Real-time dynamics of clusters. III. I_2Ne_n (n=2–4), picosecond fragmentation, and evaporation

In this paper (III) we report real-time studies of the picosecond dynamics of iodine in Ne clusters I*2Nen(n = 2–4) --> I*2 + nNe. The results are discussed in relation to vibrational predissociation (VP), basic to the I2X systems, and to the onset of intramolecular vibrational-energy redistribution (IVR). The latter process, which is a precursor for the evaporation of the host atoms or for further fragmentation, is found to be increasingly effective as the cluster size increases; low-energy van der Waals modes act as the accepting (bath) modes. The reaction dynamics for I2Ne2 are examined and quantitatively compared to a simple model which describes the dynamics as consecutive bond breaking. On this basis, it is concluded that the onset of energy redistribution is observed in I2Ne2. Comparison of I2Ne and I2Ne2 to larger clusters (n=3,4) is accomplished by introducing an overall effective reaction rate. From measurements of the rates and their dependence on v[script ']i, the initial quantum number of the I2 stretch, we are able to examine the dynamics of direct fragmentation and evaporation, and compare with theory

Real-time dynamics of clusters. II. I_2X_n (n=1; X=He, Ne, and H_2), picosecond fragmentation

In this second paper (II) of a series, we report our picosecond time-resolved studies of the state-to-state rates of vibrational predissociation in iodine–rare gas (van der Waals) clusters. Particular focus is on the simplest system, I2He, which serves as a benchmark for theoretical modeling. Comparisons with I2Ne and I2H2 are also presented. The results from measurements made in real time are compared with those deduced from linewidth measurements, representing a rare example of a system studied by both methods under identical conditions and excited to the same quantum (v[script ']i) states. The discrepancies are discussed in relation to the origin of the broadening and preparation of the state. The rates as a function of v[script ']i display a nonlinear behavior which is examined in relation to the energy-gap law. The measured absolute rates and their dependence on v[script ']i are compared with numerous calculations invoking classical, quantum, and semiclassical theories. In the following paper (III in this series), the cluster size of the same system, I2Xn, is increased (n=2–4) and the dynamics are studied

Deconvoluting mTOR biology

In metazoans, TOR is an essential protein that functions as a master regulator of cellular growth and proliferation. Over the past decade, there has been an explosion of information about this critical master kinase, ranging from the composition of the TOR protein complex to its ability to act as an integrator of numerous extracellular signals. Unfortunately, this plethora of information has also raised numerous questions regarding TOR function. Currently, the prevailing view is that mammalian TOR (mTOR) exists in at least two molecular complexes, mTORC1 and mTORC2, which are largely defined by the presence of either RAPTOR or RICTOR. However, additional co-factors have been identified for each complex, and their importance in mediating mTOR signals has been incompletely elucidated. Similarly, there are differences in mTOR function that reflect the tissue of origin. In this review, we present an alternative view to mTOR complex formation and function, which envisions mTOR regulation and signal propagation as a reflection of cell type- and basal state-dependent conditions. The re-interpretation of mTOR biology in this framework may facilitate the design of therapies most likely to effectively inhibit this central regulator of cell behavior

Direct observation of the picosecond dynamics of I_2-Ar fragmentation

Picosecond real‐time observations of the dynamics of I_2–Ar fragmentation are reported. The state‐to‐state rates, k(ν^i,,ν^f,), are directly measured and related to the homogeneous broadening of the initial state, and to product state distributions in the exit channel. Comparisons with different theories of vibrational (and electronic) predissociation are made

A conserved alternative splice in the von Recklinghausen neurofibromatosis (NF1) gene produces two neurofibromin isoforms, both of which have GTPase-activating protein activity

Sequence analysis has shown significant homology between the catalytic regions of the mammalian ras GTPase-activating protein (GAP), yeast Ira1p and Ira2p (inhibitory regulators of the RAS-cyclic AMP pathway), and neurofibromin, the protein encoded by the NF1 gene. Yeast expression experiments have confirmed that a 381-amino-acid segment of neurofibromin, dubbed the GAP-related domain (GRD), can function as a GAP. Using the RNA polymerase chain reaction with primers flanking the NF1-GRD, we have identified evidence for alternative splicing in this region of the NF1 gene. In addition to the already published sequence (type I), an alternative RNA carrying a 63-nucleotide insertion (type II) is present in all tissues examined, although the relative amounts of types I and II vary. The insertion is conserved across species but is not present in GAP, IRA1, or IRA2. GenBank searches have failed to identify significant similarity between the inserted sequence and known DNA or protein sequences, although the basic amino acid composition of the insertion shares features with nuclear targeting sequences. Expression studies in yeasts show that despite the partial disruption of the neurofibromin-IRA-GAP homology by this insertion, both forms of the NF1-GRD can complement loss of IRA function. In vivo assays designed to compare the GAP activity of the two alternatively spliced forms of the NF1-GRD show that both can increase the conversion of GTP-bound ras to its GDP-bound form, although the insertion of the 21 amino acids weakens this effect. The strong conservation of this alternative, splicing suggests that both type I and II isoforms mediate important biological functions of neurofibromin

Effects of dissipation in an adiabatic quantum search algorithm

We consider the effect of two different environments on the performance of the quantum adiabatic search algorithm, a thermal bath at finite temperature, and a structured environment similar to the one encountered in systems coupled to the electromagnetic field that exists within a photonic crystal. While for all the parameter regimes explored here, the algorithm performance is worsened by the contact with a thermal environment, the picture appears to be different when considering a structured environment. In this case we show that, by tuning the environment parameters to certain regimes, the algorithm performance can actually be improved with respect to the closed system case. Additionally, the relevance of considering the dissipation rates as complex quantities is discussed in both cases. More particularly, we find that the imaginary part of the rates can not be neglected with the usual argument that it simply amounts to an energy shift, and in fact influences crucially the system dynamics.Comment: 18 pages, 9 figure

Convergence theorems for quantum annealing

We prove several theorems to give sufficient conditions for convergence of quantum annealing, which is a protocol to solve generic optimization problems by quantum dynamics. In particular the property of strong ergodicity is proved for the path-integral Monte Carlo implementation of quantum annealing for the transverse Ising model under a power decay of the transverse field. This result is to be compared with the much slower inverse-log decay of temperature in the conventional simulated annealing. Similar results are proved for the Green's function Monte Carlo approach. Optimization problems in continuous space of particle configurations are also discussed.Comment: 19 page

Generation and Suppression of Decoherence in Artificial Environment for Qubit System

It is known that a quantum system with finite degrees of freedom can simulate a composite of a system and an environment if the state of the hypothetical environment is randomized by external manipulation. We show theoretically that any phase decoherence phenomena of a single qubit can be simulated with a two-qubit system and demonstrate experimentally two examples: one is phase decoherence of a single qubit in a transmission line, and the other is that in a quantum memory. We perform NMR experiments employing a two-spin molecule and clearly measure decoherence for both cases. We also prove experimentally that the bang-bang control efficiently suppresses decoherence.Comment: 25 pages, 7 figures; added reference