Single and Double Photoionization and Photodissociation of Toluene by Soft X-rays in Circumstellar Environment

The formation of polycyclic aromatic hydrocarbons (PAHs) and their methyl derivatives occurs mainly in the dust shells of asymptotic giant branch (AGB) stars. The bands at 3.3 and 3.4 $\mu$m, observed in infrared emission spectra of several objects, are attributed C-H vibrational modes in aromatic and aliphatic structures, respectively. In general, the feature at 3.3 $\mu$m is more intense than the 3.4 $\mu$m. Photoionization and photodissociation processes of toluene, the precursor of methylated PAHs, were studied using synchrotron radiation at soft X-ray energies around the carbon K edge with time-of-flight mass spectrometry. Partial ion yields of a large number of ionic fragments were extracted from single and 2D-spectra, where electron-ion coincidences have revealed the doubly charged parent-molecule and several doubly charged fragments containing seven carbon atoms with considerable abundance. \textit{Ab initio} calculations based on density functional theory were performed to elucidate the chemical structure of these stable dicationic species. The survival of the dications subjected to hard inner shell ionization suggests that they could be observed in the interstellar medium, especially in regions where PAHs are detected. The ionization and destruction of toluene induced by X-rays were examined in the T Dra conditions, a carbon-rich AGB star. In this context, a minimum photodissociation radius and the half-life of toluene subjected to the incidence of the soft X-ray flux emitted from a companion white dwarf star were determined.Comment: 11 pages, 4 figures, accept for publication in Ap

Molecules with a peptide link in protostellar shocks: a comprehensive study of L1157

Interstellar molecules with a peptide link -NH-C(=O)-, like formamide (NH$_2$CHO), acetamide (NH$_2$COCH$_3$) and isocyanic acid (HNCO) are particularly interesting for their potential role in pre-biotic chemistry. We have studied their emission in the protostellar shock regions L1157-B1 and L1157-B2, with the IRAM 30m telescope, as part of the ASAI Large Program. Analysis of the line profiles shows that the emission arises from the outflow cavities associated with B1 and B2. Molecular abundance of $\approx~(0.4-1.1)\times 10^{-8}$ and $(3.3-8.8)\times 10^{-8}$ are derived for formamide and isocyanic acid, respectively, from a simple rotational diagram analysis. Conversely, NH$_2$COCH$_3$ was not detected down to a relative abundance of a few $\leq 10^{-10}$. B1 and B2 appear to be among the richest Galactic sources of HNCO and NH$_2$CHO molecules. A tight linear correlation between their abundances is observed, suggesting that the two species are chemically related. Comparison with astrochemical models favours molecule formation on ice grain mantles, with NH$_2$CHO generated from hydrogenation of HNCO.Comment: 11 pages, 9 figures. Accepted for publication in MNRAS Main Journal. Accepted 2014 August 19, in original form 2014 July

Dissociation of the benzene molecule by UV and soft X-rays in circumstellar environment

Benzene molecules, present in the proto-planetary nebula CRL 618, are ionized and dissociated by UV and X-ray photons originated from the hot central star and by its fast wind. Ionic species and free radicals produced by these processes can lead to the formation of new organic molecules. The aim of this work is to study the photoionization and photodissociation processes of the benzene molecule, using synchrotron radiation and time of flight mass spectrometry. Mass spectra were recorded at different energies corresponding to the vacuum ultraviolet (21.21 eV) and soft X-ray (282-310 eV) spectral regions. The production of ions from the benzene dissociative photoionization is here quantified, indicating that C6H6 is more efficiently fragmented by soft X-ray than UV radiation, where 50% of the ionized benzene molecules survive to UV dissociation while only about 4% resist to X-rays. Partial ion yields of H+ and small hydrocarbons such as C2H2+, C3H3+ and C4H2+ are determined as a function of photon energy. Absolute photoionization and dissociative photoionization cross sections have also been determined. From these values, half-life of benzene molecule due to UV and X-ray photon fluxes in CRL 618 were obtained.Comment: The paper contains 8 pages, 9 figures and 4 tables. Accepted to be published on MNRAS on 2008 November 2

Ionisation and dissociation of cometary gaseous organic molecules by solar wind particles I: Formic Acid

