Using JGOFS in situ and ocean color data to compare biogeochemical models and estimate their parameters in the subtropical North Atlantic Ocean

How well do biogeochemical data sets serve to decide among models and model parameter values? Data at 21N, 31W from the French JGOFS EUMELI cruises and the SeaWiFS ocean color sensor were used to estimate parameters for three very different models of biological nitrogen flux in a water column. The three models are (1) an NPZD (Nutrients, Phytoplankton, Zooplankton and Detritus) model (Oschlies et al., 2000), (2) a seven-component model with two pools of dissolved organic matter and detritus with different remineralization and sinking rates (Dadou et al., 2001) and (3) a model of nutrients and phytoplankton including aggregates (Kriest and Evans, 1999). Parameters of the three models are estimated using the same sets of data within the same one-dimensional physical framework. A combination of local and nonlocal optimization methods is used. It is not easy to decide among candidate models based on their fit to the data. Parameters that mean the same thing in the three models, like the half-saturation concentration for nitrate uptake, were estimated at not very different values in different models. The model with dissolved organic matter, based on its primary production and sediment flux data time evolutions, seems to exhibit the more reasonable annual behavior. Large seasonal changes in deep nitrate data suggest an unexpected role of lateral advection and may vitiate the 1-D approach even at the EUMELI oligotrophic site. The small number of sediment trap measurements are very powerful for constraining the biological nitrogen. Ocean color data did not add extra constraining power

Targeting Pattern Recognition Receptors (PRR) for Vaccine Adjuvantation: From Synthetic PRR Agonists to the Potential of Defective Interfering Particles of Viruses.

Modern vaccinology has increasingly focused on non-living vaccines, which are more stable than live-attenuated vaccines but often show limited immunogenicity. Immunostimulatory substances, known as adjuvants, are traditionally used to increase the magnitude of protective adaptive immunity in response to a pathogen-associated antigen. Recently developed adjuvants often include substances that stimulate pattern recognition receptors (PRRs), essential components of innate immunity required for the activation of antigen-presenting cells (APCs), which serve as a bridge between innate and adaptive immunity. Nearly all PRRs are potential targets for adjuvants. Given the recent success of toll-like receptor (TLR) agonists in vaccine development, molecules with similar, but additional, immunostimulatory activity, such as defective interfering particles (DIPs) of viruses, represent attractive candidates for vaccine adjuvants. This review outlines some of the recent advances in vaccine development related to the use of TLR agonists, summarizes the current knowledge regarding DIP immunogenicity, and discusses the potential applications of DIPs in vaccine adjuvantation

Elastic electron-deuteron scattering in chiral effective field theory

We calculate elastic electron-deuteron scattering in a chiral effective field theory approach for few-nucleon systems based on a modified Weinberg power counting. We construct the current operators and the deuteron wave function at next-to-leading (NLO) and next-to-next-to-leading (NNLO) order simultaneously within a projection formalism. The leading order comprises the impulse approximation of photons coupling to point-like nucleons with an anomalous magnetic moment. At NLO, we include renormalizations of the single nucleon operators. To this order, no unknown parameters enter. At NNLO, one four-nucleon-photon operator appears. Its strength can be determined from the deuteron magnetic moment. We obtain not only a satisfactory description of the deuteron structure functions and form factors measured in electron-deuteron scattering but also find a good convergence for these observables.Comment: 13 pp, elsart.cls, 4 figs, extended version, includes NNLO corrections and more detailed discussion

Comparison of Relativistic Nucleon-Nucleon Interactions

We investigate the difference between those relativistic models based on interpreting a realistic nucleon-nucleon interaction as a perturbation of the square of a relativistic mass operator and those models that use the method of Kamada and Gl\"ockle to construct an equivalent interaction to add to the relativistic mass operator. Although both models reproduce the phase shifts and binding energy of the corresponding non-relativistic model, they are not scattering equivalent. The example of elastic electron-deuteron scattering in the one-photon-exchange approximation is used to study the sensitivity of three-body observables to these choices. Our conclusion is that the differences in the predictions of the two models can be understood in terms of the different ways in which the relativistic and non-relativistic $S$-matrices are related. We argue that the mass squared method is consistent with conventional procedures used to fit the Lorentz-invariant cross section as a function of the laboratory energy.Comment: Revtex 13 pages, 5 figures, corrected some typo

