Breeding bird, invertebrate, and wetland plant seed responses to USDA Farmable Wetland Program restorations in north-central Iowa and eastern South Dakota

Conversion of native prairie and wetland landscapes in the Prairie Pothole Region to commodity rowcrop agricultural production has left only small fragments of native habitats intact and has substantially altered regional hydrology. In 2001, the Farmable Wetland Program (FWP) was introduced as a pilot program under the continuous Conservation Reserve Program to afford landowners the opportunity to remove small wet areas (former temporary wetlands) from production, while concomitantly providing opportunities for resource managers to restore temporary wetland habitats. I undertook this study during 2003-2004 to evaluate the effects of site- and landscape-level factors on the use of 2-3 year old FWP sites by wetland- and grassland-associated birds in north-central Iowa. I also examined macroinvertebrate and plant seed occurrences in Iowa FWP sites in relation to similar factors. In eastern South Dakota, I examined the use of FWP restorations by breeding waterfowl and ring-necked pheasants. In both regions, size of the restored site was related to bird occurrences. FWP sites received more bird use than cultivated sites, but I found no differences in bird use between extensive and minimal hydrologic treatments. Landscape factors were of limited usefulness in understanding bird use of FWP sites. I attributed poor performance of landscape models to the lack of variation in the intensely agricultural landscapes surrounding FWP sites in my study. I found high avian use but low nesting success on FWP sites. Invertebrate taxa richness, abundance, and biomass differed between years and changed seasonally, but did not differ between hydrologic treatments as predicted. Invertebrate communities of FWP wetlands were characteristically simple, but abundances were low and species typically found in temporary wetlands were conspicuously absent. I attributed species absences and low abundances to the extended period that basins had been under cultivation, their isolation, lack of detritus, youthfulness of FWP sites, altered hydroperiod, and perhaps impacts from agricultural practices on adjacent lands (e.g., increased sedimentation and agrochemicals). Lack of adequate residual cover in watersheds to capture snow, vast drainage systems, and continued cultivation of adjacent lands will continue to make it difficult to replicate natural flooding regimes and properly restore temporary wetland ecosystems

Fire Induced Reproductive Mechanisms of a Symphoricarpos (Caprifoliaceae) Shrub after Dormant Season Burning

Background: Symphoricarpos, a genus of the Caprifoliaceae family, consists of about 15 species of clonal deciduous shrubs in North America and 1 species endemic to China. In North American tallgrass prairie, Symphoricarpos orbiculatus (buckbrush) is the dominant shrub often forming large colonies via sexual and asexual reproductive mechanisms. Symphoricarpos shrubs, in particular S. orbiculatus, use a unique sexual reproductive mechanism known as layering where vertical stems droop and the tips root upon contact with the soil. Because of conflicting societal values of S. orbiculatus for conservation and agriculture and the current attempt to restore historical fire regimes, there is a need for basic research on the biological response of S. orbiculatus to anthropogenic burning regimes. Results: From 2007 through 2013 we applied prescribed fires in the late dormant season on grazed pastures in the Grand River Grasslands of Iowa. From 2011 to 2013, we measured how S. orbiculatus basal resprouting and layering stems were affected by patchy fires on grazed pastures, complete pasture fires on grazed pastures or fire exclusion without grazing for more than three years. We measured ramet height, ramet canopy diameter, stems per ramet, ramets per 100 m2, and probability of new layering stems 120 days after fire. Height in burned plots was lower than unburned plots but S. orbiculatus reached ~ 84% of pre-burn height 120 days after fire. Stems per ramet were 2x greater in the most recently burned plots due to basal re-sprouting. Canopy diameter and density of ramets was not affected by time since fire, but burned pastures had marginally lower densities than plots excluded from fire (P = 0.07). Fire triggered new layering stems and no new layering stems were found in plots excluded from fire. Conclusions: The mechanisms of both basal sprouting and aerial layering after fire suggest S. orbiculatus is tolerant to dormant season fires. Furthermore, dormant season fires, regardless if they were patchy fires or complete pasture fires, did not result in mortality of S. orbiculatus. Dormant season fires can reduce S. orbiculatus structural dominance and maintain lower ramet densities but also trigger basal resprouting and layering

