Plant Growth-Promoting Rhizobacteria Allow Reduced Application Rates of Chemical Fertilizers

The search for microorganisms that improve soil fertility and enhance plant nutrition has continued to attract attention due to the increasing cost of fertilizers and some of their negative environmental impacts. The objectives of this greenhouse study with tomato were to determine (1) if reduced rates of inorganic fertilizer coupled with microbial inoculants will produce plant growth, yield, and nutrient uptake levels equivalent to those with full rates of the fertilizer and (2) the minimum level to which fertilizer could be reduced when inoculants were used. The microbial inoculants used in the study were a mixture of plant growth-promoting rhizobacteria (PGPR) strains Bacillus amyloliquefaciens IN937a and Bacillus pumilus T4, a formulated PGPR product, and the arbuscular mycorrhiza fungus (AMF), Glomus intraradices. Results showed that supplementing 75% of the recommended fertilizer rate with inoculants produced plant growth, yield, and nutrient (nitrogen and phosphorus) uptake that were statistically equivalent to the full fertilizer rate without inoculants. When inoculants were used with rates of fertilizer below 75% of the recommended rate, the beneficial effects were usually not consistent; however, inoculation with the mixture of PGPR and AMF at 70% fertility consistently produced the same yield as the full fertility rate without inoculants. Without inoculants, use of fertilizer rates lower than the recommended resulted in significantly less plant growth, yield, and nutrient uptake or inconsistent impacts. The results suggest that PGPR-based inoculants can be used and should be further evaluated as components of integrated nutrient management strategies

Increased Plant Uptake of Nitrogen from \u3csup\u3e15\u3c/sup\u3eN-depleted Fertilizer Using Plant Growth-Promoting Rhizobacteria

Harmful environmental effects resulting from fertilizer use have spurred research into integrated nutrient management strategies which can include the use of specific microorganisms to enhance nutrient use efficiency by plants. Some strains of plant growth-promoting rhizobacteria (PGPR) have been reported to enhance nutrient uptake by plants, but no studies with PGPR have used 15N isotope techniques to prove that the increased N in plant tissues came from the N applied as fertilizer. The current study was conducted to demonstrate that a model PGPR system can enhance plant uptake of fertilizer N applied to the soil using different rates of 15N-depleted ammonium sulfate. The experiments were conducted in the greenhouse with tomato using a mixture of PGPR strains Bacillus amyloliquefaciens IN937a and Bacillus pumilus T4. Results showed that PGPR together with reduced amounts of fertilizer promoted tomato growth compared to fertilizer without PGPR. In addition, atom% 15N per gram of plant tissue decreased as the amount of fertilizer increased, and PGPR inoculation resulted in a further decrease of the atom% 15N values. The atom% 15N abundance in plants that received 80% fertilizer plus PGPR was 0.1146, which was significantly lower than 0.1441 for plants that received 80% fertilizer without PGPR and statistically equivalent to 0.1184 for plants that received 100% fertilizer without PGPR. The results demonstrate that increased plant uptake of N applied in fertilizer could be achieved with PGPR as indicated by the differences in 15N uptake. Strains of PGPR that lead to increased nutrient uptake by plants should be evaluated further as components in integrated nutrient management systems

Genome-Wide Association Study and Pathway-Level Analysis of Kernel Color in Maize.

Rapid development and adoption of biofortified, provitamin A-dense orange maize (Zea mays L.) varieties could be facilitated by a greater understanding of the natural variation underlying kernel color, including as it relates to carotenoid biosynthesis and retention in maize grain. Greater abundance of carotenoids in maize kernels is generally accompanied by deeper orange color, useful for distinguishing provitamin A-dense varieties to consumers. While kernel color can be scored and selected with high-throughput, low-cost phenotypic methods within breeding selection programs, it remains to be well established as to what would be the logical genetic loci to target for selection for kernel color. We conducted a genome-wide association study of maize kernel color, as determined by colorimetry, in 1,651 yellow and orange inbreds from the Ames maize inbred panel. Associations were found with y1, encoding the first committed step in carotenoid biosynthesis, and with dxs2, which encodes the enzyme responsible for the first committed step in the biosynthesis of the isoprenoid precursors of carotenoids. These genes logically could contribute to overall carotenoid abundance and thus kernel color. The lcyE and zep1 genes, which can affect carotenoid composition, were also found to be associated with colorimeter values. A pathway-level analysis, focused on genes with a priori evidence of involvement in carotenoid biosynthesis and retention, revealed associations for dxs3 and dmes1, involved in isoprenoid biosynthesis; ps1 and vp5, within the core carotenoid pathway; and vp14, involved in cleavage of carotenoids. Collectively, these identified genes appear relevant to the accumulation of kernel color

