Convergence of Proximal Point and Extragradient-Based Methods Beyond Monotonicity: the Case of Negative Comonotonicity

Algorithms for min-max optimization and variational inequalities are often studied under monotonicity assumptions. Motivated by non-monotone machine learning applications, we follow the line of works [Diakonikolas et al., 2021, Lee and Kim, 2021, Pethick et al., 2022, B\"ohm, 2022] aiming at going beyond monotonicity by considering the weaker negative comonotonicity assumption. In particular, we provide tight complexity analyses for the Proximal Point, Extragradient, and Optimistic Gradient methods in this setup, closing some questions on their working guarantees beyond monotonicity.Comment: 34 pages, 2 figures. Changes in V2: missing reference was added. Code: https://github.com/eduardgorbunov/Proximal_Point_and_Extragradient_based_methods_negative_comonotonicit

Reactive Oxygen in Abiotic Stress Perception-From Genes to Proteins

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Ice-Templating of Alumina Suspensions: Effect of Supercooling and Crystal Growth During the Initial Freezing Regime

International audienceWe investigate the ice-templating behavior of alumina suspensions by in situ X-ray radiography and tomography. We focus herein on the formation and structure of the transitional zone, occurring during the initial instants of freezing. For many applications, this zone is undesirable as the resulting porosity is heterogeneous in size, morphology, and orientation. We investigate the influence of the composition of alumina suspensions on the formation of the transitional zone. Alumina particles are dispersed by three different dispersants, in various quantities, or by hydrochloric acid. We show that the dimensions and the morphology of the transitional zone are determined by the growth of large dendritic ice-crystals growing in a supercooled state much faster than the cellular freezing front. When the freezing temperature decreases, the degree of supercooling increases. This results in an initial faster freezing front velocity and increase in the dimensions of the transitional zone. It is therefore possible to adjust the dimensions of the transitional zone by changing the composition of alumina suspensions. The counter-ion Na+ has the most dramatic effect on the freezing temperature of suspensions, yielding a predominance of cellular ice crystals instead of the usual lamellar crystals

A key role for apoplastic H2O2 in Norway spruce phenolic metabolism

Apoplastic events such as monolignol oxidation and lignin polymerization are difficult to study in intact trees. To investigate the role of apoplastic hydrogen peroxide (H2O2) in gymnosperm phenolic metabolism, an extracellular lignin-forming cell culture of Norway spruce (Picea abies) was used as a research model. Scavenging of apoplastic H2O2 by potassium iodide repressed lignin formation, in line with peroxidases activating monolignols for lignin polymerization. Time-course analyses coupled to candidate substrate-product pair network propagation revealed differential accumulation of low-molecular-weight phenolics, including (glycosylated) oligolignols, (glycosylated) flavonoids, and proanthocyanidins, in lignin-forming and H2O2-scavenging cultures and supported that monolignols are oxidatively coupled not only in the cell wall but also in the cytoplasm, where they are coupled to other monolignols and proanthocyanidins. Dilignol glycoconjugates with reduced structures were found in the culture medium, suggesting that cells are able to transport glycosylated dilignols to the apoplast. Transcriptomic analyses revealed that scavenging of apoplastic H2O2 resulted in remodulation of the transcriptome, with reduced carbon flux into the shikimate pathway propagating down to monolignol biosynthesis. Aggregated coexpression network analysis identified candidate enzymes and transcription factors for monolignol oxidation and apoplastic H2O2 production in addition to potential H2O2 receptors. The results presented indicate that the redox state of the apoplast has a profound influence on cellular metabolism

L’ÉPICÉA WALLON : ÉTAT DE LA RESSOURCE EN 2021

La surface de la pessière wallonne a diminué de 30 % entre 1980 et 2010. L’exploitation d’un grand nombre de peuplements arrivés à maturité ces deux dernières décennies et un faible taux de replantation expliquent cette tendance. La crise des scolytes que nous avons connue ces dernières années, si elle a accentué la pression sur la ressource en épicéa, n'a pas modifié significativement la tendance. L’objet de cet article est de présenter une image aussi fidèle et actualisée que possible de la ressource en épicéa au niveau de la Wallonie (surfaces, volumes récoltés, volumes sur pied, classes de circonférence, types de propriétaire, niveau d’aptitude stationnelle). Les résultats présentés proviennent du croisement de plusieurs travaux de recherches développés par l’équipe de Gembloux Agro-Bio Tech (ULiège)

