The ecological niche of storm-petrels in the North Pacific and a global model of dimethylsulfide concentration

Thesis (M.S.) University of Alaska Fairbanks, 2010Ecological niche modeling techniques were used to create global, monthly predictions of sea surface dimethylsulfide (DMS) concentrations, and breeding season distribution of Leach's Storm-Petrel (Oceanodroma luncorhoa) and Fork-Tailed Storm-Petrel (O. furcata) in the North Pacific. This work represents the first attempt to model DMS concentrations on a global scale using ecological niche modeling, and the first models of Storm-Petrel distribution for the North Pacific. Storm-Petrels have been shown to be attracted to DMS, and it is therefore likely that a model of sea surface DMS concentration would help explain and predict Storm-Petrel distribution. We have successfully created the most accurate models of sea surface DMS concentrations that we are currently aware of with global correlation (r) values greater than 0.45. We also created Storm-Petrel models with area under the receiver operating characteristic curve (AUC) values of greater than 0.90. Using just DMS as a predictor variable we were also able to create models with AUC values upwards of 0.84. Future conservation efforts on pelagic seabird species may be dependent on models like the ones created here, and it is therefore important that these methods are improved upon to help seabird management on all scales (global, national, regional and local).General introduction -- Storm-petrels of the North Pacific -- Dimethylsulfide -- Ecological niche modeling -- Data mining (TreeNet) -- Study goals -- References -- 1. Predicting monthly surface seawater dimethylsulfide (DMS) concentrations on a global scale using a machine learning algorithm (TreeNet) -- 2. Predicted distribution of storm-petrels (Oceanodroma) in the North Pacific using Geographic Information Systems (GIS), TreeNet and dimethylsulfide (DMS) concentrations -- Acknowledgements -- Literature cited -- General conclusions -- Dimethylsulfide -- Storm petrels -- Final conclusions -- References -- Appendices

Hotspots of seabirds and marine mammals between New Zealand and the Ross Gyre: importance of hydrographic features

This article is part of our long-term study on the quantitative at-sea distribution of the marine “upper trophic levels”—seabirds and marine mammals—in polar ecosystems, aiming at quantifying the factors influencing their distribution as well as detecting possible spatial and temporal changes, with special attention to hydrography and to global climate changes. During an expedition of icebreaking RV Polarstern in February 2010, along the North–South transect between New Zealand and the Ross Gyre, off the Ross Sea, 3200 seabirds belonging to 22 identified pelagic species were recorded during 338 half-hour transect counts. Four major hotspots were identified. These were in Sub-tropical Water off New Zealand (up to 300 birds per count), and at the main Southern Ocean fronts: the Sub-Antarctic Front (up to 240 per count), the Antarctic Front (up to 150 per count) and the Polar Front (up to 200 per count), representing the vast majority of recorded seabirds. The most numerous species in the three frontal zones were: prions—mainly slender-billed Pachyptila belcheri—and Salvin’s albatross Thalassarche [cauta] salvini. The eight more abundant species represented 2650 birds, i.e. more than 80% of the total. A random forest clustering method identified four groups of seabird species occupying similar oceanographic niches

Major hotspots detected along the Scotia Ridge in autumn for southern right whales Eubalaena australis, Antarctic fur seals Arctocephalus gazella and Antarctic prions Pachyptila desolata

We investigated the role of hydrological features, such as water masses, fronts, eddies, and sea ice, in affecting the distribution of upper trophic level species in the Scotia Sea region during autumn. On board RV Polarstern, we performed 365 30-min strip transects recording seabirds and marine mammals along the North Scotia Ridge and the South Sandwich Trench in March—April 2013. Among the 7 identified cetacean species recorded, the humpback whale Megaptera novaeangliae was the most abundant baleen whale (40 individuals), and noteworthy were sightings of six southern right whales Eubalaena australis. Pinnipeds (3 species, 1650 individuals) were dominated by Antarctic fur seal Arctocephalus gazella (99%), and seabirds (36 species, 18900 individuals) by Antarctic prion Pachyptila desolata (~50%). The distribution of these top predators was highly patchy with the majority of observations concentrated in a few counts. This heterogeneity is likely a result of prey availability, and we discuss how hydrological features may have caused the patchiness