Fescues with Large Roots are Drought Tolerant

Consideration of root/soil interactions is essential in, adapting tall fescue (Festuca arundinacea Schreb.) to soil and climatic conditions of the Coastal Plain region of the southeast. Sandy soils of the region are very susceptible to the formation of hardpans. These compacted layers often restrict plant root development to the plow layer (0 to 6 in.) and prevent plant roots from reaching available moisture and nutrients in the subsoil horizons. Plants grown under these conditions are shallow rooted and will be subjected to water stress up to 50% of the time during the growing season. Although implements are available to penetrate the hardpan, they have high energy requirements and provide temporary remedies. The limitation of root growth due to compaction layers has been cited as a causal factor of drought stress and resulting stand decline of tall fescue in the southeast. Research was initiated to determine the differences in soil water extraction of four fescue lines with different root characteristics and “Kentucky 31” (KY-31) fescue used as a check. The fescues were grown on a sandy loam Coastal Plain soil with a known compacted zone at a depth of 0.4 to 0.6 m (16 to 24 in.). Two fescue lines with large diameter roots (LOR) in the range of 0.92 to 1.03 µm and xylem diameters of 0.16 to 0.19 µm penetrated the hardpan and extracted soil water to a depth of 48 in. In two fescue lines with a small diameter roots (SDR) less than 0.9 µm soil water extraction was restricted to the soil volume above 0.6 m. The increase in soil watertemoved from depths greater than 0.6 m was reflected in a 40% increase in dry matter yield for the LDR lines as compared to the SDR fescue lines. The LDR fescue lines offer genetic germplasm to be incorporated into a breeding program to improve drought tolerance of fescue in the southeast

Impact of Poultry Litter Cake, Cleanout, and Bedding following Chemical Amendments on Soil C and N Mineralization

Poultry litter is a great alternative N source for crop production. However, recent poultry litter management changes, and increased chemical amendment use may impact its N availability. Thus, research was initiated to evaluate the effect that broiler cake and total cleanout litter amended with chemical additives have on C and N mineralization. A 35-day incubation study was carried out on a Hartsells fine sandy loam (fine-loamy, siliceous, subactive, thermic Typic Hapludults) soil common to the USA Appalachian Plateau region. Three poultry litter components (broiler cake, total cleanout, and bedding material) from a broiler house were evaluated and compared to a soil control. Chemical amendments lime (CaCO3), gypsum (CaSO4), aluminum sulfate (AlSO4), and ferrous sulfate (FeSO4) were added to the poultry litter components to determine their impact on C and N mineralization. Litter component additions increased soil C mineralization in the order of broiler cake > total cleanout > bedding > soil control. Although a greater concentration of organic C was observed in the bedding, broiler cake mineralized the most C, which can be attributed to differences in the C : N ratio between treatments. Chemical amendment in addition to the manured soil also impacted C mineralization, with AlSO4 generally decreasing mineralization. Nitrogen mineralization was also significantly affected by poultry litter component applications. Broiler cake addition increased N availability followed by total cleanout compared to soil control, while the bedding resulted in net N immobilization. Chemical amendments impacted N mineralization primarily in the broiler cake amended soil where all chemical amendments decreased mineralization compared to the no chemical amendment treatment. This short-term study (35-day incubation) indicates that N availability to crops may be different depending on the poultry litter component used for fertilization and chemical amendment use which could decrease N mineralization

Impact of Poultry Litter Cake, Cleanout, and Bedding following Chemical Amendments on Soil C and N Mineralization

Poultry litter is a great alternative N source for crop production. However, recent poultry litter management changes, and increased chemical amendment use may impact its N availability. Thus, research was initiated to evaluate the effect that broiler cake and total cleanout litter amended with chemical additives have on C and N mineralization. A 35-day incubation study was carried out on a Hartsells fine sandy loam (fine-loamy, siliceous, subactive, thermic Typic Hapludults) soil common to the USA Appalachian Plateau region. Three poultry litter components (broiler cake, total cleanout, and bedding material) from a broiler house were evaluated and compared to a soil control. Chemical amendments lime (CaCO 3 ), gypsum (CaSO 4 ), aluminum sulfate (AlSO 4 ), and ferrous sulfate (FeSO 4 ) were added to the poultry litter components to determine their impact on C and N mineralization. Litter component additions increased soil C mineralization in the order of broiler cake > total cleanout > bedding > soil control. Although a greater concentration of organic C was observed in the bedding, broiler cake mineralized the most C, which can be attributed to differences in the C : N ratio between treatments. Chemical amendment in addition to the manured soil also impacted C mineralization, with AlSO 4 generally decreasing mineralization. Nitrogen mineralization was also significantly affected by poultry litter component applications. Broiler cake addition increased N availability followed by total cleanout compared to soil control, while the bedding resulted in net N immobilization. Chemical amendments impacted N mineralization primarily in the broiler cake amended soil where all chemical amendments decreased mineralization compared to the no chemical amendment treatment. This short-term study (35-day incubation) indicates that N availability to crops may be different depending on the poultry litter component used for fertilization and chemical amendment use which could decrease N mineralization

