Obvious: a meta-toolkit to encapsulate information visualization toolkits. One toolkit to bind them all

This article describes “Obvious”: a meta-toolkit that abstracts and encapsulates information visualization toolkits implemented in the Java language. It intends to unify their use and postpone the choice of which concrete toolkit(s) to use later-on in the development of visual analytics applications. We also report on the lessons we have learned when wrapping popular toolkits with Obvious, namely Prefuse, the InfoVis Toolkit, partly Improvise, JUNG and other data management libraries. We show several examples on the uses of Obvious, how the different toolkits can be combined, for instance sharing their data models. We also show how Weka and RapidMiner, two popular machine-learning toolkits, have been wrapped with Obvious and can be used directly with all the other wrapped toolkits. We expect Obvious to start a co-evolution process: Obvious is meant to evolve when more components of Information Visualization systems will become consensual. It is also designed to help information visualization systems adhere to the best practices to provide a higher level of interoperability and leverage the domain of visual analytics

Whittaker-Hill equation and semifinite-gap Schroedinger operators

A periodic one-dimensional Schroedinger operator is called semifinite-gap if every second gap in its spectrum is eventually closed. We construct explicit examples of semifinite-gap Schroedinger operators in trigonometric functions by applying Darboux transformations to the Whittaker-Hill equation. We give a criterion of the regularity of the corresponding potentials and investigate the spectral properties of the new operators.Comment: Revised versio

Spall fracture and twinning in laser shock-loaded single-crystal magnesium

As a major failure process in materials subjected to dynamic loading, spall fracture is one of the most widely studied issues in shock physics. To investigate its dependence on the microstructure, including both initial and shock-induced features, laser shock experiments were performed on single crystal magnesium. Shock loading was applied in directions parallel and perpendicular to the c-axis of the crystals. Both the spall strength and the fracture surface morphology are found to depend on the direction of the shock application with respect to crystal orientations. The results complement data obtained previously over ranges of lower strain rates. A detailed analysis of the residual microstructure and crack patterns in the recovered samples shows strong correlations between damage localization and twins, both pre-existing and shock-induced. Thus, cracks match specific twinning directions, which is discussed on the basis of deformation mechanisms reported under quasi-static loading conditions, either prismatic slip or twinning depending on local orientations

On Darboux-Treibich-Verdier potentials

It is shown that the four-parameter family of elliptic functions $$u_D(z)=m_0(m_0+1)\wp(z)+\sum_{i=1}^3 m_i(m_i+1)\wp(z-\omega_i)$$ introduced by Darboux and rediscovered a hundred years later by Treibich and Verdier, is the most general meromorphic family containing infinitely many finite-gap potentials.Comment: 8 page

Animal displacement from marine energy development : Mechanisms and consequences

This work would not be possible without funding support from the U.S. Department of Energy, Energy Efficiency and Renewable Energy Water Power Technologies Office to Pacific Northwest National Laboratory (PNNL) under contract DE-AC05- 76RL01830 . We are grateful to all the international marine energy researchers and regulatory advisors who attended the online Expert Forum hosted by OES-Environmental on December 7th, 2022, and provided feedback and input on an earlier version of this work. We also thank Stephanie King (PNNL) for creating the original illustrations, as well as the anonymous reviewers for their constructive feedback.For marine wave and tidal energy to successfully contribute to global renewable energy goals and climate change mitigation, marine energy projects need to expand beyond small deployments to large-scale arrays. However, with large-scale projects come potential environmental effects not observed at the scales of single devices and small arrays. One of these effects is the risk of displacing marine animals from their preferred habitats or their migration routes, which may increase with the size of arrays and location. Many marine animals may be susceptible to some level of displacement once large marine energy arrays are increasingly integrated into the seascape, including large migratory animals, non-migratory pelagic animals with large home ranges, and benthic and demersal mobile organisms with more limited ranges, among many others. Yet, research around the mechanisms and effects of displacement have been hindered by the lack of clarity within the international marine energy community regarding the definition of displacement, how it occurs, its consequences, species of concern, and methods to investigate the outcomes. This review paper leveraged lessons learned from other industries, such as offshore development, to establish a definition of displacement in the marine energy context, explore which functional groups of marine animals may be affected and in what way, and identify pathways for investigating displacement through modeling and monitoring. In the marine energy context, we defined displacement as the outcome of one of three mechanisms (i.e., attraction, avoidance, and exclusion) triggered by an animal's response to one or more stressors acting as a disturbance, with various consequences at the individual through population levels. The knowledge gaps highlighted in this study will help the regulatory and scientific communities prepare for mitigating, observing, measuring, and characterizing displacement of various animals around marine energy arrays in order to prevent irreversible consequences.Peer reviewe