Increasing carbon sequestration of working prairie by reducing invasive species in a fire and grazing system

The investigators looked at one method for curbing invasive species that limit carbon sequestration potential for tallgrass prairie stands. They also learned that grasslands dominated by either warm-season, cool-season, or mixed stands are likely equal in their carbon sequestration potential

A common and unstable copy number variant is associated with differences in Glo1 expression and anxiety-like behavior

Glyoxalase 1 (Glo1) has been implicated in anxiety-like behavior in mice and in multiple psychiatric diseases in humans. We used mouse Affymetrix exon arrays to detect copy number variants (CNV) among inbred mouse strains and thereby identified a approximately 475 kb tandem duplication on chromosome 17 that includes Glo1 (30,174,390-30,651,226 Mb; mouse genome build 36). We developed a PCR-based strategy and used it to detect this duplication in 23 of 71 inbred strains tested, and in various outbred and wild-caught mice. Presence of the duplication is associated with a cis-acting expression QTL for Glo1 (LOD>30) in BXD recombinant inbred strains. However, evidence for an eQTL for Glo1 was not obtained when we analyzed single SNPs or 3-SNP haplotypes in a panel of 27 inbred strains. We conclude that association analysis in the inbred strain panel failed to detect an eQTL because the duplication was present on multiple highly divergent haplotypes. Furthermore, we suggest that non-allelic homologous recombination has led to multiple reversions to the non-duplicated state among inbred strains. We show associations between multiple duplication-containing haplotypes, Glo1 expression and anxiety-like behavior in both inbred strain panels and outbred CD-1 mice. Our findings provide a molecular basis for differential expression of Glo1 and further implicate Glo1 in anxiety-like behavior. More broadly, these results identify problems with commonly employed tests for association in inbred strains when CNVs are present. Finally, these data provide an example of biologically significant phenotypic variability in model organisms that can be attributed to CNVs.These studies were funded by MH070933, MH79103 and MH020065

Landowners' perceptions of risk in grassland management: Woody plant encroachment and prescribed fire

Ecologists recognize that fire and herbivory are essential to maintaining habitat quality in grassland ecosystems. Prescribed fire and grazing are typically used on public reserves to increase biodiversity, improve grassland productivity, and control encroachment of woody plants. However, these tools, particularly prescribed fire, have not been widely adopted by private landowners. Fire suppression and prescribed fire are strategies that present competing risks to owners who make management decisions. We explore landowner perceptions of risk associated with (1) eastern redcedar (Juniperus virginiana) encroachment, and (2) the use of prescribed fire to control woody species in the Grand River Grasslands of Iowa and Missouri, USA. We found that although mapping data of eastern redcedar in this region showed substantial encroachment over the past three decades, concept mapping of landowner beliefs and in-person interviews of local community leaders revealed that perceived risks associated with prescribed fire often outweighed those associated with loss of forage and grassland habitats.Peer reviewedNatural Resource Ecology and Managemen

A review of the toxicology of oil in vertebrates : what we have learned following the Deepwater Horizon oil spill

This research was made possible by a grant from The Gulf of Mexico Research Initiative. This publication is UMCES contribution No. 6045 and Ref. No. [UMCES] CBL 2022-008. This is National Marine Mammal Foundation Contribution #314 to peer-reviewed scientific literature.In the wake of the Deepwater Horizon (DWH) oil spill, a number of government agencies, academic institutions, consultants, and nonprofit organizations conducted lab- and field-based research to understand the toxic effects of the oil. Lab testing was performed with a variety of fish, birds, turtles, and vertebrate cell lines (as well as invertebrates); field biologists conducted observations on fish, birds, turtles, and marine mammals; and epidemiologists carried out observational studies in humans. Eight years after the spill, scientists and resource managers held a workshop to summarize the similarities and differences in the effects of DWH oil on vertebrate taxa and to identify remaining gaps in our understanding of oil toxicity in wildlife and humans, building upon the cross-taxonomic synthesis initiated during the Natural Resource Damage Assessment. Across the studies, consistency was found in the types of toxic response observed in the different organisms. Impairment of stress responses and adrenal gland function, cardiotoxicity, immune system dysfunction, disruption of blood cells and their function, effects on locomotion, and oxidative damage were observed across taxa. This consistency suggests conservation in the mechanisms of action and disease pathogenesis. From a toxicological perspective, a logical progression of impacts was noted: from molecular and cellular effects that manifest as organ dysfunction, to systemic effects that compromise fitness, growth, reproductive potential, and survival. From a clinical perspective, adverse health effects from DWH oil spill exposure formed a suite of signs/symptomatic responses that at the highest doses/concentrations resulted in multi-organ system failure.Publisher PDFPeer reviewe

