Climate variability, timing of nesting and breeding success of tree swallows (Tachycineta bicolor)

Recent changes in climate have increased public attention and scientific evaluation of climate impacts on wild animals and plants. Variation in local weather and regional climate may affect breeding success in birds. Migratory species may be sensitive to these changes as breeding and wintering areas may experience different climate variations; some insectivorous species may be unable to alter timing of migration or laying dates and experience a mismatch between timing of nesting and peak insect availability for their nestlings. Therefore, I investigated the influence of local weather variables and regional climate on breeding performance of an insectivorous migrant songbird, the Tree Swallow (Tachycineta bicolor), and tried to examine effects of a mismatch between the timing of breeding and food availability.I used a 14 year data set from St. Denis, Saskatchewan, Canada, 1991-2004, to evaluate correlations among local weather, wetland conditions, aerial insects and regional climate indices and their relationships with variation in clutch initiation date, clutch size, and fledging success. Swallows returned to the study site in late April each year. Annual variation in median clutch initiation date was best explained by mean minimum temperatures during 1-15 May. Larger clutches were laid in years with higher pond water levels (possibly an indication of increased insect availability) and when the Southern Oscillation Index (SOI) was positive (representing La Niña conditions). Fledging success was not influenced greatly by any explanatory variable; however, fledging success tended to increase in years with higher average temperatures. Individual variation in clutch initiation date was examined using path analysis. I found high correlations between initiation date and both local environmental variables and regional climate indices; earlier nesting was associated with warmer temperatures (increased local temperatures, more positive North Atlantic Oscillation Index (NAOI) values and more negative SOI values) and decreased moisture (more positive NAOI values). Two reduced data sets, including female age or insect abundance, were also examined. Clutches were initiated earlier by older females and during springs with higher abundance of aerial insects.I applied two heating treatments to nest boxes used by pre-laying swallows and compared reproductive measures (timing of nesting, laying sequence, clutch size, egg weight and fledging success) of birds using heated boxes to those of females attending unheated control boxes. However, I was unable to directly examine the predictions of the mismatch hypothesis because nest box heating failed to advance laying dates. Furthermore, no increases in clutch size, egg weight and fledging success were detected between treatment and control nests. Although box heating increased nest temperatures an average of 6.1C (+ 0.8 SE) over controls, length of time females spent in heated boxes may have been too short to alleviate energetic constraints on egg production, or energy savings associated with box use were insufficient to supersede the influence of ambient environmental conditions that control food availability and energy expenditure of foraging swallows. My results demonstrated that local and regional climate variation strongly affected timing of nesting in swallows, likely via their effects on food supply

Malaria Parasitemia and Prevalence in the Tufted Titmouse (Baeolophus Bicolor)

Haemosporidians, including the avian malaria parasites, are a diverse group of blood parasites that infect terrestrial vertebrates worldwide. There is variability in parasite prevalence (presence) and parasitemia (infection intensity); infections range from virtually inconsequential to lethal. Prevalence and parasitemia of avian malaria in the Tufted Titmouse (Baeolophus bicolor) were determined (n=81). The genera Plasmodium and Parahaemoproteus were detected and quantified from bird blood using microscopy, polymerase chain reaction (PCR), and quantitative PCR (qPCR). Thirteen lineages of malaria parasites were found. Sequence data from the parasite’s mitochondrial cytochrome b gene indicate that prevalence is 69.1% (Plasmodium-89.3%; Parahaemoprotues-7.1%; double infection-3.6%). Parasitemia was low in all infected birds. Seasonally, parasite prevalence varied significantly. Avian malaria prevalence and parasitemia were not associated with host sex, age, or health. Observations of infection in this naturally infected bird provide details on host susceptibility that are applicable to the understanding of malaria parasites in other avian hosts

