Dissecting dual roles of MyoD during lineage conversion to mature myocytes and myogenic stem cells

The generation of myotubes from fibroblasts upon forced MyoD expression is a classic example of transcription factor-induced reprogramming. We recently discovered that additional modulation of signaling pathways with small molecules facilitates reprogramming to more primitive induced myogenic progenitor cells (iMPCs). Here, we dissected the transcriptional and epigenetic dynamics of mouse fibroblasts undergoing reprogramming to either myotubes or iMPCs using a MyoD-inducible transgenic model. Induction of MyoD in fibroblasts combined with small molecules generated Pax7+ iMPCs with high similarity to primary muscle stem cells. Analysis of intermediate stages of iMPC induction revealed that extinction of the fibroblast program preceded induction of the stem cell program. Moreover, key stem cell genes gained chromatin accessibility prior to their transcriptional activation, and these regions exhibited a marked loss of DNA methylation dependent on the Tet enzymes. In contrast, myotube generation was associated with few methylation changes, incomplete and unstable reprogramming, and an insensitivity to Tet depletion. Finally, we showed that MyoD's ability to bind to unique bHLH targets was crucial for generating iMPCs but dispensable for generating myotubes. Collectively, our analyses elucidate the role of MyoD in myogenic reprogramming and derive general principles by which transcription factors and signaling pathways cooperate to rewire cell identity

Observing response processes with eye tracking in international large-scale assessments: evidence from the OECD PIAAC assessment

This paper reports on a pilot study that used eye tracking techniques to make detailed observations of item response processes in the OECD Programme for the International Assessment of Adult Competencies (PIAAC). The lab-based study also recorded physiological responses using measures of pupil diameter and electrodermal activity. The study tested 14 adult respondents as they individually completed the PIAAC computer-based assessment. The eye tracking observations help to fill an ‘explanatory gap’ by providing data on variation in item response processes that are not captured by other sources of process data such as think aloud protocols or computer-generated log files. The data on fixations and saccades provided detailed information on test item response strategies, enabling profiling of respondent engagement and response processes associated with successful performance. Much of that activity does not include the use of the keyboard and mouse, and involves ‘off-screen’ use of pen and paper (and calculator) that are not captured by assessment log-files. In conclusion, this paper points toward an important application of eye tracking in large-scale assessments. This includes insights into response processes in new domains such as adaptive problem-solving that aim to identify individuals’ ability to select and combine resources from the digital and physical environment

A regulated deficit irrigation strategy for hedgerow olive orchards with high plant density

Background & Aims There is not a consensus on the best irrigation approach for super-high density (SHD) olive orchards. Our aim was to design and test a regulated deficit irrigation (RDI) strategy for a sustainable balance between water saving, tree vigour and oil production. Methods We tested our RDI strategy for 3 years in an ‘Arbequina’ orchard with 1,667 trees ha−1. Two levels of irrigation reduction were applied, 60RDI and 30RDI, scaled to replacing 60 % and 30 %, respectively, of the of irrigation needs (IN). We also had a full irrigation (FI) treatment as control, with IN totalling 4,701 m3 ha−1 Results The 30RDI treatment showed the best balance between water saving, tree vigour and oil production. With a yearly irrigation amount (IA) of 1,366 m3 ha−1, which meant 72 % water saving as compared to FI, the reduction in oil yield was 26 % only. Conclusions Our results, together with recent knowledge on the effect of water stress on fruit development, allowed us to suggest a potentially improved RDI strategy for which a total IA of ca. 2,100 m3 ha−1 was calculated. Both some management details and the benefits of this suggested RDI strategy are still to be tested

Is complementary and alternative medicine (CAM) cost-effective? a systematic review

BACKGROUND: Out-of-pocket expenditures of over $34 billion per year in the US are an apparent testament to a widely held belief that complementary and alternative medicine (CAM) therapies have benefits that outweigh their costs. However, regardless of public opinion, there is often little more than anecdotal evidence on the health and economic implications of CAM therapies. The objectives of this study are to present an overview of economic evaluation and to expand upon a previous review to examine the current scope and quality of CAM economic evaluations. METHODS: The data sources used were Medline, AMED, Alt-HealthWatch, and the Complementary and Alternative Medicine Citation Index; January 1999 to October 2004. Papers that reported original data on specific CAM therapies from any form of standard economic analysis were included. Full economic evaluations were subjected to two types of quality review. The first was a 35-item checklist for reporting quality, and the second was a set of four criteria for study quality (randomization, prospective collection of economic data, comparison to usual care, and no blinding). RESULTS: A total of 56 economic evaluations (39 full evaluations) of CAM were found covering a range of therapies applied to a variety of conditions. The reporting quality of the full evaluations was poor for certain items, but was comparable to the quality found by systematic reviews of economic evaluations in conventional medicine. Regarding study quality, 14 (36%) studies were found to meet all four criteria. These exemplary studies indicate CAM therapies that may be considered cost-effective compared to usual care for various conditions: acupuncture for migraine, manual therapy for neck pain, spa therapy for Parkinson's, self-administered stress management for cancer patients undergoing chemotherapy, pre- and post-operative oral nutritional supplementation for lower gastrointestinal tract surgery, biofeedback for patients with "functional" disorders (eg, irritable bowel syndrome), and guided imagery, relaxation therapy, and potassium-rich diet for cardiac patients. CONCLUSION: Whereas the number and quality of economic evaluations of CAM have increased in recent years and more CAM therapies have been shown to be of good value, the majority of CAM therapies still remain to be evaluated