Measurement of the Dipion Mass Spectrum in X(3872) -> J/Psi Pi+ Pi- Decays

We measure the dipion mass spectrum in X(3872)--> J/Psi Pi+ Pi- decays using 360 pb-1 of pbar-p collisions at 1.96 TeV collected with the CDF II detector. The spectrum is fit with predictions for odd C-parity (3S1, 1P1, and 3DJ) charmonia decaying to J/Psi Pi+ Pi-, as well as even C-parity states in which the pions are from Rho0 decay. The latter case also encompasses exotic interpretations, such as a D0-D*0Bar molecule. Only the 3S1 and J/Psi Rho hypotheses are compatible with our data. Since 3S1 is untenable on other grounds, decay via J/Psi Rho is favored, which implies C=+1 for the X(3872). Models for different J/Psi-Rho angular momenta L are considered. Flexibility in the models, especially the introduction of Rho-Omega interference, enable good descriptions of our data for both L=0 and 1.Comment: 7 pages, 4 figures -- Submitted to Phys. Rev. Let

Measurement of B(t->Wb)/B(t->Wq) at the Collider Detector at Fermilab

We present a measurement of the ratio of top-quark branching fractions R= B(t -> Wb)/B(t -> Wq), where q can be a b, s or a d quark, using lepton-plus-jets and dilepton data sets with integrated luminosity of ~162 pb^{-1} collected with the Collider Detector at Fermilab during Run II of the Tevatron. The measurement is derived from the relative numbers of t-tbar events with different multiplicity of identified secondary vertices. We set a lower limit of R > 0.61 at 95% confidence level.Comment: 7 pages, 2 figures, published in Physical Review Letters; changes made to be consistent with published versio

Measurement of the Lifetime Difference Between B_s Mass Eigenstates

We present measurements of the lifetimes and polarization amplitudes for B_s --> J/psi phi and B_d --> J/psi K*0 decays. Lifetimes of the heavy (H) and light (L) mass eigenstates in the B_s system are separately measured for the first time by determining the relative contributions of amplitudes with definite CP as a function of the decay time. Using 203 +/- 15 B_s decays, we obtain tau_L = (1.05 +{0.16}/-{0.13} +/- 0.02) ps and tau_H = (2.07 +{0.58}/-{0.46} +/- 0.03) ps. Expressed in terms of the difference DeltaGamma_s and average Gamma_s, of the decay rates of the two eigenstates, the results are DeltaGamma_s/Gamma_s = (65 +{25}/-{33} +/- 1)%, and DeltaGamma_s = (0.47 +{0.19}/-{0.24} +/- 0.01) inverse ps.Comment: 8 pages, 3 figures, 2 tables; as published in Physical Review Letters on 16 March 2005; revisions are for length and typesetting only, no changes in results or conclusion

An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics

For a decade, The Cancer Genome Atlas (TCGA) program collected clinicopathologic annotation data along with multi-platform molecular profiles of more than 11,000 human tumors across 33 different cancer types. TCGA clinical data contain key features representing the democratized nature of the data collection process. To ensure proper use of this large clinical dataset associated with genomic features, we developed a standardized dataset named the TCGA Pan-Cancer Clinical Data Resource (TCGA-CDR), which includes four major clinical outcome endpoints. In addition to detailing major challenges and statistical limitations encountered during the effort of integrating the acquired clinical data, we present a summary that includes endpoint usage recommendations for each cancer type. These TCGA-CDR findings appear to be consistent with cancer genomics studies independent of the TCGA effort and provide opportunities for investigating cancer biology using clinical correlates at an unprecedented scale. Analysis of clinicopathologic annotations for over 11,000 cancer patients in the TCGA program leads to the generation of TCGA Clinical Data Resource, which provides recommendations of clinical outcome endpoint usage for 33 cancer types