May Night : Nocturne

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Initiation and spread of escape waves within animal groups

The exceptional reactivity of animal collectives to predatory attacks is thought to be due to rapid, but local, transfer of information between group members. These groups turn together in unison and produce escape waves. However, it is not clear how escape waves are created from local interactions, nor is it understood how these patterns are shaped by natural selection. By startling schools of fish with a simulated attack in an experimental arena, we demonstrate that changes in the direction and speed by a small percentage of individuals that detect the danger initiate an escape wave. This escape wave consists of a densely packed band of individuals that causes other school members to change direction. In the majority of cases this wave passes through the entire group. We use a simulation model to demonstrate that this mechanism can, through local interactions alone, produce arbitrarily large escape waves. In the model, when we set the group density to that seen in real fish schools, we find that the risk to the members at the edge of the group is roughly equal to the risk of those within the group. Our experiments and modelling results provide a plausible explanation for how escape waves propagate in Nature without centralised control

Escape path complexity and its context dependency in Pacific blue-eyes (Pseudomugil signifer)

The escape trajectories animals take following a predatory attack appear to show high degrees of apparent 'randomness' - a property that has been described as 'protean behaviour'. Here we present a method of quantifying the escape trajectories of individual animals using a path complexity approach. When fish (Pseudomugil signifer) were attacked either on their own or in groups, we find that an individual's path rapidly increases in entropy (our measure of complexity) following the attack. For individuals on their own, this entropy remains elevated (indicating a more random path) for a sustained period (10 seconds) after the attack, whilst it falls more quickly for individuals in groups. The entropy of the path is context dependent. When attacks towards single fish come from greater distances, a fish's path shows less complexity compared to attacks that come from short range. This context dependency effect did not exist, however, when individuals were in groups. Nor did the path complexity of individuals in groups depend on a fish's local density of neighbours. We separate out the components of speed and direction changes to determine which of these components contributes to the overall increase in path complexity following an attack. We found that both speed and direction measures contribute similarly to an individual's path's complexity in absolute terms. Our work highlights the adaptive behavioural tactics that animals use to avoid predators and also provides a novel method for quantifying the escape trajectories of animals.Comment: 9 page

A phenomenological theory of nonphotochemical laser induced nucleation

Our analysis of the experimental data related to nonphotochemical laser induced nucleation in solutions leads to the inevitable conclusion that the phase transformation is initiated by particles that are metallic in nature. This conclusion appears paradoxical because the final products are dielectric crystals. We show that the experimental results are well accounted for by the theory of electric field induced nucleation of metallic particles that are elongated in the direction of the field. However, new physical and chemical insights are required to understand the structure of the metallic precursor particles and the kinetics of subsequent dielectric crystallization.Comment: 5 pages 4 figure

Independence from kinetoplast DNA maintenance and expression is associated with multi-drug resistance in Trypanosoma brucei in vitro

It is well known that several antitrypanosomatid drugs accumulate in the parasite's mitochondrion, where they often bind to the organellar DNA, the kinetoplast. To what extent this property relates to the mode of action of these compounds has remained largely unquantified. Here we show that single point mutations that remove the dependence of laboratory strains of the sleeping sickness parasite Trypanosoma brucei on a functional kinetoplast result in significant resistance to the diamidine and phenanthridine drug classes

Beyond Site-Specific Criteria: Conservation of Migratory Birds and Their Habitats from a Network Perspective

Many populations of birds depend on networks of sites to survive. Sufficient connectivity that allows movement between the sites throughout the year is a critical requirement. We found that existing international frameworks and policies for identifying sites important for bird conservation focus more at the level of the individual site than on the site network and its connectivity. Only 21% of site criteria acknowledge the importance of movement networks for birds, and such network criteria were mostly (67%) qualitative. We suggest a three-step quantitative approach for informing conservation about the connectivity of bird movements (especially when migrating) from a network perspective, by reviewing current scientific knowledge. The first step is to construct a bird movement network by identifying sites frequently used by birds as ‘nodes’, and then define ‘edges’ from the probability of non-stop flight between each pair of nodes. The second step is to quantify network connectivity, i.e., the extent to which the site network facilitates bird movements. The last step is to assess the importance of each site from its contribution to network connectivity. This approach can serve as a tool for comprehensive and dynamic monitoring of the robustness of site networks during global change

Beyond Site-Specific Criteria: Conservation of Migratory Birds and Their Habitats from a Network Perspective

Many populations of birds depend on networks of sites to survive. Sufficient connectivity that allows movement between the sites throughout the year is a critical requirement. We found that existing international frameworks and policies for identifying sites important for bird conservation focus more at the level of the individual site than on the site network and its connectivity. Only 21% of site criteria acknowledge the importance of movement networks for birds, and such network criteria were mostly (67%) qualitative. We suggest a three-step quantitative approach for informing conservation about the connectivity of bird movements (especially when migrating) from a network perspective, by reviewing current scientific knowledge. The first step is to construct a bird movement network by identifying sites frequently used by birds as ‘nodes’, and then define ‘edges’ from the probability of non-stop flight between each pair of nodes. The second step is to quantify network connectivity, i.e., the extent to which the site network facilitates bird movements. The last step is to assess the importance of each site from its contribution to network connectivity. This approach can serve as a tool for comprehensive and dynamic monitoring of the robustness of site networks during global change

Quantifying the structure and dynamics of fish shoals under predation threat in three dimensions

Detailed quantifications of how predators and their grouping prey interact in three dimensions (3D) remain rare. Here we record the structure and dynamics of fish shoals (Pseudomugil signifer) in 3D both with and without live predators (Philypnodon grandiceps) under controlled laboratory conditions. Shoals adopted two distinct types of shoal structure; 'sphere-like' geometries at depth, and flat 'carpet-like' structures at the water's surface, with shoals becoming more compact in both horizontal and vertical planes in the presence of a predator. The predators actively stalked and at- tacked the prey, with attacks being initiated when the shoals were not in their usual configurations. These attacks caused the shoals to break apart, but shoal reformation was rapid, and involved individuals adjusting their positions in both horizontal and vertical dimensions. Our analyses revealed that targeted prey were more isolated from other conspecifics, and were closer in terms of distance and direction to the predator compared to non-targeted prey. Moreover, which prey were targeted could largely be identified based on individuals' positions from a single plane. This highlights that previously proposed 2D theoretical models and their assumptions appear valid when considering how predators target groups in 3D. Our work provides experimental, and not just anecdotal, sup- port for classic theoretical predictions, and also lends new insights into predatory-prey interactions in three-dimensional environments

A Thermodynamic Model for Receptor Clustering

Intracellular signaling often arises from ligand-induced oligomerization of cell surface receptors. This oligomerization or clustering process is fundamentally a cooperative behavior between near-neighbor receptor molecules; the properties of this cooperative process clearly affects the signal transduction. Recent investigations have revealed the molecular basis of receptor-receptor interactions, but a simple theoretical framework for using this data to predict cluster formation has been lacking. Here, we propose a simple, coarse-grained, phenomenological model for ligand-modulated receptor interactions and discuss its equilibrium properties via mean-field theory. The existence of a first-order transition for this model has immediate implications regarding the robustness of the cellular signaling response.Comment: Biophysical Journal, to appea