The syn-rift sedimentary cover of the North Biscay Margin (bay of Biscay) : from new reflection seismic data

Le Bassin armoricain est un bassin sédimentaire profond situé au nord du golfe de Gascogne. Faute de données suffisantes, l’âge du bassin et son appartenance au domaine océanique ou à la marge armoricaine ont fait l’objet de nombreuses spéculations. Cette nouvelle étude sismo-stratigraphique, fondée sur une couverture dense de sismique réflexion, montre que la sédimentation dans le Bassin armoricain débute à l’Aptien, contemporaine de la dernière phase tectonique du rifting de la marge. La première formation sédimentaire de ce bassin, identifiée sous le nom de « couche 3B » et caractérisée par un faciès sismique chaotique et transparent, se serait mise en place par glissement dans la phase terminale du rifting lors de l’effondrement final de la marge, juste avant le début de l’ouverture océanique. Les nouvelles données de sismique réflexion apportent aussi des informations sur l’évolution polyphasée de la marge pendant son rifting. Deux événements se sont produits au Crétacé inférieur, l’un anté-Berriasien, l’autre Aptien, séparés par une période de calme entre le Berriasien supérieur et l’Aptien inférieur. Le premier événement est responsable de la structurationde la marge enblocs crustaux, le second de sonef fondrement et de la mise enplace des sédiments allochtones dans le Bassin armoricain

Processes controlling very low sedimentation rates on the continental slope of the Gonone-Orosei canyon system, NE Sardinia—terrestrial and oceanic significance

© 2014, Springer-Verlag Berlin Heidelberg. The narrow shelf and upper slope immediately above the Gonone canyon head off NE Sardinia represent areas of very low sedimentation rates. Along the sides of the canyon head (1,600 m water depth), the sediment deposits are homogeneous but show alternating light-grey intervals rich in carbonate and dark-grey ones rich in organic matter, possibly related to distal turbidite processes. Deposits older than 50,000 years are already encountered at core depths of 2.50 m, the sedimentation rates varying from 6–21 cm/103 years in the lower parts of two cores and from 1.5–3 cm/103 years in the upper parts. At about 35,000 years BP, both cores show a simultaneous drop in sedimentation rate by a factor of 3, probably in response to local mechanisms of channel avulsion. Lithological, mineralogical and geochemical properties reveal the environmental factors which are responsible for the extremely slow sediment accumulation. The southernmost sector of the coast, and partly also of the shelf, consists of Jurassic limestones which supply only small amounts of fine-grained material transported in suspension. During the last sea-level highstand, the accumulation of the Cedrino River pro-delta remained restricted to the coast, the low siliciclastic sediment yields resulting in poor shelf sediment trapping. The present morphology of the canyon head prevented the occurrence of gravity processes in the deeper part of the canyon system, including the coring sites. Accordingly, deposition was mainly fed by hemipelagic material of planktonic origin, together with only moderate terrigenous inputs. On a wider late Pleistocene timescale, seismic data indicate the occurrence of a coarse-grained, layered turbidite facies, implying a very different architecture of the canyon drainage system probably prior to 60,000 years BP

The <i>N</i>-myristoylome of <i>Trypanosoma cruzi</i>

Protein N-myristoylation is catalysed by N-myristoyltransferase (NMT), an essential and druggable target in Trypanosoma cruzi, the causative agent of Chagas’ disease. Here we have employed whole cell labelling with azidomyristic acid and click chemistry to identify N-myristoylated proteins in different life cycle stages of the parasite. Only minor differences in fluorescent-labelling were observed between the dividing forms (the insect epimastigote and mammalian amastigote stages) and the non-dividing trypomastigote stage. Using a combination of label-free and stable isotope labelling of cells in culture (SILAC) based proteomic strategies in the presence and absence of the NMT inhibitor DDD85646, we identified 56 proteins enriched in at least two out of the three experimental approaches. Of these, 6 were likely to be false positives, with the remaining 50 commencing with amino acids MG at the N-terminus in one or more of the T. cruzi genomes. Most of these are proteins of unknown function (32), with the remainder (18) implicated in a diverse range of critical cellular and metabolic functions such as intracellular transport, cell signalling and protein turnover. In summary, we have established that 0.43–0.46% of the proteome is N-myristoylated in T. cruzi approaching that of other eukaryotic organisms (0.5–1.7%)

