Effect of specific amino acid substitutions in the putative fusion peptide of structural glycoprotein E2 on Classical Swine Fever Virus replication

AbstractE2, along with Erns and E1, is an envelope glycoprotein of Classical Swine Fever Virus (CSFV). E2 is involved in several virus functions: cell attachment, host range susceptibility and virulence in natural hosts. Here we evaluate the role of a specific E2 region, 818CPIGWTGVIEC828, containing a putative fusion peptide (FP) sequence. Reverse genetics utilizing a full-length infectious clone of the highly virulent CSFV strain Brescia (BICv) was used to evaluate how individual amino acid substitutions within this region of E2 may affect replication of BICv. A synthetic peptide representing the complete E2 FP amino acid sequence adopted a β-type extended conformation in membrane mimetics, penetrated into model membranes, and perturbed lipid bilayer integrity in vitro. Similar peptides harboring amino acid substitutions adopted comparable conformations but exhibited different membrane activities. Therefore, a preliminary characterization of the putative FP 818CPIGWTGVIEC828 indicates a membrane fusion activity and a critical role in virus replication

Constrained Gauge Fields from Spontaneous Lorentz Violation

Spontaneous Lorentz violation realized through a nonlinear vector field constraint of the type $A_{\mu}A^{\mu}=M^{2}$ ($M$ is the proposed scale for Lorentz violation) is shown to generate massless vector Goldstone bosons, gauging the starting global internal symmetries in arbitrary relativistically invariant theories. The gauge invariance appears in essence as a necessary condition for these bosons not to be superfluously restricted in degrees of freedom, apart from the constraint due to which the true vacuum in a theory is chosen by the Lorentz violation. In the Abelian symmetry case the only possible theory proves to be QED with a massless vector Goldstone boson naturally associated with the photon, while the non-Abelian symmetry case results in a conventional Yang-Mills theory. These theories, both Abelian and non-Abelian, look essentially nonlinear and contain particular Lorentz (and $CPT$) violating couplings when expressed in terms of the pure Goldstone vector modes. However, they do not lead to physical Lorentz violation due to the simultaneously generated gauge invariance.Comment: 15 pages, minor corrections, version to be published in Nucl. Phys.

Spontaneously Generated Tensor Field Gravity

An arbitrary local theory of a symmetric two-tensor field $H_{\mu \nu}$ in Minkowski spacetime is considered, in which the equations of motion are required to be compatible with a nonlinear length-fixing constraint $H_{\mu \nu}^{2}=\pm M^{2}$ leading to spontaneous Lorentz invariance violation, SLIV ($M$ is the proposed scale for SLIV). Allowing the parameters in the Lagrangian to be adjusted so as to be consistent with this constraint, the theory turns out to correspond to linearized general relativity in the weak field approximation, while some of the massless tensor Goldstone modes appearing through SLIV are naturally collected in the physical graviton. In essence the underlying diffeomophism invariance emerges as a necessary condition for the tensor field $H_{\mu \nu}$ not to be superfluously restricted in degrees of freedom, apart from the constraint due to which the true vacuum in the theory is chosen by SLIV. The emergent theory appears essentially nonlinear, when expressed in terms of the pure Goldstone tensor modes and contains a plethora of new Lorentz and $CPT$ violating couplings. However, these couplings do not lead to physical Lorentz violation once this tensor field gravity is properly extended to conventional general relativity.Comment: 27 pages, published version, to appear in Nuclear Physics

Magnetic Fields in the Milky Way

This chapter presents a review of observational studies to determine the magnetic field in the Milky Way, both in the disk and in the halo, focused on recent developments and on magnetic fields in the diffuse interstellar medium. I discuss some terminology which is confusingly or inconsistently used and try to summarize current status of our knowledge on magnetic field configurations and strengths in the Milky Way. Although many open questions still exist, more and more conclusions can be drawn on the large-scale and small-scale components of the Galactic magnetic field. The chapter is concluded with a brief outlook to observational projects in the near future.Comment: 22 pages, 5 figures, to appear in "Magnetic Fields in Diffuse Media", eds. E.M. de Gouveia Dal Pino and A. Lazaria

Single-electron transport driven by surface acoustic waves: moving quantum dots versus short barriers