Metal hydrides for concentrating solar thermal power energy storage

The development of alternative methods for thermal energy storage is important for improving the efficiency and decreasing the cost for Concentrating Solar-thermal Power (CSP). We focus on the underlying technology that allows metal hydrides to function as Thermal Energy Storage (TES) systems and highlight the current state-of-the-art materials that can operate at temperatures as low as room-temperature and as high as 1100 oC. The potential of metal hydrides for thermal storage is explored while current knowledge gaps about hydride properties, such as hydride thermodynamics, intrinsic kinetics and cyclic stability, are identified. The engineering challenges associated with utilising metal hydrides for high-temperature thermal energy storage are also addressed

Polymorphisms near EXOC4 and LRGUK on chromosome 7q32 are associated with Type 2 Diabetes and fasting glucose; The NHLBI Family Heart Study

This is an Open Access article distributed under the terms of the Creative Commons Attribution Licens

TCF7L2 variant genotypes and type 2 diabetes risk in Brazil: significant association, but not a significant tool for risk stratification in the general population

<p>Abstract</p> <p>Background</p> <p>Genetic polymorphisms of the <it>TCF7L2 </it>gene are strongly associated with large increments in type 2 diabetes risk in different populations worldwide. In this study, we aimed to confirm the effect of the <it>TCF7L2 </it>polymorphism <it>rs7903146 </it>on diabetes risk in a Brazilian population and to assess the use of this genetic marker in improving diabetes risk prediction in the general population.</p> <p>Methods</p> <p>We genotyped the single nucleotide polymorphisms (SNP) rs7903146 of the <it>TCF7L2 </it>gene in 560 patients with known coronary disease enrolled in the MASS II (Medicine, Angioplasty, or Surgery Study) Trial and in 1,449 residents of Vitoria, in Southeast Brazil. The associations of this gene variant to diabetes risk and metabolic characteristics in these two different populations were analyzed. To access the potential benefit of using this marker for diabetes risk prediction in the general population we analyzed the impact of this genetic variant on a validated diabetes risk prediction tool based on clinical characteristics developed for the Brazilian general population.</p> <p>Results</p> <p>SNP rs7903146 of the <it>TCF7L2 </it>gene was significantly associated with type 2 diabetes in the MASS-II population (OR = 1.57 per T allele, p = 0.0032), confirming, in the Brazilian population, previous reports of the literature. Addition of this polymorphism to an established clinical risk prediction score did not increased model accuracy (both area under ROC curve equal to 0.776).</p> <p>Conclusion</p> <p><it>TCF7L2 </it>rs7903146 T allele is associated with a 1.57 increased risk for type 2 diabetes in a Brazilian cohort of patients with known coronary heart disease. However, the inclusion of this polymorphism in a risk prediction tool developed for the general population resulted in no improvement of performance. This is the first study, to our knowledge, that has confirmed this recent association in a South American population and adds to the great consistency of this finding in studies around the world. Finally, confirming the biological association of a genetic marker does not guarantee improvement on already established screening tools based solely on demographic variables.</p

