366 research outputs found
Clustering with shallow trees
We propose a new method for hierarchical clustering based on the optimisation
of a cost function over trees of limited depth, and we derive a
message--passing method that allows to solve it efficiently. The method and
algorithm can be interpreted as a natural interpolation between two well-known
approaches, namely single linkage and the recently presented Affinity
Propagation. We analyze with this general scheme three biological/medical
structured datasets (human population based on genetic information, proteins
based on sequences and verbal autopsies) and show that the interpolation
technique provides new insight.Comment: 11 pages, 7 figure
Design and Experimental Validation of a Ducted Counter-rotating Axial-flow Fans System
An experimental study on the design of counter-rotating axial-flow fans was
carried out. The fans were designed using an inverse method. In particular, the
system is designed to have a pure axial discharge flow. The counter-rotating
fans operate in a ducted-flow configuration and the overall performances are
measured in a normalized test bench. The rotation rate of each fan is
independently controlled. The relative axial spacing between fans can vary from
17% to 310%. The results show that the efficiency is strongly increased
compared to a conventional rotor or to a rotor-stator stage. The effects of
varying the rotation rates ratio on the overall performances are studied and
show that the system has a very flexible use, with a large patch of high
efficient operating points in the parameter space. The increase of axial
spacing causes only a small decrease of the efficiencyComment: accepted in Journal of Fluid Engineerin
First astronomical unit scale image of the GW Ori triple. Direct detection of a new stellar companion
Young and close multiple systems are unique laboratories to probe the initial
dynamical interactions between forming stellar systems and their dust and gas
environment. Their study is a key building block to understanding the high
frequency of main-sequence multiple systems. However, the number of detected
spectroscopic young multiple systems that allow dynamical studies is limited.
GW Orionis is one such system. It is one of the brightest young T Tauri stars
and is surrounded by a massive disk. Our goal is to probe the GW Orionis
multiplicity at angular scales at which we can spatially resolve the orbit. We
used the IOTA/IONIC3 interferometer to probe the environment of GW Orionis with
an astronomical unit resolution in 2003, 2004, and 2005. By measuring squared
visibilities and closure phases with a good UV coverage we carry out the first
image reconstruction of GW Ori from infrared long-baseline interferometry. We
obtain the first infrared image of a T Tauri multiple system with astronomical
unit resolution. We show that GW Orionis is a triple system, resolve for the
first time the previously known inner pair (separation 1.4 AU) and
reveal a new more distant component (GW Ori C) with a projected separation of
8 AU with direct evidence of motion. Furthermore, the nearly equal (2:1)
H-band flux ratio of the inner components suggests that either GW Ori B is
undergoing a preferential accretion event that increases its disk luminosity or
that the estimate of the masses has to be revisited in favour of a more equal
mass-ratio system that is seen at lower inclination. Accretion disk models of
GW Ori will need to be completely reconsidered because of this outer companion
C and the unexpected brightness of companion B.Comment: 5 pages, 9 figures, accepted Astronomy and Astrophysics Letters. 201
Reverse Engineering Gene Networks with ANN: Variability in Network Inference Algorithms
Motivation :Reconstructing the topology of a gene regulatory network is one
of the key tasks in systems biology. Despite of the wide variety of proposed
methods, very little work has been dedicated to the assessment of their
stability properties. Here we present a methodical comparison of the
performance of a novel method (RegnANN) for gene network inference based on
multilayer perceptrons with three reference algorithms (ARACNE, CLR, KELLER),
focussing our analysis on the prediction variability induced by both the
network intrinsic structure and the available data.
Results: The extensive evaluation on both synthetic data and a selection of
gene modules of "Escherichia coli" indicates that all the algorithms suffer of
instability and variability issues with regards to the reconstruction of the
topology of the network. This instability makes objectively very hard the task
of establishing which method performs best. Nevertheless, RegnANN shows MCC
scores that compare very favorably with all the other inference methods tested.