Formation and deformation of hyperextended rift systems: Insights from rift domain mapping in the Bay of Biscay-Pyrenees

International audienceThe Bay of Biscay and the Pyrenees correspond to a Lower Cretaceous rift system including both oceanic and hyperextended rift domains. The transition from preserved oceanic and rift domains in the West to their complete inversion in the East enables us to study the progressive reactivation of a hyperextended rift system. We use seismic interpretation, gravity inversion, and field mapping to identify and map former rift domains and their subsequent reactivation. We propose a new map and sections across the system illustrating the progressive integration of the rift domains into the orogen. This study aims to provide insights on the formation of hyperextended rift systems and discuss their role during reactivation. Two spatially and temporally distinct rift systems can be distinguished: the Bay of Biscay-Parentis and the Pyrenean-Basque-Cantabrian rifts. While the offshore Bay of Biscay represent a former mature oceanic domain, the fossil remnants of hyperextended domains preserved onshore in the Pyrenean-Cantabrian orogen record distributed extensional deformation partitioned between strongly segmented rift basins. Reactivation initiated in the exhumed mantle domain before it affected the hyperthinned domain. Both domains accommodated most of the shortening. The final architecture of the orogen is acquired once the conjugate necking domains became involved in collisional processes. The complex 3-D architecture of the initial rift system may partly explain the heterogeneous reactivation of the overall system. These results have important implications for the formation and reactivation of hyperextended rift systems and for the restoration of the Bay of Biscay and Pyrenean domain

Motif co-regulation and co-operativity are common mechanisms in transcriptional, post-transcriptional and post-translational regulation

A substantial portion of the regulatory interactions in the higher eukaryotic cell are mediated by simple sequence motifs in the regulatory segments of genes and (pre-)mRNAs, and in the intrinsically disordered regions of proteins. Although these regulatory modules are physicochemically distinct, they share an evolutionary plasticity that has facilitated a rapid growth of their use and resulted in their ubiquity in complex organisms. The ease of motif acquisition simplifies access to basal housekeeping functions, facilitates the co-regulation of multiple biomolecules allowing them to respond in a coordinated manner to changes in the cell state, and supports the integration of multiple signals for combinatorial decision-making. Consequently, motifs are indispensable for temporal, spatial, conditional and basal regulation at the transcriptional, post-transcriptional and post-translational level. In this review, we highlight that many of the key regulatory pathways of the cell are recruited by motifs and that the ease of motif acquisition has resulted in large networks of co-regulated biomolecules. We discuss how co-operativity allows simple static motifs to perform the conditional regulation that underlies decision-making in higher eukaryotic biological systems. We observe that each gene and its products have a unique set of DNA, RNA or protein motifs that encode a regulatory program to define the logical circuitry that guides the life cycle of these biomolecules, from transcription to degradation. Finally, we contrast the regulatory properties of protein motifs and the regulatory elements of DNA and (pre-)mRNAs, advocating that co-regulation, co-operativity, and motif-driven regulatory programs are common mechanisms that emerge from the use of simple, evolutionarily plastic regulatory modules

Processes controlling very low sedimentation rates on the continental slope of the Gonone-Orosei canyon system, NE Sardinia—terrestrial and oceanic significance

© 2014, Springer-Verlag Berlin Heidelberg. The narrow shelf and upper slope immediately above the Gonone canyon head off NE Sardinia represent areas of very low sedimentation rates. Along the sides of the canyon head (1,600 m water depth), the sediment deposits are homogeneous but show alternating light-grey intervals rich in carbonate and dark-grey ones rich in organic matter, possibly related to distal turbidite processes. Deposits older than 50,000 years are already encountered at core depths of 2.50 m, the sedimentation rates varying from 6–21 cm/103 years in the lower parts of two cores and from 1.5–3 cm/103 years in the upper parts. At about 35,000 years BP, both cores show a simultaneous drop in sedimentation rate by a factor of 3, probably in response to local mechanisms of channel avulsion. Lithological, mineralogical and geochemical properties reveal the environmental factors which are responsible for the extremely slow sediment accumulation. The southernmost sector of the coast, and partly also of the shelf, consists of Jurassic limestones which supply only small amounts of fine-grained material transported in suspension. During the last sea-level highstand, the accumulation of the Cedrino River pro-delta remained restricted to the coast, the low siliciclastic sediment yields resulting in poor shelf sediment trapping. The present morphology of the canyon head prevented the occurrence of gravity processes in the deeper part of the canyon system, including the coring sites. Accordingly, deposition was mainly fed by hemipelagic material of planktonic origin, together with only moderate terrigenous inputs. On a wider late Pleistocene timescale, seismic data indicate the occurrence of a coarse-grained, layered turbidite facies, implying a very different architecture of the canyon drainage system probably prior to 60,000 years BP

