Genomic organization and sequence dynamics of the AvrPiz-t locus in Magnaporthe oryzae *

Plants utilize multiple layers of defense mechanisms to fight against the invasion of diverse pathogens. The R gene mediates resistance, in most cases, dependent on the co-existence of its cognate pathogen-derived avirulence (Avr) gene. The rice blast R gene Piz-t corresponds in gene-for-gene fashion to the Magnaporthe oryzae Avr gene AvrPiz-t. In this study, we determined and compared the genomic sequences surrounding the AvrPiz-t gene in both avirulent and virulent isolates, designating as AvrPiz-t-ZB15 and avrPiz-t-70-15 regions, respectively. The sequence of the AvrPiz-t-ZB15 region is 120 966 bp whereas avrPiz-t-70-15 is 146 292 bp in length. The extreme sequence similarity and good synteny in gene order and content along with the absence of two predicted genes in the avrPiz-t-70-15 region were observed in the predicted protein-coding regions in the AvrPiz-t locus. Nevertheless, frequent presence/absence and highly dynamic organization of transposable elements (TEs) were identified, representing the major variation of the AvrPiz-t locus between different isolates. Moreover, TEs constitute 27.3% and 43.2% of the genomic contents of the AvrPiz-t-ZB15 and avrPiz-t-70-15 regions, respectively, indicating that TEs contribute largely to the organization and evolution of AvrPiz-t locus. The findings of this study suggest that M. oryzae could benefit in an evolutionary sense from the presence of active TEs in genes conferring avirulence and provide an ability to rapidly change and thus to overcome host R genes

Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses

Colletotrichum species are fungal pathogens that devastate crop plants worldwide. Host infection involves the differentiation of specialized cell types that are associated with penetration, growth inside living host cells (biotrophy) and tissue destruction (necrotrophy). We report here genome and transcriptome analyses of Colletotrichum higginsianum infecting Arabidopsis thaliana and Colletotrichum graminicola infecting maize. Comparative genomics showed that both fungi have large sets of pathogenicity-related genes, but families of genes encoding secreted effectors, pectin-degrading enzymes, secondary metabolism enzymes, transporters and peptidases are expanded in C. higginsianum. Genome-wide expression profiling revealed that these genes are transcribed in successive waves that are linked to pathogenic transitions: effectors and secondary metabolism enzymes are induced before penetration and during biotrophy, whereas most hydrolases and transporters are upregulated later, at the switch to necrotrophy. Our findings show that preinvasion perception of plant-derived signals substantially reprograms fungal gene expression and indicate previously unknown functions for particular fungal cell types

Responses of terrestrial Antarctic ecosystems to climate change

Antarctic terrestrial biota are generally limited by the inexorably linked environmental factors of low summer temperature and lack of available water. However, in parts of the Antarctic, both these factors are changing rapidly on contemporary timescales. Terrestrial biota have concurrently been faced with changes in the timing of UV-B maxima associated with spring ozone depletion. The region of the Antarctic Peninsula and Scotia Arc has experienced one of the most rapid rates of environmental warming seen worldwide over the last 30–50 years. Together with local changes in precipitation, this has resulted in a rapid reduction in extent and thinning of many ice-fields and glaciers, exposing new terrain for colonisation while, at the same time, altering patterns of water availability in terrestrial habitats. The rapid development of communities on newly-exposed ground is also facilitated by the existence of soil propagule banks, which contain propagules of both local and exotic origin. In this paper we collate and review evidence from a range of observational and manipulative studies that investigate the effect of climate change, especially increased temperature, on the processes of colonisation and subsequent community development by plants in the Antarctic. Biological changes that have been associated with climate change are visible in the form of expansions in range and local population numbers amongst elements of the flora. Environmental manipulation experiments further demonstrate the possibility of large and rapid species and community responses to climate amelioration, with many resident biota responding positively, at least in the absence of increased competition from exotic colonists. Manipulation studies are also starting to elucidate more subtle responses to climate changes, at levels ranging from cell biochemistry to habitat and food web structure. Integrating such subtle responses is vital to improving our ability to understand the consequences of climate change, as these may lead to much greater consequential impacts on communities and ecosystems