42 research outputs found

    Nachnutzung der gemeinsamen JOIN2^2 –Repository-Infrastruktur für den KDSF-Objektbereich Publikation?

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    Im Rahmen des JOIN2-Projekts haben Bibliotheks- & Dokumentationseinheiten (Deutsches Elektronensynchrotron DESY Hamburg/Zeuten, Deutsches Krebsforschungszentrum DKFZ Heidelberg, Forschungszentrum Jülich, GSI Helmholtzzentrum für Schwerionenforschung Darmstadt, Maier-Leibnitz-Zentrum Garching, Rheinisch-Westfälische Technische Hochschule (RWTH) Aachen, KIT Institut für experimentelle Kernphysik Karlsruhe) eine gemeinsame Repository-Infrastruktur für ihre Wissenschaftler und Wissenschaftlerinnen geschaffen. Das Poster dokumentiert Überlegungen, welche Anforderungen des Kerndatensatzes Forschung im Objektbereich abgebildet werden können, wo Probleme und fehlende Normierungen in der Praxis auftauchen könnten und vor allem, an welchen Stellen Kompromisse in Hinblick auf die JOIN2-Serviceorientierung für den Wissenschaftsbereich eingegangen werden müssen.Schlagwörter: Repositorium; VeröffentlichungsdatenbankSchwerpunktbereich: Identifikatoren & Anbindung von Drittsystemen, z.B. von Repositorie

    Sulphur flux through the sulphate assimilation pathway is differently controlled by adenosine 5′-phosphosulphate reductase under stress and in transgenic poplar plants overexpressing γ-ECS, SO, or APR

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    Sulphate assimilation provides reduced sulphur for the synthesis of cysteine, methionine, and numerous other essential metabolites and secondary compounds. The key step in the pathway is the reduction of activated sulphate, adenosine 5′-phosphosulphate (APS), to sulphite catalysed by APS reductase (APR). In the present study, [35S]sulphur flux from external sulphate into glutathione (GSH) and proteins was analysed to check whether APR controls the flux through the sulphate assimilation pathway in poplar roots under some stress conditions and in transgenic poplars. (i) O-Acetylserine (OAS) induced APR activity and the sulphur flux into GSH. (ii) The herbicide Acetochlor induced APR activity and results in a decline of GSH. Thereby the sulphur flux into GSH or protein remained unaffected. (iii) Cd treatment increased APR activity without any changes in sulphur flux but lowered sulphate uptake. Several transgenic poplar plants that were manipulated in sulphur metabolism were also analysed. (i) Transgenic poplar plants that overexpressed the γ-glutamylcysteine synthetase (γ-ECS) gene, the enzyme catalysing the key step in GSH formation, showed an increase in sulphur flux into GSH and sulphate uptake when γ-ECS was targeted to the cytosol, while no changes in sulphur flux were observed when γ-ECS was targeted to plastids. (ii) No effect on sulphur flux was observed when the sulphite oxidase (SO) gene from Arabidopsis thaliana, which catalyses the back reaction of APR, that is the reaction from sulphite to sulphate, was overexpressed. (iii) When Lemna minor APR was overexpressed in poplar, APR activity increased as expected, but no changes in sulphur flux were observed. For all of these experiments the flux control coefficient for APR was calculated. APR as a controlling step in sulphate assimilation seems obvious under OAS treatment, in γ-ECS and SO overexpressing poplars. A possible loss of control under certain conditions, that is Cd treatment, Acetochlor treatment, and in APR overexpressing poplar, is discussed

    Sulphur limitation and early sulphur deficiency responses in poplar: significance of gene expression, metabolites, and plant hormones

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    The influence of sulphur (S) depletion on the expression of genes related to S metabolism, and on metabolite and plant hormone contents was analysed in young and mature leaves, fine roots, xylem sap, and phloem exudates of poplar (Populus tremula×Populus alba) with special focus on early consequences. S depletion was applied by a gradual decrease of sulphate availability. The observed changes were correlated with sulphate contents. Based on the decrease in sulphate contents, two phases of S depletion could be distinguished that were denominated as ‘S limitation’ and ‘early S deficiency’. S limitation was characterized by improved sulphate uptake (enhanced root-specific sulphate transporter PtaSULTR1;2 expression) and reduction capacities (enhanced adenosine 5′-phosphosulphate (APS) reductase expression) and by enhanced remobilization of sulphate from the vacuole (enhanced putative vacuolar sulphate transporter PtaSULTR4;2 expression). During early S deficiency, whole plant distribution of S was impacted, as indicated by increasing expression of the phloem-localized sulphate transporter PtaSULTR1;1 and by decreasing glutathione contents in fine roots, young leaves, mature leaves, and phloem exudates. Furthermore, at ‘early S deficiency’, expression of microRNA395 (miR395), which targets transcripts of PtaATPS3/4 (ATP sulphurylase) for cleavage, increased. Changes in plant hormone contents were observed at ‘early S deficiency’ only. Thus, S depletion affects S and plant hormone metabolism of poplar during ‘S limitation’ and ‘early S deficiency’ in a time series of events. Despite these consequences, the impact of S depletion on growth of poplar plants appears to be less severe than in Brassicaceae such as Arabidopsis thaliana or Brassica sp

