A review of the effects of contamination and temperature in Solea solea larvae. Modeling perspectives in the context of climate change

WOS:000704000700002International audienceThe flatfish species Solea solea has been the subject of research for supporting their management in fisheries, restocking natural populations, domestication in aquaculture, and ecotoxicology research. Soles undergo a metamorphosis with drastic morphological and physiological changes and settlement, processes that make them potentially more vulnerable to pollutants than other fish. Up to date, efforts made to develop its aquaculture production in Europe have been limited. In the context of climate change (CC), this review aims i) to gather research conducted in S. solea larvae that summarizes the effects of increased temperature and contaminant exposures during larval development; and ii) to provide a summarized and synergistic view about its larval development. The review consists of 4 sections. Section 1 justifies the selection of this species from ecological and economic perspectives. Section 2 focuses on larvae ontogenesis, metamorphosis, rearing challenges, and further aquaculture production. Section 3 reviews studies dealing with the effects of temperature change (due to CC) and pollutants on larval development. Finally, section 4 provides a "how to go forward on ecotoxicological research" guideline, in which we highlight the methods that we found promising as tools to study the combined effects of CC and pollution. The section includes a multidisciplinary framework that proposes how existing data coming from different scientific domains can be synthesized to be useful for risk assessors and ecotoxicologists. To benefit from such a framework, it is necessary to reach consensus and nurture team effort from players that operate in different research disciplines

Bioaccumulation of per- and polyfluoroalkyl substance in fish from an urban river: Occurrence, patterns and investigation of potential ecological drivers

International audiencePer- and polyfluoroalkyl substances (PFAS) are ubiquitous in aquatic environments and a recent shift toward emerging PFAS is calling for new data on their occurrence and fate. In particular, understanding the determinants of their bioaccumulation is fundamental for risk assessment purposes. However, very few studies have addressed the combined influence of potential ecological drivers of PFAS bioaccumulation in fish such as age, sex or trophic ecology. Thus, this work aimed to fill these knowledge gaps by performing a field study in the Seine River basin (France). Composite sediment and fish (European chub, Squalius Cephalus) samples were collected from four sites along a longitudinal transect to investigate the occurrence of 36 PFAS. Sediment molecular patterns were dominated by fluorotelomer sulfonamidoalkyl betaines (i.e. 6:2 and 8:2 FTAB, 46% of ∑PFAS on average), highlighting the non-negligible contribution of PFAS of emerging concern. C9–C14 perfluoroalkyl carboxylic acids, perfluorooctane sulfonic acid (PFOS), perfluorooctane sulfonamide (FOSA) and 10:2 fluorotelomer sulfonate (10:2 FTSA) were detected in all fish samples. Conversely, 8:2 FTAB was detected in a few fish from the furthest downstream station only, suggesting the low bioaccessibility or the biotransformation of FTABs. ∑PFAS in fish was in the range 0.22–3.8 ng g−1 wet weight (ww) and 11–140 ng g−1 ww for muscle and liver, respectively. Fish collected upstream of Paris were significantly less contaminated than those collected downstream, pointing to urban and industrial inputs. The influence of trophic ecology and biometry on the interindividual variability of PFAS burden in fish was examined through analyses of covariance (ANCOVAs), with sampling site considered as a categorical variable. While the latter was highly significant, diet was also influential; carbon sources and trophic level (i.e. estimated using C and N stable isotope ratios, respectively) equally explained the variability of PFAS levels in fish

Impact of biotic and abiotic factors on the expression of fungal effector-encoding genes in axenic growth conditions

