Modelling trophic structure and energy flows in the coastal ecosystem of the Persian Gulf using Ecopath with Ecosim

In the present study, the trophic structure for some species of the coastal ecosystem of south of the Qeshm Island was developed using the mass balance modeling software Ecopath (Version 6.5.1). In this model, 33 functional groups including fish, benthos, phytoplankton, zooplankton, seaweed and detritus were simulated. In total, 3757 samples of stomach contents were analyzed based on the weight and numerical methods. Bony fish and crustacean were found to be the main prey in most of the stomach contents. The mean trophic level in the study area was calculated to be 3.08. The lowest trophic level was belonged to Liza klunzingeri, (2.50) and the highest belong to Trichiurus lepturus (4.45). The range of total mortality varied from 1.11 per year for T. Lepturus to 3.55 per year for Sillago sihama. The lowest and highest Consumption/Biomass value was belonged to Trichiurus lepturus (2.94) and Rastrelliger kanagurta (11.60) respectively. In this study, the role of ecological groups in the food web was determined using Keystone Index. The results showed that benthos and subsequently phytoplankton and zooplankton are among the dominant ecological groups in the southern ecosystem of Qeshm Island. The Connectance Index and the System Omnivory Index of this ecosystem were estimated to be 0.14 and 0.15 respectively. Population dynamics studies especially the exploitation rate (E) showed that Pomadasys kaakan, Rastrelliger kanagurta and Sillago sihama are under fishing pressure. Overall, the indices of ecological relationships with the population dynamics parameters showed that the exploitation of the fisheries resources in the study area is not in a good condition. The results of Ecosim model using time series of mean biomass from 2004-2016, showed a decrease in the biomass of Nemipterus japonicus, Otolithes ruber and Rastrelliger kanagurta. In general, the results of this study showed that the current fish harvest on the population of carnivorous species is very high which in long term could decrease the number of fish recruitment and consequently the capacity and sustainability of Qeshm Island fishing. Moreover, the high exploitation of fishing resources in this area could have negative effect on top-down food web and gradually reduce the top predator species, and eventually resulted in changing the trophic level of the species and reduction of the top of the food web species, which could be resulted in damaging of the ecological balance and endangering long-term sustainable utilization

Growth, mortality and spawning season of the spangled emperor (Lethrinus nebulosus Forsskal, 1775) in coastal waters of Hormozgan Province in the Persian Gulf and Oman Sea

The population parameters and spawning season of the Spangled emperor (Lethrinus nebulosus) were studied in coastal waters of Hormozgan province. The monthly calculated mean values of gonadosomatic index (GSI) of females were indicate to increase from February, reach the highest in March and decline in June. The spawning season peak of L. nebulosus occurred in March. The Von Bertalanffy growth parameters, L∞, K and t0 were estimated as, 67.2cm, 0.16.year^-1 and -1.161 year, respectively. The relationship between weight and length (Fork Length) can be expressed as W=0.051 L^2.722, which indicates that Spangled Emperor has negative allometric growth. Using length converted catch curve, total mortality (Z) was estimated as 1.13 year^-1 and natural mortality was estimated using Pauly's equation, as 0.57 per year. Finally, the fishing mortality (F) was 0.56, which gives an exploitation rate (E) of 0.50

Growth parameters and mortality rates of Liza klunzingeri in the Iranian waters of the Persian Gulf and Oman Sea, using Length Frequency Data

The aim of the present study was to investigate the population dynamics of Liza klunzingeri, in Hormouzgan province waters located in northern coasts of the Persian Gulf and Oman Sea. This study was carried out from October 2007 to September 2008. Samples were collected from commercial stake traps. The relationship between weight and fork length was found to be W= 0.0214 F.L^2.8233 suggesting that Liza klunzingeri shows isometric growth. Length-based stock assessment using the FiSAT software package showed an asymptotic length (L∞) of 20.3cm FL and growth coefficient of 0.6.yr^-1. These results gave a growth performance index (ø) of 2.39. The total mortality coefficient was estimated to be 2.31, a natural mortality of 1.09 and fishing mortality of 1.22. The estimated total mortality which, in relative terms, is considered average (2.31.yr^-1), coupled with the currently observed exploitation rate of 0.52 for L. klunzingeri, estimated from the mortality rates, suggested that the species is moderately exploited

Fuel Consumption Monitoring for Travel Demand Modeling

The purpose of this research is to investigate the impact of fuel consumption patterns on travel demand estimation. This paper evaluates and calibrates travel demand estimation by CUBE software and its relation to fuel consumption, with the use of data provided by Sharif University, for the city of Shiraz, Iran in 1999. This research proves the presence strong correlations between vehicle fuel use and the trip's generation process by exogenous and endogenous variables. The effect of energy consumption patterns on generation and distribution stage of travel demand modeling based on inverse ability has been considered in the present model