Processes controlling very low sedimentation rates on the continental slope of the Gonone-Orosei canyon system, NE Sardinia—terrestrial and oceanic significance

© 2014, Springer-Verlag Berlin Heidelberg. The narrow shelf and upper slope immediately above the Gonone canyon head off NE Sardinia represent areas of very low sedimentation rates. Along the sides of the canyon head (1,600 m water depth), the sediment deposits are homogeneous but show alternating light-grey intervals rich in carbonate and dark-grey ones rich in organic matter, possibly related to distal turbidite processes. Deposits older than 50,000 years are already encountered at core depths of 2.50 m, the sedimentation rates varying from 6–21 cm/103 years in the lower parts of two cores and from 1.5–3 cm/103 years in the upper parts. At about 35,000 years BP, both cores show a simultaneous drop in sedimentation rate by a factor of 3, probably in response to local mechanisms of channel avulsion. Lithological, mineralogical and geochemical properties reveal the environmental factors which are responsible for the extremely slow sediment accumulation. The southernmost sector of the coast, and partly also of the shelf, consists of Jurassic limestones which supply only small amounts of fine-grained material transported in suspension. During the last sea-level highstand, the accumulation of the Cedrino River pro-delta remained restricted to the coast, the low siliciclastic sediment yields resulting in poor shelf sediment trapping. The present morphology of the canyon head prevented the occurrence of gravity processes in the deeper part of the canyon system, including the coring sites. Accordingly, deposition was mainly fed by hemipelagic material of planktonic origin, together with only moderate terrigenous inputs. On a wider late Pleistocene timescale, seismic data indicate the occurrence of a coarse-grained, layered turbidite facies, implying a very different architecture of the canyon drainage system probably prior to 60,000 years BP

Processes controlling very low sedimentation rates on the continental slope of the Gonone-Orosei canyon system, NE Sardinia—terrestrial and oceanic significance

© 2014, Springer-Verlag Berlin Heidelberg. The narrow shelf and upper slope immediately above the Gonone canyon head off NE Sardinia represent areas of very low sedimentation rates. Along the sides of the canyon head (1,600 m water depth), the sediment deposits are homogeneous but show alternating light-grey intervals rich in carbonate and dark-grey ones rich in organic matter, possibly related to distal turbidite processes. Deposits older than 50,000 years are already encountered at core depths of 2.50 m, the sedimentation rates varying from 6–21 cm/103 years in the lower parts of two cores and from 1.5–3 cm/103 years in the upper parts. At about 35,000 years BP, both cores show a simultaneous drop in sedimentation rate by a factor of 3, probably in response to local mechanisms of channel avulsion. Lithological, mineralogical and geochemical properties reveal the environmental factors which are responsible for the extremely slow sediment accumulation. The southernmost sector of the coast, and partly also of the shelf, consists of Jurassic limestones which supply only small amounts of fine-grained material transported in suspension. During the last sea-level highstand, the accumulation of the Cedrino River pro-delta remained restricted to the coast, the low siliciclastic sediment yields resulting in poor shelf sediment trapping. The present morphology of the canyon head prevented the occurrence of gravity processes in the deeper part of the canyon system, including the coring sites. Accordingly, deposition was mainly fed by hemipelagic material of planktonic origin, together with only moderate terrigenous inputs. On a wider late Pleistocene timescale, seismic data indicate the occurrence of a coarse-grained, layered turbidite facies, implying a very different architecture of the canyon drainage system probably prior to 60,000 years BP