In phytopathogenic fungi, the expression of hundreds of small secreted protein (SSP)-encoding genes is induced upon primary infection of plants while no or a low level of expression is observed during vegetative growth. In some species such as Leptosphaeria maculans, this coordinated in-planta upregulation of SSP-encoding genes expression relies on an epigenetic control but the signals triggering gene expression in-planta are unknown. In the present study, biotic and abiotic factors that may relieve suppression of SSP-encoding gene expression during axenic growth of L. maculans were investigated. Some abiotic factors (temperature, pH) could have a limited effect on SSP gene expression. In contrast, two types of cellular stresses induced by antibiotics (cycloheximide, phleomycin) activated strongly the transcription of SSP genes. A transcriptomic analysis to cycloheximide exposure revealed that biological processes such as ribosome biosynthesis and rRNA processing were induced whereas important metabolic pathways such as glycogen and nitrogen metabolism, glycolysis and tricarboxylic acid cycle activity were down regulated. A quantitatively different expression of SSP-encoding genes compared to plant infection was also detected. Interestingly, the same physico-chemical parameters as those identified here for L. maculans effectors were identified to regulate positively or negatively the expression of bacterial effectors. This suggests that apoplastic phytopathogens may react to similar physiological parameters for regulation of their effector genes. (C) 2017 Elsevier Inc. All rights reserved

Different waves of effector genes with contrasted genomic location are expressed by Leptosphaeria maculans during cotyledon and stem colonization of oilseed rape

Leptosphaeria maculans, the causal agent of stem canker disease, colonizes oilseed rape (Brassica napus) in two stages: a short and early colonization stage corresponding to cotyledon or leaf colonization, and a late colonization stage during which the fungus colonizes systemically and symptomlessly the plant during several months before stem canker appears. To date, the determinants of the late colonization stage are poorly understood; L. maculans may either successfully escape plant defences, leading to stem canker development, or the plant may develop an adult-stage' resistance reducing canker incidence. To obtain an insight into these determinants, we performed an RNA-sequencing (RNA-seq) pilot project comparing fungal gene expression in infected cotyledons and in symptomless or necrotic stems. Despite the low fraction of fungal material in infected stems, sufficient fungal transcripts were detected and a large number of fungal genes were expressed, thus validating the feasibility of the approach. Our analysis showed that all avirulence genes previously identified are under-expressed during stem colonization compared with cotyledon colonization. A validation RNA-seq experiment was then performed to investigate the expression of candidate effector genes during systemic colonization. Three hundred and seven late' effector candidates, under-expressed in the early colonization stage and over-expressed in the infected stems, were identified. Finally, our analysis revealed a link between the regulation of expression of effectors and their genomic location: the late' effector candidates, putatively involved in systemic colonization, are located in gene-rich genomic regions, whereas the early' effector genes, over-expressed in the early colonization stage, are located in gene-poor regions of the genome

Per- and poly-fluoroalkyl compounds in freshwater fish from the Rhone River: Influence of fish size, diet, prey contamination and biotransformation

Pools of aquatic plants and benthic invertebrates were collected along with 47 individuals from three cyprinid fish species (Barbus barbus, Gobio gobio, Rutilus rutilus) at a site in the Rhone River (France). Carbon and nitrogen isotopic ratios (delta C-13 and delta N-15) and a wide range of per-and poly-fluorinated chemicals (PFASs) were analysed in all samples. The sum of PFAS concentrations (Sigma PFAS) increased from aquatic plants to fish dorsal muscles; molecular profiles were dominated by C9-C13 perfluorocarboxylic acids (PFCAs), while perfluorooctane sulfonate (PFOS) and perfluorooctane sulfonamide (FOSA) were detected in all samples at lower concentrations. SPFAS and especially Sigma PFCAs were higher in barbels (B. barbus) than in other species, while roaches (R. rutilus) were less contaminated by PFOS than barbels and gudgeons (G. gobio). Gudgeons accumulated significantly higher FOSA concentrations. Young (small) barbels displayed significantly higher PFOS, perfluorononanoic acid (PFNA) and perfluorodecanoic acid (PFDA) concentrations than did large specimens; conversely, perfluorotetradecanoic acid (PFTeDA) concentrations were significantly higher in large barbels. Multiple linear regressions were performed on the whole set of fish samples with size, mass and isotopic ratios as explicative variables, and several single compounds as explained variables. Regardless of the compound, the regressions did not explain much of the contamination variability. However, adding species as a qualitative variable, i.e. performing analyses of covariance (ANCOVAs) improved the fit greatly, while adding sex did not. Diet (i.e. delta C-13 and delta N-15) was the main factor explaining interspecific differences. Biotransformation was assessed by comparing concentration ratios of PFOS or FOSA to their precursors in the food-web compartments. These ratios increased from invertebrates to fish, and differed among fish species, suggesting that biotransformation occurred but was species-specific. Biomagnification factor calculations showed that C11-C13 PFCAs, PFOS and FOSA were apparently biomagnified in barbels and gudgeons. (C) 2017 Elsevier B.V. All rights reserved