Growth, Productivity, Biomass and Carbon Stock in Eucalyptus saligna and Grevillea robusta Plantations in North Kivu, Democratic Republic of the Congo

peer reviewedInitiated by the World Wildlife Fund (WWF) more than a decade ago in North Kivu, sin- gle-species plantations of Eucalyptus saligna and Grevillea robusta constitute, with other village plantations, the current legal source of wood-energy for the communities bordering the Virunga National Park (PNVi). This study assesses the growth and productivity of these plantations in two sites with different soil and climatic conditions to predict their production over time. The study also assesses the carbon stock and long-term CO2 fixation in the biomass of the studied plantations to deduce their contribution to climate change mitigation. Non-destructive inventories were carried out during three consecutive years in 20 E. saligna and 12 G. robusta plantations in Sake and Kirumba. Analysis of the data revealed that both species have similar diametric growth while height growth and productivity were significantly higher in the E. saligna plantations. The productivity of E. saligna was also higher in Kirumba than in Sake, while that of G. robusta was higher in Sake than in Kirumba. The differences observed were mainly related to species, silviculture, altitude and concentration of bioavailable elements in the soils. The analysis of productivity evolution over time allowed us to determine optimal rotations at 8 and 12 years, respectively, for E. saligna and G. robusta plantations. The relationships between biomass or carbon stock and tree diameter were not different between the studied species but were significantly different at the stand level. If silviculture was standardized and plantations carefully monitored, carbon stock and long-term CO2 fixation would be higher in G. robusta plantations than in E. saligna plantations. These results indicate that while for productivity reasons E. saligna is the favoured species in wood-energy plantations to quickly meet the demand of the growing and disadvantaged population living in the vicinity of PNVi, carefully monitored G. robusta plantations could be more interesting in terms of carbon credits. To simultaneously optimise wood-energy production and carbon storage in the plantations initiated in North Kivu, E. saligna and G. robusta should be planted in mixture. In addition, species and site characteristics adapted silvicultural management practices must be applied to these plantations, which are very important for the region, its population and its park. Finally, the economic profitability as well as the sustainability of the plantations should be assessed in the longer term in North Kivu

Regulation of PaRBOH1-mediated ROS production in Norway spruce by Ca2+ binding and phosphorylation

Plant respiratory burst oxidase homologs (RBOHs) are plasma membrane-localized NADPH oxidases that generate superoxide anion radicals, which then dismutate to H2O2, into the apoplast using cytoplasmic NADPH as an electron donor. PaRBOH1 is the most highly expressed RBOH gene in developing xylem as well as in a lignin-forming cell culture of Norway spruce (Picea abies L. Karst.). Since no previous information about regulation of gymnosperm RBOHs exist, our aim was to resolve how PaRBOH1 is regulated with a focus on phosphorylation. The N-terminal part of PaRBOH1 was found to contain several putative phosphorylation sites and a four-times repeated motif with similarities to the Botrytis-induced kinase 1 target site in Arabidopsis AtRBOHD. Phosphorylation was indicated for six of the sites in in vitro kinase assays using 15 amino-acid-long peptides for each of the predicted phosphotarget site in the presence of protein extracts of developing xylem. Serine and threonine residues showing positive response in the peptide assays were individually mutated to alanine (kinase-inactive) or to aspartate (phosphomimic), and the wild type PaRBOH1 and the mutated constructs transfected to human kidney embryogenic (HEK293T) cells with a low endogenous level of extracellular ROS production. ROS-producing assays with HEK cells showed that Ca2+ and phosphorylation synergistically activate the enzyme and identified several serine and threonine residues that are likely to be phosphorylated including a novel phosphorylation site not characterized in other plant species. These were further investigated with a phosphoproteomic study. Results of Norway spruce, the first gymnosperm species studied in relation to RBOH regulation, show that regulation of RBOH activity is conserved among seed plants

Regulation of PaRBOH1-mediated ROS production in Norway spruce by Ca2+ binding and phosphorylation

Plant respiratory burst oxidase homologs (RBOHs) are plasma membrane-localized NADPH oxidases that generate superoxide anion radicals, which then dismutate to H2O2, into the apoplast using cytoplasmic NADPH as an electron donor. PaRBOH1 is the most highly expressed RBOH gene in developing xylem as well as in a lignin-forming cell culture of Norway spruce (Picea abies L. Karst.). Since no previous information about regulation of gymnosperm RBOHs exist, our aim was to resolve how PaRBOH1 is regulated with a focus on phosphorylation. The N-terminal part of PaRBOH1 was found to contain several putative phosphorylation sites and a four-times repeated motif with similarities to the Botrytis-induced kinase 1 target site in Arabidopsis AtRBOHD. Phosphorylation was indicated for six of the sites in in vitro kinase assays using 15 amino-acid-long peptides for each of the predicted phosphotarget site in the presence of protein extracts of developing xylem. Serine and threonine residues showing positive response in the peptide assays were individually mutated to alanine (kinase-inactive) or to aspartate (phosphomimic), and the wild type PaRBOH1 and the mutated constructs transfected to human kidney embryogenic (HEK293T) cells with a low endogenous level of extracellular ROS production. ROS-producing assays with HEK cells showed that Ca2+ and phosphorylation synergistically activate the enzyme and identified several serine and threonine residues that are likely to be phosphorylated including a novel phosphorylation site not characterized in other plant species. These were further investigated with a phosphoproteomic study. Results of Norway spruce, the first gymnosperm species studied in relation to RBOH regulation, show that regulation of RBOH activity is conserved among seed plants.Peer reviewe