Spatial resolution and refractive index contrast of resonant photonic crystal surfaces for biosensing

By depositing a resolution test pattern on top of a Si3N4 photonic crystal resonant surface, we have measured the dependence of spatial resolution on refractive index contrast \Delta n. Our experimental results and finite-difference time-domain (FDTD) simulations at different refractive index contrasts show that the spatial resolution of our device reduces with reduced contrast, which is an important consideration in biosensing, where the contrast may be of order 10{-2} . We also compare 1-D and 2-D gratings, taking into account different incidence polarizations, leading to a better understanding of the excitation and propagation of the resonant modes in these structures, as well as how this contributes to the spatial resolution. At \Delta n = 0.077, we observe resolutions of 2 and 6 \mu\hbox{m} parallel to and perpendicular to the grooves of a 1-D grating, respectively, and show that for polarized illumination of a 2-D grating, resolution remains asymmetrical. Illumination of a 2-D grating at 45 ^{\circ} results in symmetric resolution. At very low index contrast, the resolution worsens dramatically, particularly for \Delta n\ <\ 0.01, where we observe a resolution exceeding 10 \mu\hbox{m} for our device. In addition, we measure a reduction in the resonance linewidth as the index contrast becomes lower, corresponding to a longer resonant mode propagation length in the structure and contributing to the change in spatial resolution

Euclidean Structure from N>=2 Parallel Circles: Theory and Algorithms

International audienceOur problem is that of recovering, in one view, the 2D Euclidean structure, induced by the projections of N parallel circles. This structure is a prerequisite for camera calibration and pose computation. Until now, no general method has been described for N > 2. The main contribution of this work is to state the problem in terms of a system of linear equations to solve.We give a closed-form solution as well as bundle adjustment-like refinements, increasing the technical applicability and numerical stability. Our theoretical approach generalizes and extends all those described in existing works for N = 2 in several respects, as we can treat simultaneously pairs of orthogonal lines and pairs of circles within a unified framework. The proposed algorithm may be easily implemented, using well-known numerical algorithms. Its performance is illustrated by simulations and experiments with real images

Automatic trinocular 3D reconstruction of coronary artery centerlines from rotational X-ray angiography

International audienceWe present a method for fully automatic 3D reconstruction of coronary artery centerlines using three X-ray angiogram projections from a single rotating monoplane acquisition. The reconstruction method consists of three steps: (1) filtering and segmenting the images using a multiscale analysis, (2) matching points in two of the segmented images using the information from the third image, and (3) reconstructing in 3D the matched points. This method needs good calibration of the system geometry and requires breatheld acquisitions. The final algorithm is formulated as an energy minimization problem that we solve using dynamic programming optimization. This method provides a fast and automatic way to compute 3D models of vessels centerlines. It has been applied to both phantoms, for validation purposes, and patient data sets

Age-Related Attenuation of Dominant Hand Superiority

The decline of motor performance of the human hand-arm system with age is well-documented. While dominant hand performance is superior to that of the non-dominant hand in young individuals, little is known of possible age-related changes in hand dominance. We investigated age-related alterations of hand dominance in 20 to 90 year old subjects. All subjects were unambiguously right-handed according to the Edinburgh Handedness Inventory. In Experiment 1, motor performance for aiming, postural tremor, precision of arm-hand movement, speed of arm-hand movement, and wrist-finger speed tasks were tested. In Experiment 2, accelerometer-sensors were used to obtain objective records of hand use in everyday activities

Interspecific and geographic variation in the diets of sympatric carnivores: dingoes/wild dogs and red foxes in south-eastern Australia

Dingoes/wild dogs (Canis dingo/familiaris) and red foxes (Vulpes vulpes) are widespread carnivores in southern Australia and are controlled to reduce predation on domestic livestock and native fauna. We used the occurrence of food items in 5875 dingo/wild dog scats and 11,569 fox scats to evaluate interspecific and geographic differences in the diets of these species within nine regions of Victoria, south-eastern Australia. The nine regions encompass a wide variety of ecosystems. Diet overlap between dingoes/wild dogs and foxes varied among regions, from low to near complete overlap. The diet of foxes was broader than dingoes/wild dogs in all but three regions, with the former usually containing more insects, reptiles and plant material. By contrast, dingoes/wild dogs more regularly consumed larger mammals, supporting the hypothesis that niche partitioning occurs on the basis of mammalian prey size. The key mammalian food items for dingoes/wild dogs across all regions were black wallaby (Wallabia bicolor), brushtail possum species (Trichosurus spp.), common wombat (Vombatus ursinus), sambar deer (Rusa unicolor), cattle (Bos taurus) and European rabbit (Oryctolagus cuniculus). The key mammalian food items for foxes across all regions were European rabbit, sheep (Ovis aries) and house mouse (Mus musculus). Foxes consumed 6.1 times the number of individuals of threatened Critical Weight Range native mammal species than did dingoes/wild dogs. The occurrence of intraguild predation was asymmetrical; dingoes/wild dogs consumed greater biomass of the smaller fox. The substantial geographic variation in diet indicates that dingoes/wild dogs and foxes alter their diet in accordance with changing food availability. We provide checklists of taxa recorded in the diets of dingoes/wild dogs and foxes as a resource for managers and researchers wishing to understand the potential impacts of policy and management decisions on dingoes/wild dogs, foxes and the food resources they interact with

