Morphological and microsatellite DNA diversity of Djallonké sheep in Guinea Bissau

BACKGROUND: The present study aimed at characterizing the Djallonké Sheep (DS), the only local sheep breed raised in Guinea-Bissau. A total of 200 animals were sampled from four regions (Bafatá, Gabú, Oio and Cacheu) and described using 7 visual criteria and 8 measurements. These parameters have been studied by principal components analysis. The genetic diversity and population structure of 92 unrelated animals were studied using 12 microsatellite markers. RESULTS: The values of quantitative characters in the Bafatá region were significantly higher than those obtained in the other three regions. A phenotypic diversity of the DS population was observed and three genetic types distinguished: animals with “large traits” in the region of Bafatá, animals with “intermediate traits” in the regions of Gabú and Oio and animals with “small traits” in the Cacheu region. The hair coat colors are dominated by the white color, the shape of the facial head profile is mainly convex and the ears “erected horizontally”. Most of the morphobiometric characteristics were significantly influenced by the “region” and “sex of animals”. The average Polymorphism Information Content (PIC) of 0.65 ± 0.11 supports the use of markers in genetic characterization. Gabú subpopulation had the highest genetic diversity measures (He = 0.716 ± 0.089) while Cacheu DS subpopulation presented the smallest (He = 0.651 ± 0.157). Only Gabú and Bafatá subpopulations presented significant heterozygote deficiency across all loci indicating possible significant inbreeding. Mean values for F(IT,) F(ST), F(IS) and G(ST) statistics across all loci were 0.09, 0.029, 0.063 and 0.043 respectively. The overall genetic differentiation observed between the four DS subpopulations studied was low. Bafatá and Gabú are the most closely related subpopulations (D(S) = 0.04, genetic identity = 0.96) while Bafatá and Cacheu were the most genetically distant subpopulations (D(S) = 0.14, genetic identity = 0.87). Using Bayesian approach, the number of K groups that best fit the data is detected between 2 and 3, which is consistent with the morphological analysis and the factorial analysis of correspondence. CONCLUSIONS: The molecular results on DS population of Guinea-Bissau confirmed the ones obtained with morphological analysis. The three genetic types observed phenotypically might be due to a combination of the agro-ecological differences and the management of breeding rather than genetic factors. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12863-021-01009-7

Morphological and Microsatellite DNA Diversity of Djallonké Sheep in Guinea-Bissau

Abstract Background: The present study aimed at characterizing the Djallonké Sheep (DS), the only local sheep breed raised in Guinea-Bissau. A total of 200 animals were sampled from four regions (Bafatá, Gabú, Oio and Cacheu) and described using 7 visual criteria and 8 measurements. These parameters have been studied by discriminant analysis and principal components analysis. The genetic diversity and population structure of 92 unrelated animals were studied using 12 microsatellite markers.Results: The values of quantitative characters in the Bafatá region were significantly higher than those obtained in the other three regions. A phenotypic diversity of the DS population was observed and three types of format distinguished: a “large format” in the region of Bafatá, an “intermediate format” in the regions of Gabú and Oio and a "small format" in the Cacheu region. The hair coat colors are dominated by the white color, the shape of the facial head profile is mainly convex and the ears "erected horizontally". Most of the morphobiometric characteristics were significantly influenced by the “region” and “sex of animals”.The average Polymorphism Information Content (PIC) of 0.65 ± 0.11 supports the use of markers in genetic characterization. Gabú subpopulation had the highest genetic diversity measures (He = 0.716 ± 0.089) while Cacheu DS subpopulation presented the smallest (He = 0.651 ± 0.157). Only Gabú and Bafatá subpopulations presented significant heterozygote deficiency across all loci indicating possible significant inbreeding. Mean values for FIT, FST, FIS and GST statistics across all loci were 0.09, 0.029, 0.063 and 0.043 respectively. The overall genetic differentiation observed between the four DS subpopulations studied was low. Bafatá and Gabú were the most closely related subpopulations (DS = 0.04, genetic identity = 0.96) while Bafatá and Cacheu were the most genetically distant subpopulations (DS = 0.14, genetic identity = 0.87), which is consistent with the morphological analysis and the factorial analysis of correspondence. Conclusions: The molecular results on DS population of Guinea-Bissau confirmed the ones obtained with morphological analysis. The three formats observed phenotypically might be due to a combination of the agro-ecological differences and the management of breeding rather than genetic factors.</jats:p