Eye Colour, Aging, and Decoy Trap Bias in Lesser Scaup, Aythya affinis

Researchers routinely assume that samples of trapped or captured animals are representative of the overall population, though these assumptions are not always evaluated. We used decoy-trapped Lesser Scaup (Aythya affinis) to assess the reliability of classifying females as yearlings or adults from a distance, based on documented age-related eye-colour changes, and also to evaluate the presence of sex, condition and age biases in decoy trapping. We compared eye colour of trapped females to photographs of known-age females following a published procedure while females were (1) in traps (by using spotting scopes or binoculars) and (2) in-hand. Assuming in-hand age assessments were correct, we found that adults aged from a distance were frequently misclassified as yearlings, but yearlings were never misclassified as adults. Distance between observer and female, overall observation quality, and cloud cover did not influence age assignment success. A larger proportion of males was captured than observed during a survey of the local breeding population. We also found that decoy-trapped females had lower body mass and were more likely to be yearlings compared to pass- and jump-shot females from the same area. We conclude that female Lesser Scaup cannot be accurately aged from a distance using eye colour and concur with other researchers that possible sex, age and condition biases should be evaluated when using decoy traps

Use of waveform lidar and hyperspectral sensors to assess selected spatial and structural patterns associated with recent and repeat disturbance and the abundance of sugar maple (Acer saccharum Marsh.) in a temperate mixed hardwood and conifer forest.

Abstract Waveform lidar imagery was acquired on September 26, 1999 over the Bartlett Experimental Forest (BEF) in New Hampshire (USA) using NASA\u27s Laser Vegetation Imaging Sensor (LVIS). This flight occurred 20 months after an ice storm damaged millions of hectares of forestland in northeastern North America. Lidar measurements of the amplitude and intensity of ground energy returns appeared to readily detect areas of moderate to severe ice storm damage associated with the worst damage. Southern through eastern aspects on side slopes were particularly susceptible to higher levels of damage, in large part overlapping tracts of forest that had suffered the highest levels of wind damage from the 1938 hurricane and containing the highest levels of sugar maple basal area and biomass. The levels of sugar maple abundance were determined through analysis of the 1997 Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) high resolution spectral imagery and inventory of USFS Northern Research Station field plots. We found a relationship between field measurements of stem volume losses and the LVIS metric of mean canopy height (r2 = 0.66; root mean square errors = 5.7 m3/ha, p \u3c 0.0001) in areas that had been subjected to moderate-to-severe ice storm damage, accurately documenting the short-term outcome of a single disturbance event

Effects of Acipenserid herpesvirus 2 on the outcome of a Streptococcus iniae co-infection in white sturgeon (Acipenser transmontanus)

Acipenserid herpesvirus 2 (AciHV-2) is a large double-stranded DNA virus in the family Alloherpesviridae that causes catastrophic outbreaks in young naive white sturgeon (Acipenser transmontanus) populations, with mortalities of up to 80%. Survivors of these infections are suspected to remain latently infected. The gram-positive zoonotic bacterium Streptococcus iniae is another important sturgeon pathogen that causes severe myositis and up to 50% mortality during natural outbreaks. Throughout the last decade, co-infections of AciHV-2 and S. iniae have been reported in cultured white sturgeon in California resulting in severe presentations of piscine streptococcosis. This phenomenon of herpesvirus and streptococcus co-infection appears to span multiple taxa since in humans, it is recognized that a Human herpesvirus 3 infection (VZV) is a negative prognostic indicator for pediatric Invasive Group A Streptococcal infections (IGASI). While a decrease in humoral immunity caused by VZV has been hypothesized as a potentially important factor in IGASI cases, no natural animal model exists to study this process. Moreover, no studies have investigated these reported co-infections in white sturgeon. Therefore, the goal of this study was to investigate the effects of a recent AciHV-2 infection on the outcome of a subsequent S. iniae challenge in white sturgeon fingerlings. When fish were infected with 108 colony forming units (CFU) of S. iniae intramuscularly (IM), a statistically significant decrease in survival of 41% was detected in the co-infection group compared to the S. iniae group (p-value < 0.001). This difference was not observed when fish were infected with 106 CFU of S. iniae IM. At this lower infection dose, however, a statistically significant downregulation of tnfα was observed in the spleen of fish in the co-infection group compared to the S. iniae group (p-value = 0.0098). Analysis of serum from survivors revealed a statistically significant reduction in anti-S. iniae serum IgM and serum serotransferrin in fish from the co-infection group compared to the S. iniae group (p-value = 0.0134 and p-value = 0.0183, respectively). Further studies are indicated to determine what interactions lead to the decreased production of pathogen-specific IgM, serotransferrin, and TNFα in the host