Availability: The software for the RegnANN inference algorithm is distributed
under GPL3 and it is available at the corresponding author home page
(http://mpba.fbk.eu/grimaldi/regnann-supmat
Inference algorithms for gene networks: a statistical mechanics analysis
The inference of gene regulatory networks from high throughput gene
expression data is one of the major challenges in systems biology. This paper
aims at analysing and comparing two different algorithmic approaches. The first
approach uses pairwise correlations between regulated and regulating genes; the
second one uses message-passing techniques for inferring activating and
inhibiting regulatory interactions. The performance of these two algorithms can
be analysed theoretically on well-defined test sets, using tools from the
statistical physics of disordered systems like the replica method. We find that
the second algorithm outperforms the first one since it takes into account
collective effects of multiple regulators
Detecting a stochastic gravitational wave background with the Laser Interferometer Space Antenna
The random superposition of many weak sources will produce a stochastic
background of gravitational waves that may dominate the response of the LISA
(Laser Interferometer Space Antenna) gravitational wave observatory. Unless
something can be done to distinguish between a stochastic background and
detector noise, the two will combine to form an effective noise floor for the
detector. Two methods have been proposed to solve this problem. The first is to
cross-correlate the output of two independent interferometers. The second is an
ingenious scheme for monitoring the instrument noise by operating LISA as a
Sagnac interferometer. Here we derive the optimal orbital alignment for
cross-correlating a pair of LISA detectors, and provide the first analytic
derivation of the Sagnac sensitivity curve.Comment: 9 pages, 11 figures. Significant changes to the noise estimate
Direct constraint on the distance of y2 Velorum from AMBER/VLTI observations
In this work, we present the first AMBER observations, of the Wolf-Rayet and
O (WR+O) star binary system y2 Velorum. The AMBER instrument was used with the
telescopes UT2, UT3, and UT4 on baselines ranging from 46m to 85m. It delivered
spectrally dispersed visibilities, as well as differential and closure phases,
with a resolution R = 1500 in the spectral band 1.95-2.17 micron. We interpret
these data in the context of a binary system with unresolved components,
neglecting in a first approximation the wind-wind collision zone flux
contribution. We show that the AMBER observables result primarily from the
contribution of the individual components of the WR+O binary system. We discuss
several interpretations of the residuals, and speculate on the detection of an
additional continuum component, originating from the free-free emission
associated with the wind-wind collision zone (WWCZ), and contributing at most
to the observed K-band flux at the 5% level. The expected absolute separation
and position angle at the time of observations were 5.1±0.9mas and
66±15° respectively. However, we infer a separation of
3.62+0.11-0.30 mas and a position angle of 73+9-11°. Our analysis thus
implies that the binary system lies at a distance of 368+38-13 pc, in agreement
with recent spectrophotometric estimates, but significantly larger than the
Hipparcos value of 258+41-31 pc
Search for Relativistic Magnetic Monopoles with IceCube
We present the first results in the search for relativistic magnetic
monopoles with the IceCube detector, a subsurface neutrino telescope located in
the South Polar ice cap containing a volume of 1 km. This analysis
searches data taken on the partially completed detector during 2007 when
roughly 0.2 km of ice was instrumented. The lack of candidate events
leads to an upper limit on the flux of relativistic magnetic monopoles of
\Phi_{\mathrm{90%C.L.}}\sim 3\e{-18}\fluxunits for . This is a
factor of 4 improvement over the previous best experimental flux limits up to a
Lorentz boost below . This result is then interpreted for a
wide range of mass and kinetic energy values.Comment: 11 pages, 11 figures. v2 is minor text edits, no changes to resul
Lateral Distribution of Muons in IceCube Cosmic Ray Events
In cosmic ray air showers, the muon lateral separation from the center of the
shower is a measure of the transverse momentum that the muon parent acquired in
the cosmic ray interaction. IceCube has observed cosmic ray interactions that
produce muons laterally separated by up to 400 m from the shower core, a factor
of 6 larger distance than previous measurements. These muons originate in high
pT (> 2 GeV/c) interactions from the incident cosmic ray, or high-energy
secondary interactions. The separation distribution shows a transition to a
power law at large values, indicating the presence of a hard pT component that
can be described by perturbative quantum chromodynamics. However, the rates and
the zenith angle distributions of these events are not well reproduced with the
cosmic ray models tested here, even those that include charm interactions. This
discrepancy may be explained by a larger fraction of kaons and charmed
particles than is currently incorporated in the simulations
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