Light-Dependant Biostabilisation of Sediments by Stromatolite Assemblages

For the first time we have investigated the natural ecosystem engineering capacity of stromatolitic microbial assemblages. Stromatolites are laminated sedimentary structures formed by microbial activity and are considered to have dominated the shallows of the Precambrian oceans. Their fossilised remains are the most ancient unambiguous record of early life on earth. Stromatolites can therefore be considered as the first recognisable ecosystems on the planet. However, while many discussions have taken place over their structure and form, we have very little information on their functional ecology and how such assemblages persisted despite strong eternal forcing from wind and waves. The capture and binding of sediment is clearly a critical feature for the formation and persistence of stromatolite assemblages. Here, we investigated the ecosystem engineering capacity of stromatolitic microbial assemblages with respect to their ability to stabilise sediment using material from one of the few remaining living stromatolite systems (Highborne Cay, Bahamas). It was shown that the most effective assemblages could produce a rapid (12–24 h) and significant increase in sediment stability that continued in a linear fashion over the period of the experimentation (228 h). Importantly, it was also found that light was required for the assemblages to produce this stabilisation effect and that removal of assemblage into darkness could lead to a partial reversal of the stabilisation. This was attributed to the breakdown of extracellular polymeric substances under anaerobic conditions. These data were supported by microelectrode profiling of oxygen and calcium. The structure of the assemblages as they formed was visualised by low-temperature scanning electron microscopy and confocal laser microscopy. These results have implications for the understanding of early stromatolite development and highlight the potential importance of the evolution of photosynthesis in the mat forming process. The evolution of photosynthesis may have provided an important advance for the niche construction activity of microbial systems and the formation and persistence of the stromatolites which came to dominate shallow coastal environments for 80% of the biotic history of the earth

Effects of branching spatial structure and life history on the asymptotic growth rate of a population

Author Posting. © The Author(s), 2009. This is the author's version of the work. It is posted here by permission of Springer for personal use, not for redistribution. The definitive version was published in Theoretical Ecology 3 (2010): 137-152, doi:10.1007/s12080-009-0058-0.The dendritic structure of a river network creates directional dispersal and a hierarchical arrangement of habitats. These two features have important consequences for the ecological dynamics of species living within the network.We apply matrix population models to a stage-structured population in a network of habitat patches connected in a dendritic arrangement. By considering a range of life histories and dispersal patterns, both constant in time and seasonal, we illustrate how spatial structure, directional dispersal, survival, and reproduction interact to determine population growth rate and distribution. We investigate the sensitivity of the asymptotic growth rate to the demographic parameters of the model, the system size, and the connections between the patches. Although some general patterns emerge, we find that a species’ mode of reproduction and dispersal are quite important in its response to changes in its life history parameters or in the spatial structure. The framework we use here can be customized to incorporate a wide range of demographic and dispersal scenarios.Funding for this work came from the James S. McDonnell Foundation (EEG, HJL, WFF). MGN was supported by grants from the National Science Foundation (CMG-0530830, OCE-0326734, ATM-0428122)

Transferability of Type 2 Diabetes Implicated Loci in Multi-Ethnic Cohorts from Southeast Asia

Recent large genome-wide association studies (GWAS) have identified multiple loci which harbor genetic variants associated with type 2 diabetes mellitus (T2D), many of which encode proteins not previously suspected to be involved in the pathogenesis of T2D. Most GWAS for T2D have focused on populations of European descent, and GWAS conducted in other populations with different ancestry offer a unique opportunity to study the genetic architecture of T2D. We performed genome-wide association scans for T2D in 3,955 Chinese (2,010 cases, 1,945 controls), 2,034 Malays (794 cases, 1,240 controls), and 2,146 Asian Indians (977 cases, 1,169 controls). In addition to the search for novel variants implicated in T2D, these multi-ethnic cohorts serve to assess the transferability and relevance of the previous findings from European descent populations in the three major ethnic populations of Asia, comprising half of the world's population. Of the SNPs associated with T2D in previous GWAS, only variants at CDKAL1 and HHEX/IDE/KIF11 showed the strongest association with T2D in the meta-analysis including all three ethnic groups. However, consistent direction of effect was observed for many of the other SNPs in our study and in those carried out in European populations. Close examination of the associations at both the CDKAL1 and HHEX/IDE/KIF11 loci provided some evidence of locus and allelic heterogeneity in relation to the associations with T2D. We also detected variation in linkage disequilibrium between populations for most of these loci that have been previously identified. These factors, combined with limited statistical power, may contribute to the failure to detect associations across populations of diverse ethnicity. These findings highlight the value of surveying across diverse racial/ethnic groups towards the fine-mapping efforts for the casual variants and also of the search for variants, which may be population-specific