Morphological and microsatellite DNA diversity of Djallonké sheep in Guinea-Bissau

AbstractBackgroundThe present study aimed at characterizing the Djallonké Sheep (DS), the only local sheep breed raised in Guinea-Bissau. A total of 200 animals were sampled from four regions (Bafatá, Gabú, Oio and Cacheu) and described using 7 visual criteria and 8 measurements. These parameters have been studied by principal components analysis. The genetic diversity and population structure of 92 unrelated animals were studied using 12 microsatellite markers.ResultsThe values of quantitative characters in the Bafatá region were significantly higher than those obtained in the other three regions. A phenotypic diversity of the DS population was observed and three genetic types distinguished: animals with “large traits” in the region of Bafatá, animals with “intermediate traits” in the regions of Gabú and Oio and animals with “small traits” in the Cacheu region. The hair coat colors are dominated by the white color, the shape of the facial head profile is mainly convex and the ears “erected horizontally”. Most of the morphobiometric characteristics were significantly influenced by the “region” and “sex of animals”.The average Polymorphism Information Content (PIC) of 0.65 ± 0.11 supports the use of markers in genetic characterization. Gabú subpopulation had the highest genetic diversity measures (He = 0.716 ± 0.089) while Cacheu DS subpopulation presented the smallest (He = 0.651 ± 0.157). Only Gabú and Bafatá subpopulations presented significant heterozygote deficiency across all loci indicating possible significant inbreeding. Mean values forFIT,FST, FISandGSTstatistics across all loci were 0.09, 0.029, 0.063 and 0.043 respectively. The overall genetic differentiation observed between the four DS subpopulations studied was low. Bafatá and Gabú are the most closely related subpopulations (DS = 0.04, genetic identity = 0.96) while Bafatá and Cacheu were the most genetically distant subpopulations (DS = 0.14, genetic identity = 0.87). Using Bayesian approach, the number of K groups that best fit the data is detected between 2 and 3, which is consistent with the morphological analysis and the factorial analysis of correspondence.ConclusionsThe molecular results on DS population of Guinea-Bissau confirmed the ones obtained with morphological analysis. The three genetic types observed phenotypically might be due to a combination of the agro-ecological differences and the management of breeding rather than genetic factors.</jats:sec

Additional file 1 of Morphological and microsatellite DNA diversity of Djallonké sheep in Guinea-Bissau

Additional file 1: Figure S1. Map (study area) of the origins of Djallonké sheep sub-populations

Suscetibilidade de larvas de Aedes aegypti ao inseticida temefós no Distrito Federal Susceptibility of Aedes aegypti larvae to the insecticide temephos in the Federal District, Brazil