Influence of Rossby waves on primary production from a coupled physical-biogeochemical model in the North Atlantic Ocean

Rossby waves appear to have a clear signature on surface chlorophyll concentrations which can be explained by a combination of vertical and horizontal mechanisms. In this study, we investigate the role of the different physical processes in the north Atlantic to explain the surface chlorophyll signatures and the consequences on primary production, using a 3-D coupled physical/biogeochemical model for the year 1998. <br><br> The analysis at 20 given latitudes, mainly located in the subtropical gyre, where Rossby waves are strongly correlated with a surface chlorophyll signature, shows the important contribution of horizontal advection and of vertical advection and diffusion of inorganic dissolved nitrogen. The main control mechanism differs according to the biogeochemical background conditions of the area. <br><br> The surface chlorophyll anomalies, induced by these physical mechanisms, have an impact on primary production. We estimate that Rossby waves induce, locally in space and time, increases (generally associated with the chlorophyll wave crest) and decreases (generally associated with the chlorophyll wave trough) in primary production, ~±20% of the estimated background primary production. This symmetrical situation suggests a net weak effect of Rossby waves on primary production

Intravital Imaging of Adoptive T-Cell Morphology, Mobility and Trafficking Following Immune Checkpoint Inhibition in a Mouse Melanoma Model

Efficient T-cell targeting, infiltration and activation within tumors is crucial for successful adoptive T-cell therapy. Intravital microscopy is a powerful tool for the visualization of T-cell behavior within tumors, as well as spatial and temporal heterogeneity in response to immunotherapy. Here we describe an experimental approach for intravital imaging of adoptive T-cell morphology, mobility and trafficking in a skin-flap tumor model, following immune modulation with immune checkpoint inhibitors (ICIs) targeting PD-L1 and CTLA-4. A syngeneic model of ovalbumin and mCherry-expressing amelanotic mouse melanoma was used in conjunction with adoptively transferred OT-1+ cytotoxic T-cells expressing GFP to image antigen-specific live T-cell behavior within the tumor microenvironment. Dynamic image analysis of T-cell motility showed distinct CD8+ T-cell migration patterns and morpho-dynamics within different tumor compartments in response to ICIs: this approach was used to cluster T-cell behavior into four groups based on velocity and meandering index. The results showed that most T-cells within the tumor periphery demonstrated Lévy-like trajectories, consistent with tumor cell searching strategies. T-cells adjacent to tumor cells had reduced velocity and appeared to probe the local environment, consistent with cell-cell interactions. An increased number of T-cells were detected following treatment, traveling at lower mean velocities than controls, and demonstrating reduced displacement consistent with target engagement. Histogram-based analysis of immunofluorescent images from harvested tumors showed that in the ICI-treated mice there was a higher density of CD31+ vessels compared to untreated controls and a greater infiltration of T-cells towards the tumor core, consistent with increased cellular trafficking post-treatment

Nitrogen transfers off Walvis Bay: a 3-D coupled physical/biogeochemical modeling approach in the Namibian upwelling system

