Genomic analysis reveals neutral and adaptive patterns that challenge the current management regime for East Atlantic cod Gadus morhua L

Challenging long‐held perceptions of fish management units can help to protect vulnerable stocks. When a fishery consisting of multiple genetic stocks is managed as a single unit, overexploitation and depletion of minor genetic units can occur. Atlantic cod (Gadus morhua) is an economically and ecologically important marine species across the North Atlantic. The application of new genomic resources, including SNP arrays, allows us to detect and explore novel structure within specific cod management units. In Norwegian waters, coastal cod (i.e. those not undertaking extensive migrations) are divided into two arbitrary management units defined by ICES: one between 62° and 70°N (Norwegian coastal cod; NCC) and one between 58° and 62°N (Norwegian coastal south; NCS). Together, these capture a fishery area of >25,000 km2 containing many spawning grounds. To assess whether these geographic units correctly represent genetic stocks, we analysed spawning cod of NCC and NCS for more than 8,000 SNPs along with samples of Russian White Sea cod, north‐east Arctic cod (NEAC: the largest Atlantic stock), and outgroup samples representing the Irish and Faroe Sea's. Our analyses revealed large differences in spatial patterns of genetic differentiation across the genome and revealed a complex biological structure within NCC and NCS. Haplotype maps from four chromosome sets show regional specific SNP indicating a complex genetic structure. The current management plan dividing the coastal cod into only two management units does not accurately reflect the genetic units and needs to be revised. Coastal cod in Norway, while highly heterogenous, is also genetically distinct from neighbouring stocks in the north (NEAC), west (Faroe Island) and the south. The White Sea cod are highly divergent from other cod, possibly yielding support to the earlier notion of subspecies rank.publishedVersio

Impact of pulsed direct current on embryos, larvae, and young juveniles of Atlantic cod and its implications for electrotrawling of brown shrimp

The application of electrical pulses in fishing gear is considered a promising option to increase the sustainability of demersal trawl fisheries. In the electrotrawl fishery for brown shrimp Crangon crangon, an electrical field selectively induces a startle response in the shrimp. Other benthic organisms remain mainly on the seafloor and escape underneath a hovering trawl. Previous experiments have indicated that this pulse has no short-term major harmful effects on adult fish and invertebrates. However, the impact on young marine life stages is still unknown. Because brown shrimp are caught in shallow coastal zones and estuaries, which serve as important nurseries or spawning areas for a wide range of marine species, electrotrawling on these grounds could harm embryos, larvae, and juveniles. We carried out experiments with different developmental stages of Atlantic Cod Gadus morhua, which are considered vulnerable to electrical pulses. Three embryonic stages, four larval stages, and one juvenile stage of Atlantic Cod were exposed to a homogeneous electrical field of 150 V-peak/m for 5 s, mimicking a worst-case scenario. We detected no significant differences in embryo mortality rate between control and exposed groups. However, for the embryonic stage exposed at 18 d postfertilization, the initial hatching rate was lower. Larvae that were exposed at 2 and 26 d posthatch exhibited higher mortality rates than the corresponding nonexposed control groups. In the other larval and juvenile stages, no short-term impact of exposure on survival was observed. Morphometric analysis of larvae and juveniles revealed no differences in measurements or deformations of the yolk, notochord, eye, or head. Although exposure to a worst-case electrical field did not impact survival or development for six of the eight young life stages of Atlantic Cod, the observed delayed hatching rate and decreased survival for larvae might indicate an impact of electric pulses and warrant further research

Long-term change in a behavioural trait: truncated spawning distribution and demography in Northeast Arctic cod

Harvesting may be a potent driver of demographic change and contemporary evolution, which both may have great impacts on animal populations. Research has focused on changes in phenotypic traits that are easily quantifiable and for which time series exist, such as size, age, sex, or gonad size, whereas potential changes in behavioural traits have been under-studied. Here, we analyse potential drivers of long-term changes in a behavioural trait for the Northeast Arctic stock of Atlantic cod Gadus morhua, namely choice of spawning location. For 104 years (1866–1969), commercial catches were recorded annually and reported by county along the Norwegian coast. During this time period, spawning ground distribution has fluctuated with a trend towards more northerly spawning. Spawning location is analysed against a suite of explanatory factors including climate, fishing pressure, density dependence, and demography. We find that demography (age or age at maturation) had the highest explanatory power for variation in spawning location, while climate had a limited effect below statistical significance. As to potential mechanisms, some effects of climate may act through demography, and explanatory variables for demography may also have absorbed direct evolutionary change in migration distance for which proxies were unavailable. Despite these caveats, we argue that fishing mortality, either through demographic or evolutionary change, has served as an effective driver for changing spawning locations in cod, and that additional explanatory factors related to climate add no significant information

Thermal dynamics of ovarian maturation in Atlantic cod (Gadus Morhua)

The timing and success of spawning in marine fish are of fundamental importance to population persistence and distribution and, for commercial species, sustainability. Their physiological processes of reproduction are regulated, in part, by water temperature, and therefore changes in marine climate may have dramatic effects on spawning performance. Using adult Atlantic cod (Gadus morhua) as a case study, we examined the links between water temperature, body size, vitellogenesis, and spawning time by conducting extensive laboratory and field studies. Our experiments documented that vitellogenesis generally starts at autumnal equinox and that oocyte growth and investment are greater in cod held at warmer temperatures. Furthermore, spawning occurred earlier when oocyte growth was more rapid. Large females spawned earlier than smaller females at warmer temperatures, but this effect vanished at colder temperatures. The experimental results were confirmed by measurements of oocyte growth collected from wild-caught cod in northern (Barents Sea) and southern (Irish Sea and North Sea) populations. The established, general model of oocyte maturation was consistent with published egg production curves of cod from these waters, considering relevant in situ temperatures recorded by individual data-storage tags on cod. These findings have considerable relevance for future studies of fish recruitment in relation to climate change