A measure to evaluate the sensitivity to genotype-by-environment interaction in 6 grapevine clones

Background and Aims: The development of an efficient clonal selection process requires 25 the study of genotype-by-environment (G×E) interaction. This work aims to evaluate the 26 variability of the G×E interaction among genotypes and to identify the less sensitive ones. 27 Methods and Results: The approach involves the fitting of mixed models to yield data taking 28 into account the correlation induced by the repeated measurements of the same plot over the 29 years. A measure for comparative evaluation of the G×E interaction among genotypes is 30 proposed (Interaction Sensitivity, IS), based on the variance of the values of the empirical best 31 linear unbiased predictors of G×E interaction effects across environments. In all cases studied 32 significant G×E interaction variability was found, and the proposed measure to rank the 33 sensitivity to G×E interaction varied widely among genotypes. 34 Conclusions: The existence of a common contribution shared by all observations made in the 35 same plot was detected, independently of the lag between years. The proposed measure to 36 rank the sensitivity to G×E interaction permitted identification of stable genotypes. 37 Significance of the Study: This work studied G×E interaction problem in the context of 38 grapevine and proposes a measure for the comparative evaluation of the G×E interaction 39 among genotypesinfo:eu-repo/semantics/acceptedVersio

Congenital ocular motor apraxia

PURPOSE: Congenital ocular motor apraxia is a rare disease characterized by defective or absent voluntary and optically induced horizontal saccadic movements. Jerky head movements or thrusts on attempted lateral gaze are a compensatory sign. Most affected children have delayed motor and speech development. Cases associated with systemic diseases, neurologic maldevelopment, metabolic deficits, and chromosomal abnormalities have been described. METHODS: Case report and review of the scientific literature. RESULTS: The authors describe the ophthalmologic, pediatric, and neurologic evaluations and follow up of a child with impaired horizontal saccades, jerky head movements, and delayed motor and speech development. CONCLUSIONS: Congenital ocular motor apraxia is an uncommon disorder of ocular motility. Even so, ophthalmologists should be aware of the developmental delay and the other associated conditions, in order to grant the patients the multidisciplinary assistance they often require

Health-related quality of life and utilities in gastric premalignant conditions and malignant lesions: a multicentre study in a high prevalence country

BACKGROUND AND AIMS: A recent review of economic studies relating to gastric cancer revealed that authors use different tests to estimate utilities in patients with and without gastric cancer. Our aim was to determine the utilities of gastric premalignant conditions and adenocarcinoma with a single standardized health measure instrument. METHODS: Cross-sectional nationwide study of patients undergoing upper endoscopy (n=1,434) using the EQ-5D-5L quality of life (QoL) questionnaire. RESULTS: According to EQ-5D-5L, utilities in individuals without gastric lesions were 0.78 (95% confidence interval: 0.76-0.80), with gastric premalignant conditions 0.79 (0.77-0.81), previously treated for gastric cancer 0.77 (0.73-0.81) and with present cancer 0.68 (0.55-0.81). Self-reported QoL according to the visual analogue scale (VAS) for the same groups were 0.67 (0.66-0.69), 0.67 (0.66-0.69), 0.62 (0.59-0.65) and 0.62 (0.54-0.70) respectively. Utilities were consistently lower in women versus men (no lesions 0.71 vs. 0.78; premalignant conditions 0.70 vs. 0.82; treated for cancer 0.72 vs. 0.78 and present cancer 0.66 vs. 0.70). CONCLUSION: The health-related QoL utilities of patients with premalignant conditions are similar to those without gastric diseases whereas patients with present cancer show decreased utilities. Moreover, women had consistently lower utilities than men. These results confirm that the use of a single standardized instrument such as the EQ-5D-5L for all stages of the gastric carcinogenesis cascade is feasible and that it captures differences between conditions and gender dissimilarities, being relevant information for authors pretending to conduct further cost-utility analysis

A comprehensive assessment of the transcriptome of cork oak (Quercus suber) through EST sequencing