Eastern boundary upwelling systems (EBUS) are regions of high primary production often associated with oxygen minimum zones (OMZs). They represent key regions for the oceanic nitrogen (N) cycle. By exporting organic matter (OM) and nutrients produced in the coastal region to the open ocean, EBUS can play an important role in sustaining primary production in subtropical gyres. However, losses of fixed inorganic N through denitrification and anammox processes take place in oxygen depleted environments such as EBUS, and can potentially mitigate the role of these regions as a source of N to the open ocean. EBUS can also represent a considerable source of nitrous oxide (N2O) to the atmosphere, affecting the atmospheric budget of N2O. In this paper a 3-D coupled physical/biogeochemical model (ROMS/BioEBUS) is used to investigate the N budget in the Namibian upwelling system. The main processes linked to EBUS and associated OMZs are taken into account. The study focuses on the northern part of the Benguela upwelling system (BUS), especially the Walvis Bay area (between 22° S and 24° S) where the OMZ is well developed. Fluxes of N off the Walvis Bay area are estimated in order to understand and quantify (1) the total N offshore export from the upwelling area, representing a possible N source that sustains primary production in the South Atlantic subtropical gyre; (2) export production and subsequent losses of fixed N via denitrification and anammox under suboxic conditions (O2 < 25 mmol O2 m−3); and (3) the N2O emission to the atmosphere in the upwelling area. In the mixed layer, the total N offshore export is estimated as 8.5 ± 3.9 × 1010 mol N yr−1 at 10° E off the Walvis Bay area, with a mesoscale contribution of 20%. Extrapolated to the whole BUS, the coastal N source for the subtropical gyre corresponds to 0.1 ± 0.04 mol N m−2 yr−1. This N flux represents a major source of N for the gyre compared with other N sources, and contributes 28% of the new primary production estimated for the South Atlantic subtropical gyre. Export production (16.9 ± 1.3 × 1010 mol N yr−1) helps to maintain an OMZ off Namibia in which coupled nitrification, denitrification and anammox processes lead to losses of fixed N and N2O production. However, neither N losses (0.04 ± 0.025 × 1010 mol N yr−1) nor N2O emissions (0.03 ± 0.002 × 1010 mol N yr−1) significantly impact the main N exports of the Walvis Bay area. The studied area does not significantly contribute to N2O emissions (0.5 to 2.7%) compared to the global coastal upwelling emissions. Locally produced N2O is mostly advected southward by the poleward undercurrent

Generalized parton distributions in the deuteron

We introduce generalized quark and gluon distributions in the deuteron, which can be measured in exclusive processes like deeply virtual Compton scattering and meson electroproduction. We discuss the basic properties of these distributions, and point out how they probe the interplay of nucleon and parton degrees of freedom in the deuteron wave function

Measurement of the Analyzing Power in p⃗d→(pp)n\vec{p}d \to (pp)n \\with a Fast Forward 1S0^1S_0--Diproton

A measurement of the analyzing power $A_y$ of the $\vec{p}d \to (pp) + n$ reaction was carried out at beam energies of 0.5 and 0.8 GeV by detection of a fast forward proton pair of small excitation energy $E_{pp} < 3$ MeV. The kinematically complete experiment made use of the ANKE spectrometer at the internal beam of COSY and a deuterium cluster--jet target. For the first time the $S$--wave dominance in the fast diproton is experimentally demonstrated in this reaction. While at $T_p=0.8$ GeV the measured analyzing power $A_y$ vanishes, it reaches almost unity at $T_p=0.5$ GeV for neutrons scattered at $\theta_n^{c.m.}=167^\circ$. The results are compared with a model taking into account one--nucleon exchange, single scattering and $\Delta$ (1232) excitation in the intermediate state. The model describes fairly well the unpolarized cross section obtained earlier by us and the analyzing power at 0.8 GeV, it fails to reproduce the angular dependence of $A_y$ at 0.5 GeV.Comment: 4 pages, 4 figures, 1 tabl

The HPS electromagnetic calorimeter

The Heavy Photon Search experiment (HPS) is searching for a new gauge boson, the so-called “heavy photon.” Through its kinetic mixing with the Standard Model photon, this particle could decay into an electron-positron pair. It would then be detectable as a narrow peak in the invariant mass spectrum of such pairs, or, depending on its lifetime, by a decay downstream of the production target. The HPS experiment is installed in Hall-B of Jefferson Lab. This article presents the design and performance of one of the two detectors of the experiment, the electromagnetic calorimeter, during the runs performed in 2015–2016. The calorimeter's main purpose is to provide a fast trigger and reduce the copious background from electromagnetic processes through matching with a tracking detector. The detector is a homogeneous calorimeter, made of 442 lead-tungstate (PbWO4) scintillating crystals, each read out by an avalanche photodiode coupled to a custom trans-impedance amplifier