Ancient humans influenced the current spatial genetic structure of common walnut populations in Asia

Common walnut (Juglans regia L) is an economically important species cultivated worldwide for its wood and nuts. It is generally accepted that J. regia survived and grew spontaneously in almost completely isolated stands in its Asian native range after the Last Glacial Maximum. Despite its natural geographic isolation, J. regia evolved over many centuries under the influence of human management and exploitation. We evaluated the hypothesis that the current distribution of natural genetic resources of common walnut in Asia is, at least in part, the product of ancient anthropogenic dispersal, human cultural interactions, and afforestation. Genetic analysis combined with ethno-linguistic and historical data indicated that ancient trade routes such as the Persian Royal Road and Silk Road enabled long-distance dispersal of J. regia from Iran and Trans-Caucasus to Central Asia, and from Western to Eastern China. Ancient commerce also disrupted the local spatial genetic structure of autochthonous walnut populations between Tashkent and Samarkand (Central- Eastern Uzbekistan), where the northern and central routes of the Northern Silk Road converged. A significant association between ancient language phyla and the genetic structure of walnut populations is reported even after adjustment for geographic distances that could have affected both walnut gene flow and human commerce over the centuries. Beyond the economic importance of common walnut, our study delineates an alternative approach for understanding how the genetic resources of long-lived perennial tree species may be affected by the interaction of geography and human history

Human Impacts on Forest Biodiversity in Protected Walnut-Fruit Forests in Kyrgyzstan

We used a spatially explicit model of forest dynamics, supported by empirical field data and socioeconomic data, to examine the impacts of human disturbances on a protected forest landscape in Kyrgyzstan. Local use of 27 fruit and nut species was recorded and modeled. Results indicated that in the presence of fuelwood cutting with or without grazing, species of high socioeconomic impor- tance such as Juglans regia, Malus spp., and Armeniaca vulgaris were largely eliminated from the landscape after 50–150 yr. In the absence of disturbance or in the presence of grazing only, decline of these species occurred at a much lower rate, owing to competi- tive interactions between tree species. This suggests that the current intensity of fuelwood harvesting is not sustainable. Conversely, cur- rent grazing intensities were found to have relatively little impact on forest structure and composition, and could potentially play a positive role in supporting regeneration of tree species. These results indicate that both positive and negative impacts on biodiversity can arise from human populations living within a protected area. Potentially, these could be reconciled through the development of participatory approaches to conservation management within this reserve, to ensure the maintenance of its high conservation value while meeting human needs

Comparison of the bifurcation scenarios predicted by the single-mode and multimode semiconductor laser rate equations

We present a detailed comparison of the bifurcation scenarios predicted by single-mode and multimode semiconductor laser rate equation models under large amplitude injection current modulation. The influence of the gain model on the predicted dynamics is investigated. Calculations of the dependence of the time averaged longitudinal mode intensities on modulation frequency are compared with experiments performed on an AlxGa1-xAs Fabry-Pérot semiconductor laser.K. A. Corbett and M. W. Hamilto