61 research outputs found
13 Mannose binding lectin gene as a modifier of cystic fibrosis phenotype in Argentinian pediatric patients
How to tell a gravastar from a black hole
Gravastars have been recently proposed as potential alternatives to explain
the astrophysical phenomenology traditionally associated to black holes,
raising the question of whether the two objects can be distinguished at all.
Leaving aside the debate about the processes that would lead to the formation
of a gravastar and the astronomical evidence in their support, we here address
two basic questions: Is a gravastar stable against generic perturbations? If
stable, can an observer distinguish it from a black hole of the same mass? To
answer these questions we construct a general class of gravastars and determine
the conditions they must satisfy in order to exist as equilibrium solutions of
the Einstein equations. For such models we perform a systematic stability
analysis against axial-perturbations, computing the real and imaginary parts of
the eigenfrequencies. Overall, we find that gravastars are stable to axial
perturbations, but also that their quasi-normal modes differ from those of a
black hole of the same mass and thus can be used to discern, beyond dispute, a
gravastar from a black hole.Comment: 16 pages, 13 figures, minor improvemen
Thermal ionization of excitons in V-shaped quantum wires
The exciton-to-free-carrier transition in GaAs and In_xGa_{1-x}As V-shaped quantum wires is revealed by means of temperature-dependent magnetoluminescence experiments. The experimental results are in excellent agreement with the diamagnetic shift obtained from a solution of the full two-dimensional Schrödinger equation for electrons and holes including magnetic-field and excitonic effects. In the GaAs wires, the exciton-to-free-carrier transition is found to occur at temperature consistent with the exciton binding energies. In the In_xGa_{1-x}As wires the diamagnetic shift of the luminescence is found to be free-carrier-like, independent of temperature, due to the weakening of the exciton binding energy induced by the internal piezoelectric field
Field propagation in de Sitter black holes
We present an exhaustive analysis of scalar, electromagnetic and
gravitational perturbations in the background of Schwarzchild-de Sitter and
Reissner-Nordstrom-de Sitter spacetimes. The field propagation is considered by
means of a semi-analytical (WKB) approach and two numerical schemes: the
characteristic and general initial value integrations. The results are compared
near the extreme cosmological constant regime, where analytical results are
presented. A unifying picture is established for the dynamics of different spin
fields.Comment: 15 pages, 16 figures, published versio
Application of kernel functions for accurate similarity search in large chemical databases
Background
Similaritysearch in chemical structure databases is an important problem with many applications in chemical genomics, drug design, and efficient chemical probe screening among others. It is widely believed that structure based methods provide an efficient way to do the query. Recently various graph kernel functions have been designed to capture the intrinsic similarity of graphs. Though successful in constructing accurate predictive and classification models, graph kernel functions can not be applied to large chemical compound database due to the high computational complexity and the difficulties in indexing similarity search for large databases.
Results
To bridge graph kernel function and similarity search in chemical databases, we applied a novel kernel-based similarity measurement, developed in our team, to measure similarity of graph represented chemicals. In our method, we utilize a hash table to support new graph kernel function definition, efficient storage and fast search. We have applied our method, named G-hash, to large chemical databases. Our results show that the G-hash method achieves state-of-the-art performance for k-nearest neighbor (k-NN) classification. Moreover, the similarity measurement and the index structure is scalable to large chemical databases with smaller indexing size, and faster query processing time as compared to state-of-the-art indexing methods such as Daylight fingerprints, C-tree and GraphGrep.