Crop water stress index is a sensitive water stress indicator in pistachio trees

Regulated deficit irrigation (RDI) strategies, often applied in tree crops, require precise monitoring methods of water stress. Crop water stress index (CWSI), based on canopy temperature measurements, has shown to be a good indicator of water deficits in field crops but has seldom been used in trees. CWSI was measured on a continuous basis in a Central California mature pistachio orchard, under full and deficit irrigation. Two treatments—control, returning the full evapotranspiration (ETc) and RDI—irrigated with 40% ETc during stage 2 of fruit grow (shell hardening). During stage 2, the canopy temperature—measured continuously with infrared thermometers (IRT)—of the RDI treatment was consistently higher than the control during the hours of active transpiration; the difference decreasing after irrigation. The non-water-stressed baseline (NWSB), obtained from clear-sky days canopy–air temperature differential and vapour pressure deficit (VPD) in the control treatment, showed a marked diurnal variation in the intercept, mainly explained by the variation in solar radiation. In contrast, the NWSB slope remained practically constant along the day. Diurnal evolution of calculated CWSI was stable and near zero in the control, but showed a clear rising diurnal trend in the RDI treatment, increasing as water stress increased around midday. The seasonal evolution of the CWSI detected large treatment differences throughout the RDI stress period. While the CWSI in the well-irrigated treatment rarely exceeded 0.2 throughout the season, RDI reached values of 0.8–0.9 near the end of the stress period. The CWSI responded to irrigation events along the whole season, and clearly detected mild water stress, suggesting extreme sensitivity to variations in tree water status. It correlated well with midday leaf water potential (LWP), but was more sensitive than LWP at mild stress levels. We conclude that the CWSI, obtained from continuous nadir-view measurements with IRTs, is a good and very sensitive indicator of water stress in pistachio. We recommend the use of canopy temperature measurements taken from 1200 to 1500 h, together with the following equation for the NWSB: (T c − T a) = −1.33·VPD + 2.44. Measurements of canopy temperature with VPD < 2 kPa are likely to generate significant errors in the CWSI calculation and should be avoided.This work was funded by the California Department of Water Resources, Office of Water Use Efficiency and we thank Peter Brostrom, project manager, for his support and guidance. L. Testi and F. Iniesta were supported by programs AGL2003-01468 and CONSOLIDER-RIDECO C-CSD2006-000672 of the Spanish Ministry of Science and Education.Peer reviewe

Quantifying reductions in consumptive water use under regulated deficit irrigation in pistachio (Pistacia vera L.)

The reduction in agricultural water use in areas of scarce supplies can release significant amounts of water for other uses. As improvements in irrigation systems and management have been widely adopted by fruit tree growers already, there is a need to explore the potential for reducing irrigation requirements via deficit irrigation (DI). It is also important to quantify to what extent the reduction in applied water through DI is translated into net water savings via tree evapotranspiration (ET) reduction. An experiment was conducted in a commercial pistachio orchard in Madera, CA, where a regulated deficit irrigation (RDI) program was applied to a 32.3-ha block, while another block of the same size was fully irrigated (FI). Four trees were instrumented with six neutron probe access tubes each, in the two treatments and the soil water balance method was used to determine tree ET. Seasonal irrigation water in FI, applied through a full-coverage microsprinkler system, amounted to 842 mm, while only 669 mm were applied in RDI. Seasonal ET in FI was 1024 mm, of which 308 mm were computed as evaporation from soil (Es). In RDI, seasonal ET was reduced to 784 mm with 288 mm as Es. The reduction in applied water during the deficit period amounted to 147 mm. The ET of RDI during the deficit period was also reduced relative to that of FI by 133 mm, which represented 33% of the ET of FI during the deficit irrigation period. There was an additional ET reduction in RDI of about 100 mm that occurred in the post-deficit period.