Structure and folding of four putative kink turns identified in structured RNA species in a test of structural prediction rules

k-Turns are widespread key architectural elements that occur in many classes of RNA molecules. We have shown previously that their folding properties (whether or not they fold into their tightly kinked structure on addition of metal ions) and conformation depend on their local sequence, and we have elucidated a series of rules for prediction of these properties from sequence. In this work, we have expanded the rules for prediction of folding properties, and then applied the full set to predict the folding and conformation of four probable k-turns we have identified amongst 224 structured RNA species found in bacterial intergenenic regions by the Breaker lab (1). We have analyzed the ion-dependence of folding of the four k-turns using fluorescence resonance energy transfer, and determined the conformation of two of them using X-ray crystallography. We find that the experimental data fully conform to both the predicted folding and conformational properties. We conclude that our folding rules are robust, and can be applied to new k-turns of unknown characteristics with confidence

The correlation of RNase A enzymatic activity with the changes in the distance between Nepsilon2-His12 and N delta1-His119 upon addition of stabilizing and destabilizing salts.

The effect of stabilizing and destabilizing salts on the catalytic behavior of ribonuclease A (RNase A) was investigated at pH 7.5 and 25 degrees C, using spectrophotometric, viscometric and molecular dynamic methods. The changes in the distance between N(epsilon2) of His(12) and N(delta1) of His(119) at the catalytic center of RNase A upon the addition of sodium sulfate, sodium hydrogen sulfate and sodium thiocyanate were evaluated by molecular dynamic methods. The compactness and expansion in terms of Stokes radius of RNase A upon the addition of sulfate ions as kosmotropic salts, and thiocyanate ion as a chaotropic salt, were estimated by viscometric measurements. Enzyme activity was measured using cytidine 2', 3'-cyclic monophosphate as a substrate. The results from the measurements of distances between N(epsilon2) of His(12) and N(delta1) of His(119) and Stokes radius suggest (i) that the presence of sulfate ions decreases the distance between the catalytic His residues and increases the globular compactness, and (ii) that there is an expansion of the enzyme surface as well as elongation of the catalytic center in the presence of thiocyanate ion. These findings are in agreement with activity measurements

Predictors of functional outcome vary by the hemisphere of involvement in major ischemic stroke treated with intra-arterial therapy: a retrospective cohort study

<p>Abstract</p> <p>Background</p> <p>Conflicting data exists regarding the effect of hemispheric lateralization on acute ischemic stroke outcome. Some of this variability may be related to heterogeneous study populations, particularly with respect to the level of arterial occlusion. Furthermore, little is known about the relationship between stroke lateralization and predictors of outcome. The purpose of this study was to characterize the impact of stroke lateralization on both functional outcome and its predictors in a well-defined population of anterior circulation proximal artery occlusions treated with IAT.</p> <p>Methods</p> <p>Thirty-five consecutive left- and 35 consecutive right-sided stroke patients with intracranial ICA and/or MCA occlusions who underwent IAT were retrospectively analyzed. Ischemic change on pre-treatment imaging was quantified. Reperfusion success was graded using the Mori scale. Good outcome at three months was defined as an mRS ≤ 2. Left- and right-sided strokes were compared for outcome and its predictors.</p> <p>Result</p> <p>Of 70 patients with median NIHSS score of 18 (IQR, 14-21), 19 (27.1%) had a good outcome. There were 21 terminal ICA and 49 MCA occlusions. There was no difference in the rate of good outcomes between left- (n = 9) and right-sided (n = 10) strokes (p = 0.99). There were no significant differences in occlusion level, age, ischemic change on initial imaging and degree of reperfusion between left- and right-sided strokes. Left-sided strokes had higher baseline NIHSS scores (p = 0.02) and lower admission SBP (p = 0.009). Independent predictors of outcome for left-sided strokes were NIHSS (p = 0.0002) and reperfusion (p = 0.006), and for right-sided strokes were age (p = 0.002) and reperfusion (p = 0.003). In univariate analysis, pre-treatment ischemic change on NCCT was associated with outcome only for left-sided strokes (p = 0.05).</p> <p>Conclusions</p> <p>In anterior circulation proximal artery occlusions treated with IAT, hemispheric lateralization influences the clinical and imaging predictors of outcome. Most notably, NIHSS predicts outcome only for the left-sided strokes in this population. This finding has important implications for outcome prediction in the acute setting and indicates a need for stroke severity scales more sensitive to right hemispheric deficits.</p