Conclusions
Efficient similarity query processing method for large chemical databases is challenging since we need to balance running time efficiency and similarity search accuracy. Our previous similarity search method, G-hash, provides a new way to perform similarity search in chemical databases. Experimental study validates the utility of G-hash in chemical databases
Involvement of GTA protein NC2β in Neuroblastoma pathogenesis suggests that it physiologically participates in the regulation of cell proliferation
<p>Abstract</p> <p>Background</p> <p>The General Transcription Apparatus (GTA) comprises more than one hundred proteins, including RNA Polymerases, GTFs, TAFs, Mediator, and cofactors such as heterodimeric NC2. This complexity contrasts with the simple mechanical role that these proteins are believed to perform and suggests a still uncharacterized participation to important biological functions, such as the control of cell proliferation.</p> <p>Results</p> <p>To verify our hypothesis, we analyzed the involvement in Neuroblastoma (NB) pathogenesis of GTA genes localized at 1p, one of NB critical regions: through RT-PCR of fifty eight NB biopsies, we demonstrated the statistically significant reduction of the mRNA for NC2β (localized at 1p22.1) in 74% of samples (p = 0.0039). Transcripts from TAF13 and TAF12 (mapping at 1p13.3 and 1p35.3, respectively) were also reduced, whereas we didn't detect any quantitative alteration of the mRNAs from GTF2B and NC2α (localized at 1p22-p21 and 11q13.3, respectively). We confirmed these data by comparing tumour and constitutional DNA: most NB samples with diminished levels of NC2β mRNA had also genomic deletions at the corresponding locus.</p> <p>Conclusion</p> <p>Our data show that NC2β is specifically involved in NB pathogenesis and may be considered a new NB biomarker: accordingly, we suggest that NC2β, and possibly other GTA members, are physiologically involved in the control of cell proliferation. Finally, our studies unearth complex selective mechanisms within NB cells.</p
The Index-Based Subgraph Matching Algorithm (ISMA): Fast Subgraph Enumeration in Large Networks Using Optimized Search Trees
Subgraph matching algorithms are designed to find all instances of predefined subgraphs in a large graph or network and play an important role in the discovery and analysis of so-called network motifs, subgraph patterns which occur more often than expected by chance. We present the index-based subgraph matching algorithm (ISMA), a novel tree-based algorithm. ISMA realizes a speedup compared to existing algorithms by carefully selecting the order in which the nodes of a query subgraph are investigated. In order to achieve this, we developed a number of data structures and maximally exploited symmetry characteristics of the subgraph. We compared ISMA to a naive recursive tree-based algorithm and to a number of well-known subgraph matching algorithms. Our algorithm outperforms the other algorithms, especially on large networks and with large query subgraphs. An implementation of ISMA in Java is freely available at http://sourceforge.net/projects/isma
The Italian arm of the PREPARE study: an international project to evaluate and license a maternal vaccine against group B streptococcus.
BACKGROUND: Group B streptococcus (GBS) is a leading cause of sepsis, pneumonia and meningitis in infants, with long term neurodevelopmental sequelae. GBS may be associated with poor pregnancy outcomes, including spontaneous abortion, stillbirth and preterm birth. Intrapartum antibiotic prophylaxis (IAP) is currently the only way to prevent early-onset disease (presenting at 0 to 6 days of life), although it has no impact on the disease presenting over 6 days of life and its implementation is challenging in resource poor countries. A maternal vaccine against GBS could reduce all GBS manifestations as well as improve pregnancy outcomes, even in low-income countries. MAIN BODY: The term "PREPARE" designates an international project aimed at developing a maternal vaccination platform to test vaccines against neonatal GBS infections by maternal immunization. It is a non-profit, multi-center, interventional and experimental study (promoted by the St George University of London. [UK]) with the aim of developing a maternal vaccination platform, determining pregnancy outcomes, and defining the extent of GBS infections in children and mothers in Africa. PREPARE also aims to estimate the protective serocorrelates against the main GBS serotypes that cause diseases in Europe and Africa and to conduct two trials on candidate GBS vaccines. PREPARE consists of 6 work packages. In four European countries (Italy, UK, Netherlands, France) the recruitment of cases and controls will start in 2020 and will end in 2022. The Italian PREPARE network includes 41 centers. The Italian network aims to collect: GBS isolates from infants with invasive disease, maternal and neonatal sera (cases); cord sera and GBS strains from colonized mothers whose infants do not develop GBS infection (controls). SHORT CONCLUSION: PREPARE will contribute information on protective serocorrelates against the main GBS serotypes that cause diseases in Europe and Africa. The vaccine that will be tested by the PREPARE study could be an effective strategy to prevent GBS disease
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