In order to simulate the effects of energetic charged particles present in the solar wind colliding with the cometary gaseous formic acid molecule (HCOOH), laboratory experiments have been performed. The absolute ionisation and dissociation cross sections for this molecule interacting with solar wind particles were measured employing fast electrons in the energy range of 0.5 to 2 keV and energetic protons with energies varying from 0.128 to 2 MeV. Despite the fact that both projectiles lead to a very similar fragmentation pattern, differences in the relative intensities of the fragments were observed. Formic acid survives about 4-5 times more to the proton beam than to the energetic electron collision.The minimum momentum transfer in the electron impact case was estimated to be 3-38% larger than the minimum momentum transfer observed with the equivelocity protons. The UV photodissociation rates and half-lives for HCOOH are roughly closer to the values obtained with energetic electrons. It is consequently important to take electron impact data into account when developing chemical models to simulate the interplanetary conditions.Comment: 11 pages, 7 figures, 5 tables, Accepted to be published in MNRA

Photostability of gas- and solid-phase biomolecules within dense molecular clouds due to soft X-rays

An experimental photochemistry study involving gas- and solid-phase amino acids (glycine, DL-valine, DL-proline) and nucleobases (adenine and uracil) under soft X-rays was performed. The aim was to test the molecular stabilities of essential biomolecules against ionizing photon fields inside dense molecular clouds and protostellar disks analogs. In these environments, the main energy sources are the cosmic rays and soft X-rays. The measurements were taken at the Brazilian Synchrotron Light Laboratory (LNLS), employing 150 eV photons. In-situ sample analysis was performed by Time-of-flight mass spectrometer (TOF-MS) and Fourier transform infrared (FTIR) spectrometer, for gas- and solid- phase analysis, respectively. The half-life of solid phase amino acids, assumed to be present at grain mantles, is at least 3E5 years and 3E8 years inside dense molecular clouds and protoplanetary disks, respectively. We estimate that for gas-phase compounds these values increase one order of magnitude since the dissociation cross section of glycine is lower at gas-phase than at solid phase for the same photon energy. The half-life of solid phase nucleobases is about 2-3 orders of magnitude higher than found for amino acids. The results indicate that nucleobases are much more resistant to ionizing radiation than amino acids. We consider these implications for the survival and transfer of biomolecules in space environments.Comment: 10 pages, 5 figures, 2 tables. Accepted to be published in MNRA

Destruction of formic acid by soft X-rays in star-forming regions

Formic acid is much more abundant in the solid state, both in interstellar ices and cometary ices, than in the interstellar gas (ice/gas ~ 10^{4}) and this point remains a puzzle. The goal of this work is to experimentally study ionization and photodissociation processes of HCOOH (formic acid), a glycine precursor molecule. The measurements were taken at the Brazilian Synchrotron Light Laboratory (LNLS), employing soft X-ray photons from toroidal grating monochromator TGM) beamline (200 - 310 eV). Mass spectra were obtained using photoelectron photoion coincidence (PEPICO) method. Kinetic energy distributions and abundances for each ionic fragment have been obtained from the analysis of the corresponding peak shapes in the mass spectra. Photoionization and photodissociation cross sections were also determined. Due to the large photodissociation cross section of HCOOH it is possible that in PDRs regions, just after molecules evaporation from the grain surface, formic acid molecules are almost totally destroyed by soft X-rays, justifying the observed low abundance of HCOOH in the gaseous phase. The preferential path for the glycine formation from formic acid may be through the ice phase reaction. Keywords: HCOOH; Photoionization; X-rays; Astrochemistry.Comment: 9 pages, 7 figures, 2 tables. Accepted to be printed in A&

Photodissociation of organic molecules in star-forming regions

Fragments from organic molecule dissociation (such as reactive ions and radicals) can form interstellar complex molecules like amino acids. The goal of this work is to experimentally study photoionization and photodissociation processes of acetic acid (CH3COOH), a glycine (NH2CH2COOH) precursor molecule, by soft X-ray photons. The measurements were taken at the Brazilian Synchrotron Light Laboratory (LNLS), employing soft X-ray photons from a toroidal grating monochromator (TGM) beamline (100–310 eV). Mass spectra were obtained using the photoelectron photoion coincidence (PEPICO) method. Kinetic energy distribution and abundances for each ionic fragment have been obtained from the analysis of the corresponding peak shapes in the mass spectra. Absolute photoionization and photodissociation cross sections were also determined. We have found, among the channels leading to ionization, that only 4–6% of CH3COOH survive the strong ionization field. CH3CO+, COOH+ and CH$_3^+$ ions are the main fragments, and the presence of the former may indicate that the production-destruction process of acetic acid in hot molecular cores (HMCs) could decrease the H2O abundance since the net result of this process converts H2O into OH + H+. The COOH+ ion plays an important role in ion-molecule reactions to form large biomolecules like glycine.