iSAM2 : incremental smoothing and mapping using the Bayes tree

Author Posting. © The Author(s), 2011. This is the author's version of the work. It is posted here by permission of Sage for personal use, not for redistribution. The definitive version was published in International Journal of Robotics Research 31 (2012): 216-235, doi:10.1177/0278364911430419.We present a novel data structure, the Bayes tree, that provides an algorithmic foundation enabling a better understanding of existing graphical model inference algorithms and their connection to sparse matrix factorization methods. Similar to a clique tree, a Bayes tree encodes a factored probability density, but unlike the clique tree it is directed and maps more naturally to the square root information matrix of the simultaneous localization and mapping (SLAM) problem. In this paper, we highlight three insights provided by our new data structure. First, the Bayes tree provides a better understanding of the matrix factorization in terms of probability densities. Second, we show how the fairly abstract updates to a matrix factorization translate to a simple editing of the Bayes tree and its conditional densities. Third, we apply the Bayes tree to obtain a completely novel algorithm for sparse nonlinear incremental optimization, named iSAM2, which achieves improvements in efficiency through incremental variable re-ordering and fluid relinearization, eliminating the need for periodic batch steps. We analyze various properties of iSAM2 in detail, and show on a range of real and simulated datasets that our algorithm compares favorably with other recent mapping algorithms in both quality and efficiency.M. Kaess, H. Johannsson and J. Leonard were partially supported by ONR grants N00014-06-1-0043 and N00014-10-1-0936. F. Dellaert and R. Roberts were partially supported by NSF, award number 0713162, “RI: Inference in Large-Scale Graphical Models”. V. Ila has been partially supported by the Spanish MICINN under the Programa Nacional de Movilidad de Recursos Humanos de Investigación

Pareto optimality solution of the multi-objective photogrammetric resection-intersection problem

Reconstruction of architectural structures from photographs has recently experienced intensive efforts in computer vision research. This is achieved through the solution of nonlinear least squares (NLS) problems to obtain accurate structure and motion estimates. In Photogrammetry, NLS contribute to the determination of the 3-dimensional (3D) terrain models from the images taken from photographs. The traditional NLS approach for solving the resection-intersection problem based on implicit formulation on the one hand suffers from the lack of provision by which the involved variables can be weighted. On the other hand, incorporation of explicit formulation expresses the objectives to be minimized in different forms, thus resulting in different parametric values for the estimated parameters at non-zero residuals. Sometimes, these objectives may conflict in a Pareto sense, namely, a small change in the parameters results in the increase of one objective and a decrease of the other, as is often the case in multi-objective problems. Such is often the case with error-in-all-variable (EIV) models, e.g., in the resection-intersection problem where such change in the parameters could be caused by errors in both image and reference coordinates.This study proposes the Pareto optimal approach as a possible improvement to the solution of the resection-intersection problem, where it provides simultaneous estimation of the coordinates and orientation parameters of the cameras in a two or multistation camera system on the basis of a properly weighted multi-objective function. This objective represents the weighted sum of the square of the direct explicit differences of the measured and computed ground as well as the image coordinates. The effectiveness of the proposed method is demonstrated by two camera calibration problems, where the internal and external orientation parameters are estimated on the basis of the collinearity equations, employing the data of a Manhattan-type test field as well as the data of an outdoor, real case experiment. In addition, an architectural structural reconstruction of the Merton college court in Oxford (UK) via estimation of camera matrices is also presented. Although these two problems are different, where the first case considers the error reduction of the image and spatial coordinates, while the second case considers the precision of the space coordinates, the Pareto optimality can handle both problems in a general and flexible way

Perceptions and measurement of playtime physical activity in English primary school children: The influence of socioeconomic status

Children in areas of low socioeconomic status might face barriers to physical activity during school playtime in comparison to their high socioeconomic status counterparts. However, limited research within the area currently prevents evidence-based interventions from being targeted appropriately. This exploratory study aimed to assess and compare playtime physical activity levels and perceptions of physical activity in primary school children from two schools of different socioeconomic status. Fifty-three children wore an accelerometer during playtime for three school days while 33 children participated in single-sex focus groups to elicit their experiences of physical activity during playtime. Results revealed that children from the low socioeconomic status school spent more time in sedentary activities (P = 0.001) and spent less time in moderate and moderate to vigorous physical activity (P = 0.001) than children from the high socioeconomic status school. Despite some between-school similarities in their perceptions of physical activity, differences resonated in their reasons for taking part in physical activity, perceptions of the play environment and ideas to improve physical activity. These findings contribute to current research and provide in-depth information from active users of the play environment that could be useful to inform new interventions for schools of varying socioeconomic status