Leptosphaeria maculans effectors involved in the oilseed rape systemic colonization.

The stem canker disease, caused by Leptosphaeria maculans, is one of the most devastating diseases of oilseed rape (canola). It colonizes the plant in two stages: a short and early colonisation stage corresponding to cotyledon or leaf colonisation, and a late colonisation stage during which the fungus colonises systemically and symptomlessly the plant during several months before stem canker appears. To date, determinants of the late colonisation stage remain poorly understood. By a transcriptomic approach, we previously identified two waves of effector candidate expression during the early and late colonisation stages (Gervais et al, 2016). The late effector candidates are located in gene-rich genomic regions, whereas the early effector genes are located in gene-poor regions of the genome. Among the late effector candidates identified, we selected 6 genes for further characterization. We created mutants silenced for these effector candidates. For one of these genes, its expression level correlated negatively with the size of the necrosis observed in the stem. The identification of new effector genes would contribute to the identification of new resistance genes specific to these effectors. To easily identify matching resistance genes in oilseed rape, we created transgenic isolates expressing these 6 late effectors at the early steps of infection to provide medium-throughput strategies to screen more efficiently different cultivars. Preliminary results indicate that some cultivars with adult resistance were more resistant to these transgenic isolates in cotyledon assays. With this approach, we also identified a cultivar carrying a specific resistance to one these 6 effector candidates. Reference Gervais, J., Plissonneau, C., Linglin, J., Meyer, M., Labadie, K., Cruaud, C., Fudal, I., Rouxel, T. and Balesdent, M.H. (2016) Different waves of effector genes with contrasted genomic location are expressed by Leptosphaeria maculans during cotyledon and stem colonization of oilseed rape. Mol. Plant Pathol

Wandering albatrosses document latitudinal variations in the transfer of persistent organic pollutants and mercury to Southern Ocean predators

International audienceTop marine predators are effective tools to monitor bioaccumulative contaminants in remote oceanic environments. Here, we used the wide-ranging wandering albatross Diomedea exulans to investigate potential geographical variations of contaminant transfer to predators in the Southern Ocean. Blood concentrations of 19 persistent organic pollutants and 14 trace elements were measured in a large number of individuals (N = 180) of known age, sex and breeding status from the subantarctic Crozet Islands. Wandering albatrosses were exposed to a wide range of contaminants, with notably high blood mercury concentrations. Contaminant burden was markedly influenced by latitudinal foraging habitats (inferred from blood δ13C values), with individuals feeding in warmer subtropical waters having lower concentrations of pesticides, but higher concentrations of mercury, than those feeding in colder subantarctic waters. Sexual differences in contaminant burden seemed to be driven by gender specialization in feeding habitats, rather than physiological characteristics, with females foraging further north than males. Other individual traits, such as adult age and reproductive status, had little effect on blood contaminant concentrations. Our study provides further evidence of the critical role of global distillation on organic contaminant exposure to Southern Ocean avian predators. In addition, we document an unexpected high transfer of mercury to predators in subtropical waters, which merits further investigation

