do not necessarily result in additive QTc prolongation and suggest that QT prolongation caused by drug combinations strongly depends on the nature of the combination partners and individual drug exposure. Concurrently, it stresses the value of the AZCERT classification also for the risk prediction of combination therapies with QT-prolonging drugs

SJS/TEN 2019: From Science to Translation

Stevens-Johnson syndrome and toxic epidermal necrolysis (SJS/TEN) are potentially life-threatening, immune-mediated adverse reactions characterized by widespread erythema, epidermal necrosis, and detachment of skin and mucosa. Efforts to grow and develop functional international collaborations and a multidisciplinary interactive network focusing on SJS/TEN as an uncommon but high burden disease will be necessary to improve efforts in prevention, early diagnosis and improved acute and long-term management. SJS/TEN 2019: From Science to Translation was a 1.5-day scientific program held April 26-27, 2019, in Vancouver, Canada. The meeting successfully engaged clinicians, researchers, and patients and conducted many productive discussions on research and patient care needs

SJS/TEN 2019: From science to translation.

Stevens-Johnson syndrome and toxic epidermal necrolysis (SJS/TEN) are potentially life-threatening, immune-mediated adverse reactions characterized by widespread erythema, epidermal necrosis, and detachment of skin and mucosa. Efforts to grow and develop functional international collaborations and a multidisciplinary interactive network focusing on SJS/TEN as an uncommon but high burden disease will be necessary to improve efforts in prevention, early diagnosis and improved acute and long-term management. SJS/TEN 2019: From Science to Translation was a 1.5-day scientific program held April 26-27, 2019, in Vancouver, Canada. The meeting successfully engaged clinicians, researchers, and patients and conducted many productive discussions on research and patient care needs