Turbulence Nonlinearities Shed Light on Geometric Asymmetry in Tokamak Confinement Transitions

A comprehensive study of fully frequency-resolved nonlinear kinetic energy transfer has been performed for the first time in a diverted tokamak, providing new insight into the parametric dependences of edge turbulence transitions. Measurements using gas puff imaging in the turbulent L-mode state illuminate the source of the long known but as yet unexplained "favorable-unfavorable" geometric asymmetry of the power threshold for transition to the turbulence-suppressed H mode. Results from the recently discovered I mode point to a competition between zonal flow (ZF) and geodesic-acoustic modes (GAM) for turbulent energy, while showing new evidence that the I-to-H transition is still dominated by ZFs. The availability of nonlinear drive for the GAM against net heat flux through the edge corresponds very well to empirical scalings found experimentally for accessing the I mode

Physics of zonal flows

Zonal flows, which means azimuthally symmetric band-like shear flows, are ubiquitous phenomena in nature and the laboratory. It is now widely recognized that zonal flows are a key constituent in virtually all cases and regimes of drift wave turbulence, indeed, so much so that this classic problem is now frequently referred to as "drift wave-zonal flow turbulence." In this review, new viewpoints and unifying concepts are presented, which facilitate understanding of zonal flow physics, via theory, computation and their confrontation with the results of laboratory experiment. Special emphasis is placed on identifying avenues for further progress

Physics of Zonal Flows

Zonal flows, which means azimuthally symmetric band-like shear flows, are ubiquitous phenomena in nature and the laboratory. It is now widely recognized that zonal flows are a key constituent in virtually all cases and regimes of drift wave turbulence, indeed, so much so that this classic problem is now frequently referred to as "drift wave-zonal flow turbulence." In this review, new viewpoints and unifying concepts are presented, which facilitate understanding of zonal flow physics, via theory, computation and their confrontation with the results of laboratory experiment. Special emphasis is placed on identifying avenues for further progress

Fast Low-to-High Confinement Mode Bifurcation Dynamics in a Tokamak Edge Plasma Gyrokinetic Simulation

Transport barrier formation and its relation to sheared flows in fluids and plasmas are of fundamental interest in various natural and laboratory observations and of critical importance in achieving an economical energy production in a magnetic fusion device. Here we report the first observation of an edge transport barrier formation event in an electrostatic gyrokinetic simulation carried out in a realistic diverted tokamak edge geometry under strong forcing by a high rate of heat deposition. The results show that turbulent Reynolds-stress-driven sheared E×B flows act in concert with neoclassical orbit loss to quench turbulent transport and form a transport barrier just inside the last closed magnetic flux surface

Driving calmodulin protein towards conformational shift by changing ionization states of select residues

Proteins are complex systems made up of many conformational sub-states which are mainly determined by the folded structure. External factors such as solvent type, temperature, pH and ionic strength play a very important role in the conformations sampled by proteins. Here we study the conformational multiplicity of calmodulin (CaM) which is a protein that plays an important role in calcium signaling pathways in the eukaryotic cells. CaM can bind to a variety of other proteins or small organic compounds, and mediates different physiological processes by activating various enzymes. Binding of calcium ions and proteins or small organic molecules to CaM induces large conformational changes that are distinct to each interacting partner. In particular, we discuss the effect of pH variation on the conformations of CaM. By using the pKa values of the charged residues as a basis to assign protonation states, the conformational changes induced in CaM by reducing the pH are studied by molecular dynamics simulations. Our current view suggests that at high pH, barrier crossing to the compact form is prevented by repulsive electrostatic interactions between the two lobes. At reduced pH, not only is barrier crossing facilitated by protonation of residues, but also conformations which are on average more compact are attained. The latter are in accordance with the fluorescence resonance energy transfer experiment results of other workers. The key events leading to the conformational change from the open to the compact conformation are (i) formation of a salt bridge between the N-lobe and the linker, stabilizing their relative motions, (ii) bending of the C-lobe towards the N-lobe, leading to a lowering of the interaction energy between the two-lobes, (iii) formation of a hydrophobic patch between the two lobes, further stabilizing the bent conformation by reducing the entropic cost of the compact form, (iv) sharing of a Ca+2 ion between the two lobes