    The cross-sectional GRAS sample: A comprehensive phenotypical data collection of schizophrenic patients

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    <p>Abstract</p> <p>Background</p> <p>Schizophrenia is the collective term for an exclusively clinically diagnosed, heterogeneous group of mental disorders with still obscure biological roots. Based on the assumption that valuable information about relevant genetic and environmental disease mechanisms can be obtained by association studies on patient cohorts of ≥ 1000 patients, if performed on detailed clinical datasets and quantifiable biological readouts, we generated a new schizophrenia data base, the GRAS (Göttingen Research Association for Schizophrenia) data collection. GRAS is the necessary ground to study genetic causes of the schizophrenic phenotype in a 'phenotype-based genetic association study' (PGAS). This approach is different from and complementary to the genome-wide association studies (GWAS) on schizophrenia.</p> <p>Methods</p> <p>For this purpose, 1085 patients were recruited between 2005 and 2010 by an invariable team of traveling investigators in a cross-sectional field study that comprised 23 German psychiatric hospitals. Additionally, chart records and discharge letters of all patients were collected.</p> <p>Results</p> <p>The corresponding dataset extracted and presented in form of an overview here, comprises biographic information, disease history, medication including side effects, and results of comprehensive cross-sectional psychopathological, neuropsychological, and neurological examinations. With >3000 data points per schizophrenic subject, this data base of living patients, who are also accessible for follow-up studies, provides a wide-ranging and standardized phenotype characterization of as yet unprecedented detail.</p> <p>Conclusions</p> <p>The GRAS data base will serve as prerequisite for PGAS, a novel approach to better understanding 'the schizophrenias' through exploring the contribution of genetic variation to the schizophrenic phenotypes.</p

    Modeling Climate and Management Change Impacts on Water Quality and In-Stream Processes in the Elbe River Basin

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    Eco-hydrological water quality modeling for integrated water resources management of river basins should include all necessary landscape and in-stream nutrient processes as well as possible changes in boundary conditions and driving forces for nutrient behavior in watersheds. The study aims to assess possible impacts of the changing climate (ENSEMBLES climate scenarios) and/or land use conditions on resulting river water quantity and quality in the large-scale Elbe river basin by applying a semi-distributed watershed model of intermediate complexity (SWIM) with implemented in-stream nutrient (N+P) turnover and algal growth processes. The calibration and validation results revealed the ability of SWIM to satisfactorily simulate nutrient behavior at the watershed scale. Analysis of 19 climate scenarios for the whole Elbe river basin showed a projected increase in temperature (+3 °C) and precipitation (+57 mm) on average until the end of the century, causing diverse changes in river discharge (+20%), nutrient loads (NO3-N: −5%; NH4-N: −24%; PO4-P: +5%), phytoplankton biomass (−4%) and dissolved oxygen concentration (−5%) in the watershed. In addition, some changes in land use and nutrient management were tested in order to reduce nutrient emissions to the river network

    Combined Impacts of Medium Term Socio-Economic Changes and Climate Change on Water Resources in a Managed Mediterranean Catchment

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    Climate projections agree on a dryer and warmer future for the Mediterranean. Consequently, the region is likely to face serious problems regarding water availability and quality in the future. We investigated potential climate change impacts, alone (for three scenario periods) and in combination with four socio-economic scenarios (for the near future) on water resources in a Mediterranean catchment, whose economy relies on irrigated agriculture and tourism. For that, the Soil and Water Integrated Model (SWIM) was applied to the drainage area of the Mar Menor coastal lagoon, using a set of 15 climate scenarios and different land use maps and management settings. We assessed the long-term average seasonal and annual changes in generated runoff, groundwater recharge and actual evapotranspiration in the catchment, as well as on water inflow and nutrients input to the lagoon. The projected average annual changes in precipitation are small for the first scenario period, and so are the simulated impacts on all investigated components, on average. The negative trend of potential climate change impacts on water resources (i.e., decrease in all analyzed components) becomes pronounced in the second and third scenario periods. The applied socio-economic scenarios intensify, reduce or even reverse the climate-induced impacts, depending on the assumed land use and management changes

    Comparison of Water Flows in Four European Lagoon Catchments under a Set of Future Climate Scenarios

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    Climate change is supposed to remarkably affect the water resources of coastal lagoons as they are highly vulnerable to changes occurring at their catchment and/or ocean or sea boundaries. Probable impacts of projected climate changes on catchment hydrology and freshwater input were assessed using the eco-hydrological model SWIM (Soil and Water Integrated Model) for the drainage areas of four European lagoons: Ria de Aveiro (Portugal), Mar Menor (Spain), Tyligulskyi Liman (Ukraine) and Vistula Lagoon (Poland/Russia) under a set of 15 climate scenarios covering the time period until the year 2100. Climate change signals for all regions show continuously increasing trends in temperature, but various trends in precipitation. Precipitation is projected to decrease in two catchments on the Iberian Peninsula and increase in the Baltic region catchment, and does not show a clear trend in the catchment located near the Black Sea. The average projected changes in freshwater inputs reflect these changes in climate conditions, but often show variability between the scenarios, in future periods, and within the catchments. According to the individual degrees of water management influences in the four drainage basins, the climate sensitivity of river inflows is differently pronounced in each
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