Phenotypic variation of Fucus ceranoides, F. spiralis and F. vesiculosus in a temperate coast (NW Portugal)

Brown algae includes several species of Fucus, reported both in the tidal and intertidal zones of cold and temperate regions. Environmental parameters induce wide biological variability in intertidal algae, manifested by alterations at several levels, and this has lead to the failure of some reports to discriminate between closely related taxa, particularly Fucus species. As the genus Fucus is widely represented on the Portuguese coast, the biometric parameters of three species (F spiralis, F. vesiculosus and F. ceranoides) collected from several sampling sites in Portugal, were studied over twelve months. Environmental parameters (water temperature, pH, dissolved oxygen, salinity, phosphorous - orthophosphate and total phosphate, nitrate, nitrite and ammonia) were analysed. The objective of this study was to understand how environmental parameters influence and establish morphological variation in the Fucus species. Canonical Correspondence Analysis (CCA), which helps define the relationships between morphological and physicochemical variables, was carried out for each species in order to determine which physicochemical parameter most affects the morphology of Fucus. The variable biometric that strongly separates the three Fucus species is the number of receptacles per thalli, and this parameter was highly correlated with F ceranoides. The two others species were distinguished principally by the height of the bigger receptacle, the midrib height of the holdfast, the height of the smaller receptacle, and the midrib width of the holdfast. The CCA analysis also showed that the dominant factor influencing morphometric parameters was salinity, being always in strict correlation with water temperatures and orthophosphate. For F ceranoides, physicochemical parameters (especially a higher concentration of orthophosphate and lower salinity) seem to influence morphological parameters, mainly in the raised number of receptacles per thalli. Salinity was the most important environmental parameter to distinguishing F spiralis and F vesiculosus in northern Portugal.FCT/CONTROL project - PDCTM/C/MAR/15266/199

DIS3 isoforms vary in their endoribonuclease activity and are differentially expressed within haematological cancers

DIS3 is the catalytic subunit of the exosome, a protein complex involved in the 3’ to 5’ degradation of RNAs. DIS3 is a highly conserved exoribonuclease, also known as Rrp44. Global sequencing studies have identified DIS3 as being mutated in a range of cancers, with a considerable incidence in multiple myeloma. In this work, we have identified two proteincoding isoforms of DIS3. Both isoforms are functionally relevant and result from alternative splicing. They differ from each other in the size of their N-terminal PIN domain, which has been shown to have endoribonuclease activity and tether DIS3 to the exosome. Isoform 1 encodes a full-length PIN domain, whereas the PIN domain of isoform 2 is shorter and is missing a segment with conserved amino-acids. We have carried out biochemical activity assays on both isoforms of full-length DIS3 as well as the isolated PIN domains. We find that isoform 2, despite missing part of the PIN domain, has greater endonuclease activity compared to isoform 1. Examination of the available structural information allows us to provide a hypothesis to explain this altered behaviour. Our results also show that multiple myeloma patient cells and all cancer cell lines tested have higher levels of isoform 1 compared to isoform 2 whereas Acute Myeloid Leukemia (AML) and chronic myelomonocytic leukaemia (CMML) patient cells and samples from healthy donors have similar levels of isoforms 1 and 2. Together, our data indicate that significant changes in the ratios of the two isoforms could be symptomatic of haematological cancers

Fucus spp. as a mercury contamination bioindicator in costal areas (Northwestern Portugal)

Mercury has been considered as one of the most important pollutants in coastal and estuarine areas. Efforts have been made to detect, as early as possible, the effects of this and other metals in several species. Macroalgae, particularly Fucus spp., have been widely used as biomonitors of metal pollution. In this study, three Fucus species (F. spiralis, F. vesiculosus and F. ceranoides) were collected from several sampling sites in Portugal. The concentrations of mercury were determined in three structural parts (holdfast, stipe and receptacles). Two different techniques were used to determine mercury concentrations. Almost all mercury concentrations (in sediments and in water) were below national and international standards. Mercury concentration in the specimens (0.012-0.061 mu g g(-1) for receptacles, 0.028-0.221 mu g g(-1) for stipe and 0.029-0.287 mu g g(-1) for holdfast) was always higher that those obtained for the sediment (0.001-0.112 mu g g(-1)). With few exceptions the contrary was found for receptacles. In general, a good agreement between concentrations of mercury in sediment and Fucus was found. The results indicate that Fucus accumulate mercury and may be a suitable species for use in risk assessment for coast and estuarine areas, by providing valuable information regarding the levels of mercury that will be available for the consumers of Fucus spp.FCTCONTROL project - PDCTM/C/MAR/15266/199

Assessment of Mercury in Water, Sediments and Biota of a Southern European Estuary (Sado Estuary, Portugal)

