Geochemical investigation of a sediment core from the Trajan basin at Portus, the harbor of ancient Rome

International audiencea journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research and education use, including for instruction at the authors institution and sharing with colleagues. Other uses, including reproduction and distribution, or selling or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most cases authors are permitted to post their version of the article (e.g. in Word or Tex form) to their personal website or institutional repository. Authors requiring further information regarding Elsevier's archiving and manuscript policies are encouraged to visit: a b s t r a c t From the 1st century AD and for the duration of the Roman Empire, the Portus complex was the main harbor of Rome. Its location on the Tiber delta next to the Tyrrhenian Sea produced rapid environmental changes that, together with historical vicissitudes, largely determined the fate of the harbor. We have assembled data on the mineralogy, sedimentology, geochemistry, and ostracod populations of a sediment core drilled in the access channel of the hexagonal basin of Trajan, with the expectation that such a combined data set will shed new light on how the connections of the inland Trajan basin with the Tiber river, the earlier Claudius harbor on the nearby shoreline, and the sea evolved through the centuries. The data define four distinct periods which geochemistry characterizes by different conditions of salinity and oxygenation. These in turn can be related to historical periods and events by means of 1

Gas temperature profiles in galaxy clusters with Swift XRT: observations and capabilities to map near R200

We investigate the possibility of using the X-ray telescope (XRT) on board the Swift satellite to improve the current accuracy of the ICM temperature measurements in the region close to the virial radius of nearby clusters. We present the spectral analysis of the Swift XRT observations of 6 galaxy clusters and their temperature profiles in the regions within 0.2-0.6 r200. Four of them are nearby famous and very well studied objects (Coma, Abell 1795, Abell 2029 and PKS0745-19). The remaining two, SWJ1557+35 and SWJ0847+13, at redshift z=0.16 and z=0.36, were serendipitously observed by Swift-XRT. We accurately quantify the temperature uncertainties, with particular focus on the impact of the background scatter (both instrumental and cosmic). We extrapolate these results and simulate a deep observation of the external region of Abell 1795 which is assumed here as a case study. In particular we calculate the expected uncertainties in the temperature measurement as far as r200. We find that, with a fairly deep observation (300 ks), the Swift XRT would be able to measure the ICM temperature profiles in the external regions as far as the virial radius, significantly improving the best accuracy among the previous measurements. This can be achieved thanks to the unprecedented combination of good PSF over the full field of view and very accurate control of the instrumental background. Somehow unexpectedly we conclude that, among currently operating telescope, the Swift-XRT is the only potentially able to improve the current accuracy in plasma temperature measurement at the edges of the cluster potential. This will be true until a newgeneration of low-background and large field of view telescopes, aimed to the study of galaxy clusters, will operate. These observations would be of great importance in developing the observing strategy for suchmissions.Comment: Accepted for publication in A&A ;13 pages, 13 figure

Multi-proxy assessment of brachiopod shell calcite as a potential archive of seawater temperature and oxygen isotope composition

Most of our knowledge of past seawater temperature history is based on δ18O values of calcium carbonate fossil shells. However, the determination of past temperatures using this proxy requires the knowledge of past seawater δ18O values, which is generally poorly constrained. Other paleothermometers using carbonate archives, such as Mg/Ca ratios and clumped isotopes (Δ47), have been developed to allow for paleotemperatures to be estimated independently and to allow past ocean δ18O values to be calculated using various groups of calcifying organisms. Articulated brachiopod shells are some of the most commonly used archives in studies of past oceanic geochemistry and temperature. They are abundant in the fossil record since the Cambrian, and for decades, their low Mg–calcite mineralogy has been considered relatively resistant to diagenetic alteration. Here, we investigate the potential of brachiopod shells as recorders of seawater temperatures and seawater δ18O values using new brachiopod shell geochemical data by testing multiple well-established or suggested paleothermometers applied to carbonate archives. Modern articulated brachiopod shells covering a wide range of temperatures (−1.9 to 25.5 ∘C), depths (5 to 3431 m) and salinities (33.4 to 37.0 PSU) were analysed for their stable isotope compositions (δ13C, δ18O and Δ47) and their elemental ratios (Mg/Ca, Sr/Ca, Na/Ca and Li/Ca). Our data allowed us to propose a revised oxygen isotope fractionation equation between modern-brachiopod shell calcite and seawater: (1) T = - 5.0 ( ± 0.2 ) ( δ 18 O c - δ 18 O sw ) + 19.4 ( ± 0.4 ) , where δ18Oc is in ‰ VPDB, δ18Osw is in ‰ VSMOW, and T is in ∘C. Our results strongly support the use of clumped isotopes as an alternative temperature proxy but confirm significant offsets relative to the canonical relationship established for other biogenic and abiogenic calcium carbonate minerals. Brachiopod shell Mg/Ca ratios show no relationship with seawater temperatures, indicating that this ratio is a poor recorder of past changes in temperatures, an observation at variance with several previous studies. Despite significant correlations with brachiopod living temperature, brachiopod shell Sr/Ca, Na/Ca and Li/Ca values indicate the influence of environmental and biological factors unrelated to temperature, which undermines their potential as alternative temperature proxies. Kinetic effects (growth rates) could explain most of the deviation of brachiopod shell calcite from expected isotopic equilibrium with seawater and part of the distribution of Sr/Ca, Na/Ca and Li/Ca ratios.</p