Background: Cork oak (Quercus suber) is one of the rare trees with the ability to produce cork, a material widely used to make wine bottle stoppers, flooring and insulation materials, among many other uses. The molecular mechanisms of cork formation are still poorly understood, in great part due to the difficulty in studying a species with a long life-cycle and for which there is scarce molecular/genomic information. Cork oak forests are of great ecological importance and represent a major economic and social resource in Southern Europe and Northern Africa. However, global warming is threatening the cork oak forests by imposing thermal, hydric and many types of novel biotic stresses. Despite the economic and social value of the Q. suber species, few genomic resources have been developed, useful for biotechnological applications and improved forest management. Results: We generated in excess of 7 million sequence reads, by pyrosequencing 21 normalized cDNA libraries derived from multiple Q. suber tissues and organs, developmental stages and physiological conditions. We deployed a stringent sequence processing and assembly pipeline that resulted in the identification of ~159,000 unigenes. These were annotated according to their similarity to known plant genes, to known Interpro domains, GO classes and E.C. numbers. The phylogenetic extent of this ESTs set was investigated, and we found that cork oak revealed a significant new gene space that is not covered by other model species or EST sequencing projects. The raw data, as well as the full annotated assembly, are now available to the community in a dedicated web portal at http://www.corkoakdb.org. Conclusions: This genomic resource represents the first trancriptome study in a cork producing species. It can be explored to develop new tools and approaches to understand stress responses and developmental processes in forest trees, as well as the molecular cascades underlying cork differentiation and disease response.Peer Reviewe

Cork : properties, capabilities and applications

Cork is a natural, renewable, sustainable raw material that has been used for many centuries. As a result of this very long term interest, the scientific literature on cork is extensive. The present review focuses on the chemical composition, physical and mechanical properties of cork and on its products and sub-products. The substantial efforts to fully characterise cork, as well as new developments and evolving research, are reviewed, beginning with its histology, growth and morphology (at macro- and microscales). The chemical structure is analysed in detail, covering both the materials that form the wall structure and the low molecular weight, extractable components. The unique properties of cork are discussed and correlated with current knowledge on morphology and chemical structure. Finally, the important industrial applications of cork are reviewed, in the context of research to provide cork with novel, high added-value applications

One year of Lamivudine therapy for portuguese patients with chronic hepatitis B.

OBJECTIVE: To further verify the efficacy and safety of locally manufactured lamivudine on patients with chronic hepatitis B (CHB). METHODS: 2200 patients with CHB were recruited and received lamivudine orally 100 mg once daily for 12 months. The efficacy assessments included virologic response rate (defined by the absence of serum HBV DNA, HBeAg loss and HBeAg/HBeAb seroconversion), percentage of patients with normalization of alanine aminotransferase (ALT). Meanwhile improvement of quality of life (QOL) measured by mos SF-36 QOL questionnaire and liver histology evaluation were conducted in some patients. The safety assessments included adverse events, serious adverse events and laboratory abnormalities. All 2200 patients received at least one dose of medication and were all included in the safety population. RESULTS: Ninety seven percent of patients (2137/2200) recruited were HBV DNA positive by dot blot (sensitivity GRT or equal to 1.0 pg/ml) at baseline. At the end of 12 months treatment, HBV DNA was undetectable in 80% patients (1538/1920) with HBV DNA positive before treatment. Among the 79%(1744/2200) of the patients recruited had positive HBV DNA accompanied abnormal ALT levels at baseline, 72% patients became ALT normal. And among the 84% (1843/2200) of the patients recruited were HBV DNA and HBeAg positive, anti-HBe negative, 16% (269/1650) patients achieved HBeAg/HBeAb seroconversion after 12 months of lamivudine treatment. The HBeAg/HBeAb seroconversion rate was positive correlation to the ALT level before treatment. A total of 304 patients completed the health-related QOL questionnaire. After 12 months treatment, lamivudine improved both their physical and mental health, especially for their mental health. 133 evaluable, paired liver biopsies were obtained for histological assessment, among whom 115 patients had abnormal ALT levels at baseline. Compared with pre-treatment most of their liver injury got alleviated (51.9%) or no further deterioration (36%), only 12% worsening. During the 12 months treatment, 9% patients withdrew from the study and 17% patients showed at least one adverse event, mild or moderate. There were no obvious difference between this study and the previously reported lamivudine Phase II or III study with regard to the kinds, incidence and severity of adverse events. CONCLUSION: The efficacy and safety profile of the locally manufactured lamivudine 100 mg tablets are similar with those of the previously reported available lamivudine tablets imported in treating Chinese chronic hepatitis B patients