EMIC Waves in the Outer Magnetosphere: Observations of an Off-Equator Source Region.

Electromagnetic ion cyclotron (EMIC) waves at large L shells were observed away from the magnetic equator by the Magnetospheric MultiScale (MMS) mission nearly continuously for over four hours on 28 October 2015. During this event, the wave Poynting vector direction systematically changed from parallel to the magnetic field (toward the equator), to bidirectional, to antiparallel (away from the equator). These changes coincide with the shift in the location of the minimum in the magnetic field in the southern hemisphere from poleward to equatorward of MMS. The local plasma conditions measured with the EMIC waves also suggest that the outer magnetospheric region sampled during this event was generally unstable to EMIC wave growth. Together, these observations indicate that the bidirectionally propagating wave packets were not a result of reflection at high latitudes but that MMS passed through an off-equator EMIC wave source region associated with the local minimum in the magnetic field

Excitation of EMIC waves detected by the Van Allen Probes on 28 April 2013

Abstract We report the wave observations, associated plasma measurements, and linear theory testing of electromagnetic ion cyclotron (EMIC) wave events observed by the Van Allen Probes on 28 April 2013. The wave events are detected in their generation regions as three individual events in two consecutive orbits of Van Allen Probe-A, while the other spacecraft, B, does not detect any significant EMIC wave activity during this period. Three overlapping H+ populations are observed around the plasmapause when the waves are excited. The difference between the observational EMIC wave growth parameter (Eh) and the theoretical EMIC instability parameter (Sh) is significantly raised, on average, to 0.10 ± 0.01, 0.15 ± 0.02, and 0.07 ± 0.02 during the three wave events, respectively. On Van Allen Probe-B, this difference never exceeds 0. Compared to linear theory (Eh\u3eSh), the waves are only excited for elevated thresholds

A foundation for provitamin A biofortification of maize: genome-wide association and genomic prediction models of carotenoid levels.

Efforts are underway for development of crops with improved levels of provitamin A carotenoids to help combat dietary vitamin A deficiency. As a global staple crop with considerable variation in kernel carotenoid composition, maize (Zea mays L.) could have a widespread impact. We performed a genome-wide association study (GWAS) of quantified seed carotenoids across a panel of maize inbreds ranging from light yellow to dark orange in grain color to identify some of the key genes controlling maize grain carotenoid composition. Significant associations at the genome-wide level were detected within the coding regions of zep1 and lut1, carotenoid biosynthetic genes not previously shown to impact grain carotenoid composition in association studies, as well as within previously associated lcyE and crtRB1 genes. We leveraged existing biochemical and genomic information to identify 58 a priori candidate genes relevant to the biosynthesis and retention of carotenoids in maize to test in a pathway-level analysis. This revealed dxs2 and lut5, genes not previously associated with kernel carotenoids. In genomic prediction models, use of markers that targeted a small set of quantitative trait loci associated with carotenoid levels in prior linkage studies were as effective as genome-wide markers for predicting carotenoid traits. Based on GWAS, pathway-level analysis, and genomic prediction studies, we outline a flexible strategy involving use of a small number of genes that can be selected for rapid conversion of elite white grain germplasm, with minimal amounts of carotenoids, to orange grain versions containing high levels of provitamin A

Alfvén waves in the near-PSBL lobe: Cluster observations

Electromagnetic low-frequency waves in the magnetotail lobe close to the PSBL (Plasma Sheet Boundary Layer) are studied using the Cluster spacecraft. The lobe waves show Alfvénic properties and transport their wave energy (Poynting flux) on average toward the Earth along magnetic field lines. Most of the wave events are rich with oxygen (O+) ion plasma. The rich O+ plasma can serve to enhance the magnetic field fluctuations, resulting in a greater likelihood of observation, but it does not appear to be necessary for the generation of the waves. Taking into account the fact that all events are associated with auroral electrojet enhancements, the source of the lobe waves might be a substorm-associated instability, i.e. some instability near the reconnection site, or an ion beam-related instability in the PSBL