CTL Escape Mediated by Proteasomal Destruction of an HIV-1 Cryptic Epitope

Cytotoxic CD8+ T cells (CTLs) play a critical role in controlling viral infections. HIV-infected individuals develop CTL responses against epitopes derived from viral proteins, but also against cryptic epitopes encoded by viral alternative reading frames (ARF). We studied here the mechanisms of HIV-1 escape from CTLs targeting one such cryptic epitope, Q9VF, encoded by an HIVgag ARF and presented by HLA-B*07. Using PBMCs of HIV-infected patients, we first cloned and sequenced proviral DNA encoding for Q9VF. We identified several polymorphisms with a minority of proviruses encoding at position 5 an aspartic acid (Q9VF/5D) and a majority encoding an asparagine (Q9VF/5N). We compared the prevalence of each variant in PBMCs of HLA-B*07+ and HLA-B*07- patients. Proviruses encoding Q9VF/5D were significantly less represented in HLA-B*07+ than in HLA-B*07- patients, suggesting that Q9FV/5D encoding viruses might be under selective pressure in HLA-B*07+ individuals. We thus analyzed ex vivo CTL responses directed against Q9VF/5D and Q9VF/5N. Around 16% of HLA-B*07+ patients exhibited CTL responses targeting Q9VF epitopes. The frequency and the magnitude of CTL responses induced with Q9VF/5D or Q9VF/5N peptides were almost equal indicating a possible cross-reactivity of the same CTLs on the two peptides. We then dissected the cellular mechanisms involved in the presentation of Q9VF variants. As expected, cells infected with HIV strains encoding for Q9VF/5D were recognized by Q9VF/5D-specific CTLs. In contrast, Q9VF/5N-encoding strains were neither recognized by Q9VF/5N- nor by Q9VF/5D-specific CTLs. Using in vitro proteasomal digestions and MS/MS analysis, we demonstrate that the 5N variation introduces a strong proteasomal cleavage site within the epitope, leading to a dramatic reduction of Q9VF epitope production. Our results strongly suggest that HIV-1 escapes CTL surveillance by introducing mutations leading to HIV ARF-epitope destruction by proteasomes

Elemental concentrations and isotopic ratios data from Calcium isotopes offer clues on resource partitioning among Cretaceous predatory dinosaurs

This file contain all the data collected on samples and standards from this study

X-ray outbursts of ESO 243-49 HLX-1: Comparison with galactic low-mass X-ray binary transients

We studied the outburst properties of the hyper-luminous X-ray source ESO 243-49 HLX-1, using the full set of Swift monitoring observations. We quantified the increase in the waiting time, recurrence time, and e-folding rise timescale along the outburst sequence, and the corresponding decrease in outburst duration, total radiated energy, and e-folding decay timescale, which confirms previous findings. HLX-1 spends less and less time in outburst and more and more time in quiescence, but its peak luminosity remains approximately constant. We compared the HLX-1 outburst properties with those of bright Galactic low-mass X-ray binary transients (LMXBTs). Our spectral analysis strengthens the similarity between state transitions in HLX-1 and those in Galactic LMXBTs. We also found that HLX-1 follows the nearly linear correlations between the hard-to-soft state transition luminosity and the peak luminosity, and between the rate of change of X-ray luminosity during the rise phase and the peak luminosity, which indicates that the occurrence of the hard-to-soft state transition of HLX-1 is similar to those of Galactic LMXBTs during outbursts. We found that HLX-1 does not follow the correlations between total radiated energy and peak luminosity, and between total radiated energy and e-folding rise/decay timescales we had previously identified in Galactic LMXBTs. HLX-1 would follow those correlations if the distance were several hundreds of kiloparsecs. However, invoking a much closer distance for HLX-1 is not a viable solution to this problem, as it introduces other, more serious inconsistencies with the observations