We have investigated the response of the acoustoelectric current driven by a surface-acoustic wave through a quantum point contact in the closed-channel regime. Under proper conditions, the current develops plateaus at integer multiples of ef when the frequency f of the surface-acoustic wave or the gate voltage Vg of the point contact is varied. A pronounced 1.1 MHz beat period of the current indicates that the interference of the surface-acoustic wave with reflected waves matters. This is supported by the results obtained after a second independent beam of surface-acoustic wave was added, traveling in opposite direction. We have found that two sub-intervals can be distinguished within the 1.1 MHz modulation period, where two different sets of plateaus dominate the acoustoelectric-current versus gate-voltage characteristics. In some cases, both types of quantized steps appeared simultaneously, though at different current values, as if they were superposed on each other. Their presence could result from two independent quantization mechanisms for the acoustoelectric current. We point out that short potential barriers determining the properties of our nominally long constrictions could lead to an additional quantization mechanism, independent from those described in the standard model of 'moving quantum dots'.Comment: 25 pages, 12 figures, to be published in a special issue of J. Low Temp. Phys. in honour of Prof. F. Pobel

Effects of newer kidney protective agents on kidney endpoints provide implications for future clinical trials

Doubling of serum creatinine (equivalent to a 57% decline in the estimated glomerular filtration rate (eGFR)) is an accepted component of a composite kidney endpoint in clinical trials. Smaller declines in eGFR (40%, 50%) have been applied in several recently conducted clinical trials. Here, we assessed the effects of newer kidney protective agents on endpoints including smaller proportional declines in eGFR to compare relative event rates and the magnitude of observed treatment effects. We performed a post hoc analysis of 4401 patients in the CREDENCE, 4304 in the DAPA-CKD, 5734 in the FIDELIO-DKD, and 3668 in the SONAR trials, which assessed the effects of canagliflozin, dapagliflozin, finerenone and atrasentan in patients with chronic kidney disease. Effects of active therapies versus placebo on alternative composite kidney endpoints incorporating different eGFR decline thresholds (40%, 50%, or 57% eGFR reductions from baseline) with kidney failure or death due to kidney failure were compared. Cox-proportional hazards regression models were used to assess and compare treatment effects. During follow-up, event rates were higher for endpoints incorporating smaller versus larger eGFR decline thresholds. Compared to the treatment effects on kidney failure or death due to kidney failure, the magnitude of relative treatment effects was generally similar when considering composite endpoints incorporating smaller declines in eGFR. Hazard ratios for the four interventions ranged from 0.63 to 0.82 for the endpoint incorporating 40% eGFR decline and 0.59 to 0.76 for the endpoint incorporating 57% eGFR decline. Clinical trials incorporating a 40% eGFR decline in a composite endpoint would require approximately half the number of participants compared to a 57% eGFR decline with equivalent statistical power. Thus, in populations at high risk of CKD progression, the relative effects of newer kidney protective therapies appear generally similar across endpoints based on varying eGFR decline thresholds.</p

Quark initiated coherent diffractive production of muon pair and W boson at hadron colliders

The large transverse momentum muon pair and W boson productions in the quark initiated coherent diffractive processes at hadron colliders are discussed under the framework of the two-gluon exchange parametrization of the Pomeron model. In this approach, the production cross sections are related to the small-x off-diagonal gluon distribution and the large-x quark distribution in the proton (antiproton). By approximating the off-diagonal gluon distribution by the usual gluon distribution function, we estimate the production rates of these processes at the Fermilab Tevatron.Comment: 11pages, 6 PS figures, to appear in PR

Diffractive light quark jet production at hadron colliders in the two-gluon exchange model

Massless quark and antiquark jet production at large transverse momentum in the coherent diffractive processes at hadron colliders is calculated in the two-gluon exchange parametrization of the Pomeron model. We use the helicity amplitude method to calculate the cross section formula. We find that for the light quark jet production the diffractive process is related to the differential off-diagonal gluon distribution function in the proton. We estimate the production rate for this process at the Fermilab Tevatron by approximating the off-diagonal gluon distribution function by the usual diagonal gluon distribution in the proton. And we find that the cross sections for the diffractive light quark jet production and the charm quark jet production are in the same order of magnitude. We also use the helicity amplitude method to calculate the diffractive charm jet production at hadron colliders, by which we reproduce the leading logarithmic approximation result of this process we previously calculated.Comment: 15 pages, 4 PS figures, Revte

Extreme Ultra-Violet Spectroscopy of the Lower Solar Atmosphere During Solar Flares

The extreme ultraviolet portion of the solar spectrum contains a wealth of diagnostic tools for probing the lower solar atmosphere in response to an injection of energy, particularly during the impulsive phase of solar flares. These include temperature and density sensitive line ratios, Doppler shifted emission lines and nonthermal broadening, abundance measurements, differential emission measure profiles, and continuum temperatures and energetics, among others. In this paper I shall review some of the advances made in recent years using these techniques, focusing primarily on studies that have utilized data from Hinode/EIS and SDO/EVE, while also providing some historical background and a summary of future spectroscopic instrumentation.Comment: 34 pages, 8 figures. Submitted to Solar Physics as part of the Topical Issue on Solar and Stellar Flare