Applying genetic technologies to combat infectious diseases in aquaculture

Disease and parasitism cause major welfare, environmental and economic concerns for global aquaculture. In this review, we examine the status and potential of technologies that exploit genetic variation in host resistance to tackle this problem. We argue that there is an urgent need to improve understanding of the genetic mechanisms involved, leading to the development of tools that can be applied to boost host resistance and reduce the disease burden. We draw on two pressing global disease problems as case studies—sea lice infestations in salmonids and white spot syndrome in shrimp. We review how the latest genetic technologies can be capitalised upon to determine the mechanisms underlying inter- and intra-species variation in pathogen/ parasite resistance, and how the derived knowledge could be applied to boost disease resistance using selective breeding, gene editing and/or with targeted feed treatments and vaccines. Gene editing brings novel opportunities, but also implementation and dissemination challenges, and necessitates new protocols to integrate the technology into aquaculture breeding programmes. There is also an ongoing need to minimise risks of disease agents evolving to overcome genetic improvements to host resistance, and insights from epidemiological and evolutionary models of pathogen infestation in wild and cultured host populations are explored. Ethical issues around the different approaches for achieving genetic resistance are discussed. Application of genetic technologies and approaches has potential to improve fundamental knowledge of mechanisms affecting genetic resistance and provide effective pathways for implementation that could lead to more resistant aquaculture stocks, transforming global aquaculture.publishedVersio

Phase 1 Trials of rVSV Ebola Vaccine in Africa and Europe.

BACKGROUND: The replication-competent recombinant vesicular stomatitis virus (rVSV)-based vaccine expressing a Zaire ebolavirus (ZEBOV) glycoprotein was selected for rapid safety and immunogenicity testing before its use in West Africa. METHODS: We performed three open-label, dose-escalation phase 1 trials and one randomized, double-blind, controlled phase 1 trial to assess the safety, side-effect profile, and immunogenicity of rVSV-ZEBOV at various doses in 158 healthy adults in Europe and Africa. All participants were injected with doses of vaccine ranging from 300,000 to 50 million plaque-forming units (PFU) or placebo. RESULTS: No serious vaccine-related adverse events were reported. Mild-to-moderate early-onset reactogenicity was frequent but transient (median, 1 day). Fever was observed in up to 30% of vaccinees. Vaccine viremia was detected within 3 days in 123 of the 130 participants (95%) receiving 3 million PFU or more; rVSV was not detected in saliva or urine. In the second week after injection, arthritis affecting one to four joints developed in 11 of 51 participants (22%) in Geneva, with pain lasting a median of 8 days (interquartile range, 4 to 87); 2 self-limited cases occurred in 60 participants (3%) in Hamburg, Germany, and Kilifi, Kenya. The virus was identified in one synovial-fluid aspirate and in skin vesicles of 2 other vaccinees, showing peripheral viral replication in the second week after immunization. ZEBOV-glycoprotein-specific antibody responses were detected in all the participants, with similar glycoprotein-binding antibody titers but significantly higher neutralizing antibody titers at higher doses. Glycoprotein-binding antibody titers were sustained through 180 days in all participants. CONCLUSIONS: In these studies, rVSV-ZEBOV was reactogenic but immunogenic after a single dose and warrants further evaluation for safety and efficacy. (Funded by the Wellcome Trust and others; ClinicalTrials.gov numbers, NCT02283099, NCT02287480, and NCT02296983; Pan African Clinical Trials Registry number, PACTR201411000919191.)