The aim if this study was to assess the distribution of mercury in water, suspended particulate matter, surface sediments and biota from the Sado estuary, which, for the most part, is classified as a natural reserve, so as to evaluate its environmental quality status in terms of mercury contamination. Besides the diffuse sources of mercury coming into the Sado estuary, there are also additional contributions from the northern industrial zone and from the urban areas within the system. Applying national and international guidelines to different environmental matrices, the results obtained show that the system does not seem to be under environmental risk as far as mercury contamination is concerned. These quality guidelines can be used to rank and prioritise sites of concern. Hence, the area at the northern industrialised area deserves particular attention. The concentration of mercury in sediments of this area (0.54 mg kg−1) simultaneously succeeded the European Union Water Framework Directive (EU-WFD) reference value, the OSPAR Convention Ecotoxicological Assessment Criteria (EACs) and is classified as class 2 in degree of contamination by the National legislation, which implies some legal restrictive rules. Considering the stations close to urbanised areas, one exceeded the OSPAR EACs for dissolved mercury, whilst the other exceeded the EU-WFD reference value for mercury concentrations in sediments. No statistical significant relations were found between mercury concentrations in biota (Ulva sp, Hediste diversicolor, Scrobicularia plana, Cerstoderma edule and Carcinus maenas) and in the abiotic matrices (sediment and water column, including mercury in its dissolved form and associated to suspended particulate matter). This paper provides an overview of the guidelines for Hg proposed for a considerable number of coastal systems of the northern hemisphere and highlights the complex interactions of Hg in the different environmental compartments in low contaminated systems

The exosome cofactor Rrp47 is critical for the stability and normal expression of its associated exoribonuclease Rrp6 in Saccharomyces cerevisiae

Rrp6 is a conserved catalytic subunit of the eukaryotic nuclear exosome ribonuclease complex that functions in the productive 3' end maturation of stable RNAs, the degradation of transiently expressed noncoding transcripts and in discard pathways that eradicate the cell of incorrectly processed or assembled RNAs. The function of Rrp6 in these pathways is at least partially dependent upon its interaction with a small nuclear protein called Rrp47/Lrp1, but the underlying mechanism(s) by which Rrp47 functions in concert with Rrp6 are not established. Previous work on yeast grown in rich medium has suggested that Rrp6 expression is not markedly reduced in strains lacking Rrp47. Here we show that Rrp6 expression in rrp47∆ mutants is substantially reduced during growth in minimal medium through effects on both transcript levels and protein stability. Exogenous expression of Rrp6 enables normal levels to be attained in rrp47∆ mutants. Strikingly, exogenous expression of Rrp6 suppresses many, but not all, of the RNA processing and maturation defects observed in an rrp47∆ mutant and complements the synthetic lethality of rrp47∆ mpp6∆ and rrp47∆ rex1∆ double mutants. Increased Rrp6 expression in the resultant rrp47∆ rex1∆ double mutant suppresses the defect in the 3' maturation of box C/D snoRNAs. In contrast, increased Rrp6 expression in the rrp47∆ mpp6∆ double mutant diminishes the block in the turnover of CUTs and in the degradation of the substrates of RNA discard pathways. These results demonstrate that a principal function of Rrp47 is to facilitate appropriate expression levels of Rrp6 and support the conclusion that the Rrp6/Rrp47 complex and Rex1 provide redundant exonuclease activities for the 3' end maturation of box C/D snoRNAs

Mercury pollution in Ria de Aveiro (Portugal): a review of the system assessment

The Ria de Aveiro (Portugal) is a coast al lagoon adjacent to the Atlantic Ocean and it has an inner bay (Laranjo bay) that received a highly contaminated effluent discharged by a mercury cell chlor-alkali plant from the 1950s until 1994. The aim of this study is to review in a holistic way several research studies that have been carried out in the Ria de Aveiro, in order to evaluate the remobilization of the mercury accumulated within the system and the recovery of the lagoon. The spatial distribution of the total mercury in the surrounding terrestrial environment has also been considered. Results indicate that the main mercury contamination problems in the Ria de Aveiro are confined to the Laranjo bay. Mercury export to the coastal waters and its impact on the nearshore compartments (water column, sediment and biota) are low. No direct effects of the mercury from nearby industrial activities were detected in Aveiro’s urban soils, although historical mercury contamination is still affecting soil quality in the immediate vicinity of the chlor-alkali plant, located in Estarreja. Moreover, macrophyte harvesting for human direct or indirect use and the consumption of mussels, crabs and the sea bass from the Laranjo bay may constitute a health risk. Further studies focusing on developing skills for the restoration of the ecosystem are presently underway