A framework for the development of a global standardised marine taxon reference image database (SMarTaR-ID) to support image-based analyses

Video and image data are regularly used in the field of benthic ecology to document biodiversity. However, their use is subject to a number of challenges, principally the identification of taxa within the images without associated physical specimens. The challenge of applying traditional taxonomic keys to the identification of fauna from images has led to the development of personal, group, or institution level reference image catalogues of operational taxonomic units (OTUs) or morphospecies. Lack of standardisation among these reference catalogues has led to problems with observer bias and the inability to combine datasets across studies. In addition, lack of a common reference standard is stifling efforts in the application of artificial intelligence to taxon identification. Using the North Atlantic deep sea as a case study, we propose a database structure to facilitate standardisation of morphospecies image catalogues between research groups and support future use in multiple front-end applications. We also propose a framework for coordination of international efforts to develop reference guides for the identification of marine species from images. The proposed structure maps to the Darwin Core standard to allow integration with existing databases. We suggest a management framework where high-level taxonomic groups are curated by a regional team, consisting of both end users and taxonomic experts. We identify a mechanism by which overall quality of data within a common reference guide could be raised over the next decade. Finally, we discuss the role of a common reference standard in advancing marine ecology and supporting sustainable use of this ecosystem

Effect of habitat and landscape structure on waterbird abundance in wetlands of central Argentina

Determining the response of birds to local habitat characteristics and landscape structure is essential to understanding habitat selection and its consequences for the distribution of species. This study identified the influence of environmental factors as determinants of the waterbird assemblage composition in 39 wetlands in the Pampas of central Argentina. Multivariate analysis allowed the identification of environmental factors affecting the use of habitat by waterbird species, whose variable numbers were explained by local and landscape environmental factors. Interspecific variation in responses to changes in environmental factors shows that habitat selection occurs at a species-specific level, although species with similar ecological requirements tend to respond similarly to environmental heterogeneity. Plovers and flamingos were mostly associated with high salinity and the presence of a muddy shoreline and temporary ponds; ducks, herons and ibises were associated with vegetation abundance and decrease in salinity; piscivores and carnivorous species were associated with water depth. The small degree of overlap of habitat requirements between some species suggests a high level of specialization within waterbird assemblages. This knowledge can be used for the design of appropriate conservation and management strategies in central Argentina, where the alarming loss of wetlands requires management strategies that ensure the permanence of the greatest diversity of waterbirds.Fil: Brandolin, Pablo Germán. Universidad Nacional de Rio Cuarto. Facultad de Agronomia y Veterinaria. Departamento de Biología Agrícola. Cátedra de Botanica Sistematica; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba; ArgentinaFil: Blendinger, Pedro Gerardo. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad Nacional de Tucumán. Facultad de Ciencias Naturales e Instituto Miguel Lillo. Laboratorio de Investigaciones Ecológicas de las Yungas; Argentin

High contribution of Rhizaria (Radiolaria) to vertical export in the California Current Ecosystem revealed by DNA metabarcoding

International audiencePassive sinking of particulate organic matter (POM) is the main mechanism through which the biological pump transports surface primary production to the ocean interior. However, the contribution and variability of different biological sources to vertical export is not fully understood. Here, we use DNA metabarcoding of the 18S rRNA gene and particle interceptor traps (PITs) to characterize the taxonomic composition of particles sinking out of the photic layer in the California Current Ecosystem (CCE), a productive system with high export potential. The PITs included formalin-fixed and ‘live’ traps to investigate eukaryotic communities involved in the export and remineralization of sinking particles. Sequences affiliated with Radiolaria dominated the eukaryotic assemblage in fixed traps (90%), with Dinophyta and Metazoa making minor contributions. The prominence of Radiolaria decreased drastically in live traps, possibly due to selective consumption by copepods, heterotrophic nanoflagellates, and phaeodarians that were heavily enriched in these traps. These patterns were consistent across the water masses surveyed extending from the coast to offshore, despite major differences in productivity and trophic structure of the epipelagic plankton community. Our findings identify Radiolaria as major actors in export fluxes in the CCE