Le risque écotoxicologique dans le bassin de la Seine. Comprendre et diagnostiquer l'impact de la contamination sur les organismes

Le PIREN-Seine s’intéresse à la présence dans le bassin versant de la Seine de contaminants d’origines agricole, industrielle et domestique depuis une vingtaine d’années. Ces polluants, qui se retrouvent parfois à des concentrations très faibles dans l’eau, peuvent avoir des impacts sur l’homme et l’environnement qui restent peu connus. La présence de ces substances toxiques suscite un intérêt majeur auprès des gestionnaires de la ressource comme des consommateurs. Les perturbations endocriniennes, les effets cancérigènes, la présence de résidus de médicaments sont autant de sujets d’inquiétude largement médiatisés et débattus. Pour garantir la protection de la santé humaine et du milieu aquatique, la réglementation a défini des normes de qualité environnementale, les NQE. En application de la directive cadre sur l’eau, des seuils de concentrations moyennes et maximales ont été édictées par la directive fille 2008/105/EC du 16 décembre 2008 pour les 33 substances prioritaires initialement listées. Des NQE provisoires sont aussi disponibles pour plus de 100 autres substances. Les NQE reposent sur l’évaluation approfondie des effets toxiques en laboratoire de ces molécules. L’écotoxicologie traite des effets toxiques des substances chimiques sur les organismes vivants et l’environnement. Ce thème de recherche est étudié aujourd’hui par les équipes d’écotoxicologie, d’écologie et de chimie du PIREN-Seine, notamment via des études sur trois sites pilotes : le bassin de l’Orge, le bassin de la Vesle et l’axe Seine. Comment mesurer l’impact de ces substances ? Les analyses chimiques étant insuffisantes pour évaluer le risque des substances toxiques dans le milieu, les scientifiques étudient d’autres méthodes. Les bio-essais réalisés en laboratoire en font partie. Regroupant un ensemble très vaste d’essais réalisés sur des échantillons de l’environnement, ils permettent de caractériser le «potentiel toxique», comme la présence des perturbateurs endocriniens et la génotoxicité des masses d’eau. In situ, la bioaccumulation, mesurée sur des organismes « sentinelles » contribue à l’évaluation de l’exposition aux micropolluants. Enfin, les biomarqueurs constituent une solution prometteuse pour diagnostiquer l’impact sur l’environnement des contaminants chimiques

Development of a Sequence-Based Reference Physical Map of Pea (<em>Pisum sativum</em> L.)

International audienceWhole genome profiling (WGP) is a sequence-based physical mapping technology and uses sequence tags generated by next generation sequencing for construction of bacterial artificial chromosome (BAC) contigs of complex genomes. The physical map provides a framework for assembly of genome sequence and information for localization of genes that are difficult to find through positional cloning. To address the challenges of accurate assembly of the pea genome (similar to 4.2 GB of which approximately 85% is repetitive sequences), we have adopted the WGP technology for assembly of a pea BAC library. Multi-dimensional pooling of 295,680 BAC clones and sequencing the ends of restriction fragments of pooled DNA generated 1,814 million high quality reads, of which 825 million were deconvolutable to 1.11 million unique WGP sequence tags. These WGP tags were used to assemble 220,013 BACs into contigs. Assembly of the BAC clones using the modified Fingerprinted Contigs (FPC) program has resulted in 13,040 contigs, consisting of 213,719 BACs, and 6,294 singleton BACs. The average contig size is 0.33 Mbp and the N-50 contig size is 0.62 Mbp. WGP (TM) technology has proved to provide a robust physical map of the pea genome, which would have been difficult to assemble using traditional restriction digestion based methods. This sequence-based physical map will be useful to assemble the genome sequence of pea. Additionally, the 1.1 million WGP tags will support efficient assignment of sequence scaffolds to the BAC clones, and thus an efficient sequencing of BAC pools with targeted genome regions of interest