Recent progress towards a physics-based understanding of the H-mode transition

Results from recent experiment and numerical simulation point towards a picture of the L-H transition in which edge shear flows interacting with edge turbulence create the conditions needed to produce a non-zero turbulent Reynolds stress at and just inside the LCFS during L-mode discharges. This stress acts to reinforce the shear flow at this location and the flow drive gets stronger as heating is increased. The L-H transition ensues when the rate of work done by this stress is strong enough to drive the shear flow to large values, which then grows at the expense of the turbulence intensity. The drop in turbulence intensity momentarily reduces the heat flux across the magnetic flux surface, which then allows the edge plasma pressure gradient to build. A sufficiently strong ion pressure gradient then locks in the H-mode state. These results are in general agreement with previously published reduced 0D and 1D predator prey models. An extended predator-prey model including separate ion and electron heat channels yields a non-monotonic power threshold dependence on plasma density provided that the fraction of heat deposited on the ions increases with plasma density. Possible mechanisms to explain other macroscopic transition threshold criteria are identified. A number of open questions and unexplained observations are identified, and must be addressed and resolved in order to build a physics-based model that can yield predictions of the macroscopic conditions needed for accessing H-mode

Zonal flow production in the L–H transition in Alcator C-Mod

Transitions of tokamak confinement regimes from low- to high-confinement are studied on Alcator C-Mod (Hutchinson et al 1994 Phys. Plasmas 1 1511) tokamak using gas-puff-imaging, with a focus on the interaction between the edge drift-turbulence and the local shear flow. Results show that the nonlinear turbulent kinetic energy transfer rate into the shear flow becomes comparable to the estimated value of the drift turbulence growth rate at the time the turbulent kinetic energy starts to drop, leading to a net energy transfer that is comparable to the observed turbulence losses. A corresponding growth is observed in the shear flow kinetic energy. The above behavior is demonstrated across a series of experiments. Thus both the drive of the edge zonal flow and the initial reduction of turbulence fluctuation power are shown to be consistent with a lossless kinetic energy conversion mechanism, which consequently mediates the transition into H-mode. The edge pressure gradient is then observed to build on a slower (1ms) timescale, locking in the H-mode state. These results unambiguously establish the time sequence of the transition as: first the peaking of the normalized Reynolds power, then the collapse of the turbulence, and finally the rise of the diamagnetic electric field shear as the L-H transition occurs. © 2014 IOP Publishing Ltd

Sources and distribution of fresh water around Cape Farewell in 2014

We investigate the origin of freshwater on the shelves near Cape Farewell (south Greenland) using sections of three hydrographic cruises in May (HUD2014007) and June 2014 (JR302 and Geovide) 2014. We partition the freshwater between meteoric water sources and sea ice melt or brine formation using the δ18O of sea water. The sections illustrate the presence of the East Greenland Coastal Current (EGCC) close to shore east of Cape Farewell. West of Cape Farewell, it partially joins the shelf break, with a weaker near‐surface remnant of the EGCC observed on the shelf southwest and west of Cape Farewell. The EGCC traps the freshest waters close to Greenland, and carries a brine signature below 50m depth. The cruises illustrate a strong increase in meteoric water of the shelf upper layer (by more than a factor 2) between early May and late June, likely to result from East and South Greenland spring melt. There was also a contribution of sea ice melt near the surface but with large variability both spatially and also between the two June cruises. Furthermore, gradients in the freshwater distribution and its contributions are larger east of Cape Farewell than west of Cape Farewell, which is related to the East Greenland Coastal Current being more intense and closer to the coast east of Cape Farewell than west of it. Large temporal variability in the currents is found between different sections to the east and south‐east of Cape Farewell, likely related to changes in wind conditions