Network-based approach to predicting social response during a disease outbreak

Thesis: S.M., Massachusetts Institute of Technology, Sloan School of Management, Operations Research Center, 2014.85Cataloged from PDF version of thesis.Includes bibliographical references (pages 99-104).Epidemic trajectories and associated social responses vary widely between populations, with severe reactions sometimes observed. When confronted with fatal or novel pathogens, people exhibit a variety of behaviors from anxiety to hoarding of medical supplies, overwhelming medical infrastructure and rioting. We developed a coupled network approach to understanding and predicting social response to disease spread. We couple the disease spread and panic spread processes and model them through local interactions between agents. The behavioral contagion process depends on the prevalence of the disease, its perceived risk and a global media signal. We verify the model by analyzing the spread of disease and social response during the 2009 H1N1 outbreak in Mexico City, the 2003 SARS and 2009 H1N1 outbreaks in Hong Kong and the 2012-2013 Boston influenza season, accurately predicting population-level behavior. The effect of interventions on the disease spread and social response is explored, and we implement an optimization study to determine the least cost intervention, taking into account the costs of the disease itself, the intervention and the social response. We show that the optimal strategy is dependent upon the relative costs assigned to infection with the disease, intervention and social response, as well as the perceived risk of infection. This kind of empirically validated model is critical to exploring strategies for public health intervention, increasing our ability to anticipate the response to infectious disease outbreaks.by Shannon M. Fast.S.M

The impact of a short-term training program on workers' sterile processing knowledge and practices in 12 Ethiopian hospitals: A mixed methods study.

BackgroundThe need for increased attention to surgical safety in low- and middle-income countries invited organizations worldwide to support improvements in surgical care. However, little is written about issues in instrument sterilization in low- and middle-income countries including Ethiopia.ObjectiveThe study aims to identify the impact of a sterile processing course, with a training-of-trainers component and workplace mentoring on surgical instrument cleaning and sterilization practices at 12 hospitals in Ethiopia.MethodA mixed-methods research design that incorporates both qualitative and quantitative research approaches to address issues in sterile processing was used for this study. The quantitative data (test results) were validated by qualitative data (hospital assessments, including observations and participant feedback). Twelve hospitals were involved in the training, including two university teaching hospitals from two regions of Ethiopia. In each of the two regions 30 sterile processing staff were invited to participate in a three-day course including theory and skills training; 12-15 of these individuals were invited to remain for a two-day training of trainers course. The collected quantitative data were analysed using a paired t-test by SPSS software, whereas comparative analysis was employed for the qualitative data.ResultsProcess, structural, and knowledge changes were identified following program implementation. Knowledge test results indicated an increase of greater than 20% in participant sterile processing knowledge. Changes in process included improved flow of instruments from dirty to clean, greater attention to detail during the cleaning and decontamination steps, more focused inspection of instruments and careful packaging, as well as changes to how instruments were stored. Those trained to be trainers had taught over 250 additional staff.ConclusionsIncreased attention to and knowledge in sterile processing practices and care of instruments with a short, one-week course provides evidence that a small amount of resources applied to a largely under-resourced area of healthcare can result in decreased risks to patients and staff. Providing education in sterile processing and ensuring staff have the ability to disseminate their learnings to other health care providers results in decreasing risks of hospital associated infections in patients

The complete mitochondrial genome of the Variable Platyfish Xiphophorus variatus

We present the complete mitochondrial genome sequence of the Variable Platyfish, Xiphophorus variatus (Meek 1904) (Cyprinodontiformes: Poeciliidae). The genome consists of 16,624 bp which encodes 13 protein-coding genes, 22 transfer RNAs, 2 ribosomal RNAs, and 1 control region. Genome-wide nucleotide composition is 27.79% adenine, 31.11% cytosine, 15.63% guanine, and 25.48% thymine. The X. variatus mitochondrial genome shares similar GC content and identical gene order and gene strand location with other members of Poeciliidae. The sequence presented herein will be of utility for future phylogenetic and biomedical research and for designing primers for species detection from environmental DNA samples