OBJETIVO: Estudar o padrão de suscetibilidade do Aedes aegypti ao inseticida organofosforado temefós. MÉTODOS: Amostras de larvas de Ae. aegypti foram obtidas com armadilhas para oviposição, em oito cidades do Distrito Federal, nos anos 2000 e 2001. As larvas foram submetidas à dose diagnóstica de 0,012 mg/l de temefós, segundo metodologia padronizada pela Organização Mundial da Saúde. As populações de campo foram testadas em paralelo com a cepa de referência Rockefeller e a cepa DIVAL, do insetário da Diretoria de Vigilância Ambiental. A concentração e a pureza das soluções de temefós foram analisadas por cromatografia gasosa. Os cálculos de correlação foram determinados pelo programa StatView - SAS Institute Inc., versão 5. Utilizou-se o teste t de Student para verificar diferenças de suscetibilidade, com níveis de significância, alfa=0,05. RESULTADOS: Em 2000, as populações de larvas de Ae. aegypti nas cidades de Taguatinga, Guará e Núcleo Bandeirante apresentaram-se resistentes ao temefós, com mortalidade de larvas entre 54,1 e 63,4%. As populações do Gama, Planaltina e Sobradinho apresentaram alterações nos níveis de suscetibilidade (mortalidade de 83,6 a 92,8%). A população de Ceilândia foi a única suscetível, com 98% de mortalidade. Em 2001, todas as populações testadas mostraram-se resistentes (44,4 a 66,4% de mortalidade). Nenhuma correlação significativa foi encontrada entre a suscetibilidade das populações e a distância entre essas cidades ou a quantidade de inseticida aplicado nos anos anteriores ao estudo. CONCLUSÕES: Os níveis de suscetibilidade do Ae. aegypti ao temefós vêm se alterando no Distrito Federal. É essencial a continuidade de programas de monitoramento da resistência desse vetor aos inseticidas para se garantir a eficiência dos programas de controle e a proteção da saúde humana.<br>OBJECTIVE: To study the susceptibility status of Aedes aegypti to the organophosphate insecticide temephos. METHODS: Samples of Ae. aegypti larvae were obtained, using ovitraps, from eight cities of the Federal District, central Brazil, in 2000 and 2001. Larvae were submitted to the diagnostic dose of 0.012 mg/l temephos, as recommended by standard World Health Organization methodology. Field populations were tested in parallel with reference strains Rockefeller and DIVAL, from the Environmental Surveillance Directory (DIVAL) insectary. The concentration and purity of temephos solutions were verified by gas chromatography. Correlation calculations were performed using StatView - SAS Institute Inc., version 5. Student's t test was used for detecting differences in susceptibility, with significance levels of alpha=0.05. RESULTS: In 2000, Ae. aegypti larvae populations from Taguatinga, Guará, and Núcleo Bandeirante showed resistance to temephos, with mortality ranging from 54.1 to 63.4%. The populations from Gama, Planaltina, and Sobradinho showed altered levels of susceptibility (mortality ranging from 83.6 to 92.8%). The population from Ceilândia was the only susceptible one, with 98% mortality. In 2001, all populations tested were resistant (44.4 to 66.4% mortality). No significant correlation was found between the susceptibility of populations and the distance between the cities of origin, or the amount of insecticide applied in the years preceding the study. CONCLUSIONS: Ae. aegypti susceptibility to temephos is changing in the Federal District. It is essential to continue monitoring the resistance of this vector to insecticides in order to ensure the efficiency of programs aimed at vector control and at the protection of human health

Infection Prevention and Control Capacity Building During 2018–2019 Democratic Republic of Congo Ebola Virus Disease Outbreak

Background: As of July 1, 2019, ~18% of all cases in the Ebola virus disease (EVD) outbreak in the Democratic Republic of Congo (DRC) were healthcare-associated (ie, nosocomial) infections (HAIs) and healthcare worker (HCW) infections. Although progress has been achieved, gaps remained in infection prevention and control (IPC), specifically, a need to reinforce standardized, evidence-based IPC practices to effectively address HAIs. The Ministry of Health (MOH), in collaboration with partners, developed an IPC tool kit consisting of &gt;70 documents (ie, terms of reference, standard operating procedures, training modules, etc) to improve HCW IPC knowledge and practices at healthcare facilities among staff. The tool kit incorporated international IPC standards, DRC-specific experiences, and best practices. Thus, it serves as a technical and operational package, covering general guidance (standard precautions) and EVD specific issues. Methods: A decentralized rollout approach was used to disseminate the tool kit content at the various health-system levels over several months. Initially, national-level training of trainers was held, followed by subnational-level training of IPC supervisors and key IPC implementers, and lastly, training of healthcare facility (HCF) IPC focal persons. The 5-day training adhered to the MOH standard of 60% theory and 40% practice. Participants completed evaluations before and after training; changes in knowledge between the pre- and posttraining tests were analyzed and the results of the statistical tests were reported (P &lt; .05 was considered statistically significant). Results: In total, 294 IPC supervisors were trained across 7 subnational commissions. Data were analyzed for 138 participants. Participants were 60.9% IPC supervisors, 8% WASH supervisors, and 31% others. MOH representation was 52.9% The average results before the test were 66% (19.8 of 30), the average posttest results were 72% (21.6 of 30)—a significant improvement. The worst-performing pretest IPC domain was IPC approach, and facility closure was the worst performing for posttest. As of November 11, 15.7% of all cases were HAIs. Conclusions: The IPC training program initiated during an outbreak can increase knowledge and potentially improve practices and confidence. An association with the downward HAI trend is yet to be validated. The MOH anticipates that this tool kit will be the go-to resource for future Ebola outbreaks and that it will be incorporated into the preservice medical curriculum to ensure a resilient heath system.Funding: NoneDisclosures: None</jats:p