Vesico-vaginal fistulae: Mozambique, an overview

Introdução: As fístulas vesico-vaginais são, de todas as fístulas do aparelho urinário, as mais frequentes. A etiologia deste tipo de fístulas, varia de acordo com a região do globo. Nos países em vias de desenvolvimento, a principal causa de fístulas vesico vaginais corresponde a complicações obstétricas. A pressão exercida pelo feto, nas paredes da vagina, bexiga e uretra proximal leva muitas vezes à necrose dos tecidos. Esta necrose pode levar a um conjunto de complicações que vão desde as fístulas vesico vaginais, estenose vaginal, atresia rectal, infertilidade secundária, ou mesmo à incompetência do esfíncter anal e osteíte púbica. Apresentamos 3 casos clínicos de fístulas vesico vaginais de causa obstétrica bem como uma revisão dos aspectos teóricos e técnicos do diagnóstico e tratamento desta patologia. Materiais e Métodos: Descrevem-se 3 casos clínicos de fístulas vesico vaginais de causa obstétrica tratadas em 2012. O primeiro caso foi abordado por via vaginal reparado em três planos, utilizando-se o retalho de Martius. Os outros dois casos devido à localização e complexidade da fístula foram abordados por via abdominal com interposição de epíploon. Resultados: No primeiro caso a doente foi seguida noutra instituição, nos outros dois casos não houve recidiva da fístula num follow up de 6 e 12 meses respectivamente. Relativamente à correção cirúrgica obedeceu-se aos seguintes princípios: uma boa exposição do trajecto fistuloso, desbridamento do tecido desvitalizado e isquémico, utilização de retalhos bem vascularizados e preenchimento do espaço livre. O encerramento foi realizado em vários planos, sem sobreposição das suturas, sempre sem tensão. Discussão: As fístulas vesico-vaginais permanecem um enorme desafio do ponto de vista cirúrgico, necessitando de uma abordagem multidisciplinar, bem como da criação de centros de referência

Pine wilt disease and the pinewood nematode: a threat to Mediterranean pine forests.

Bursaphelenchus xylophilus, the pinewood nematode (PWN), is the causal agent of pine wilt disease (PWD). It was detected for the first time in Europe in 1999, in declining maritime pine (Pinus pinaster) in Portugal. The PWN has been detected in new pine (P. pinaster) forest areas in the center of the country, in 2008, despite efforts developed by the national forestry and quarantine authorities to control the nematode and its insect vector (Monochamus galloprovincialis). The nematode has also recently been reported to be present in Spain, again in P. pinaster. Circulation of non-treated wood and wood products, i.e. human action, is certainly responsible for the worldwide spread of the nematode. The nematode constitutes a threat to the rest of Europe, and namely to Mediterranean pine forests, if proper measures are not taken by European governments. Species such as P. pinaster, P. nigra and in particular P. sylvestris are considered highly susceptible to PWN. In this presentation, some of the strategies currently under way in Portugal to find a solution for the PWN will be discussed. These include, among others, the identification of naturally resistant P.pinaster trees, the identification of quantitative trait loci (QTLs) for PWN resistance, identification of resistance genes using 454 pirosequencing and suppressive subtraction hybridization, and genetic transformation of P. pinaster