Les vecteurs viraux : outils modernes de vaccination

Les vaccins destinés aux animaux appartiennent à deux grandes catégories : les vaccins à agents vivants, et ceux à agents inertes. Depuis quelques années, dans chacune de ces catégories, les innovations technologiques ont considérablement amélioré et diversifié les stratégies vaccinales disponibles en fonction des contraintes liées à des préoccupations tant d’innocuité, que d’efficacité ou encore de nature économique. C’est dans ce cadre que l’INRA a depuis de nombreuses années orienté les efforts de recherche vers l’élaboration de nouveaux vaccins s’appuyant sur la mise au point de vecteurs viraux adaptés à diverses espèces animales et susceptibles de répondre aux exigences des filières animales. Dans cette revue, nous décrivons ainsi les principes d’obtention et le développement de vecteurs vaccinaux fondés sur l’emploi de poxvirus animaux à spectre d’hôte étroit (virus myxomateux), d’adenovirus humains ou animaux défectifs (c'est-à-dire ayant perdu toute capacité à se multiplier chez l’hôte) ainsi que de rhabdovirus de poissons modifiés par génétique inverse. Des exemples d’application de vaccination non seulement contre des maladies animales d’intérêt économique, mais aussi dans le cadre de modèles de pathologie comparée permettent d’illustrer le potentiel indiscutable de ces vecteurs viraux et d’envisager leur emploi pour le contrôle de maladies animales émergentes ou réémergentes en Europe

Viromics on honey-baited FTA cards as a new tool for the detection of circulating viruses in mosquitoes

Worldwide, emerging and re-emerging infectious diseases (EIDs) are a major burden on public and animal health. Arthropod vectors, with mosquitoes being the main contributors of global disease, transmit more than 70% of the recognized EIDs. To assess new alternatives for arthropod-borne viral diseases surveillance, and for the detection of new viruses, honey-baited Flinders Technology Associates (FTA) cards were used as sugar bait in mosquito traps during entomological surveys at the Llobregat River Delta (Catalonia, Spain). Next generation sequencing (NGS) metagenomics analysis was applied on honey-baited FTA cards, which had been exposed to field-captured mosquitoes to characterize their associated virome. Arthropod- and plant-infecting viruses governed the virome profile on FTA cards. Twelve near-complete viral genomes were successfully obtained, suggesting good quality preservation of viral RNAs. Mosquito pools linked to the FTA cards were screened for the detection of mosquito-associated viruses by specific RT-PCRs to confirm the presence of these viruses. The circulation of viruses related to Alphamesonivirus, Quaranjavirus and unclassified Bunyavirales was detected in mosquitoes, and phylogenetic analyses revealed their similarities to viruses previously reported in other continents. To the best our knowledge, our findings constitute the first distribution record of these viruses in European mosquitoes and the first hint of insect-specific viruses in mosquitoes’ saliva in field conditions, demonstrating the feasibility of this approach to monitor the transmissible fraction of the mosquitoes’ virome. In conclusion, this pilot viromics study on honey-baited FTA cards was shown to be a valid approach for the detection of viruses circulating in mosquitoes, thereby setting up an alternative tool for arbovirus surveillance and control programs.info:eu-repo/semantics/publishedVersio

Hepatitis E : an emerging zoonosis ?

Hepatitis E virus (HEV) causes acute, enterically transmitted hepatitis. It is associated with epidemics in endemic regions and sporadic cases in non-endemic regions. Although the waterborne origin of epidemics is well documented, the origin of sporadic cases is frequently autochthonous and remains unknown. Unlike the other hepatitis viruses, HEV has an animal reservoir. Phylogenetic studies on human and animal strains, and the identification of cases transmitted directly from animal to man strongly suggest that HEV is a zoonotic agent. It is essential to set up a surveillance system of the animal reservoir and of human cases to determine the origin of all autochthonous cases. In addition, potential routes of contaminations must be identified to define preventive measures.Le virus de l'hépatite E (VHE) est responsable d'une hépatite aiguë à transmission entérique. La maladie existe sous formes d'épidémies dans les régions endémiques (Asie, Afrique), et de cas sporadiques dans les régions non endémiques. Alors que l'origine hydrique des épidémies est bien caractérisée, celle des cas sporadiques est fréquemment autochtone et reste inconnue. Le VHE se différencie des autres virus des hépatites par la présence d'un réservoir animal. Des études phylogénétiques sur les souches humaines et animales, ainsi que l'identification de cas de transmission directe de l'animal à l'homme suggèrent fortement que le VHE est un agent zoonotique. Il faudrait mettre en place un système de surveillance du réservoir animal, couplé à un observatoire des cas humains, afin de déterminer l'origine de tous les cas autochtones. Les voies possibles de contamination doivent également être identifiées, afin de définir des mesures de prévention

Comparison between Transcriptome Sequencing and 16S Metagenomics for Detection of Bacterial Pathogens in Wildlife

Background Rodents are major reservoirs of pathogens responsible for numerous zoonotic diseases in humans and livestock. Assessing their microbial diversity at both the individual and population level is crucial for monitoring endemic infections and revealing microbial association patterns within reservoirs. Recently, NGS approaches have been employed to characterize microbial communities of different ecosystems. Yet, their relative efficacy has not been assessed. Here, we compared two NGS approaches, RNA-Sequencing (RNA-Seq) and 16S-metagenomics, assessing their ability to survey neglected zoonotic bacteria in rodent populations.Methodology/Principal Findings : We first extracted nucleic acids from the spleens of 190 voles collected in France. RNA extracts were pooled, randomly retro-transcribed, then RNA-Seq was performed using HiSeq. Assembled bacterial sequences were assigned to the closest taxon registered in GenBank. DNA extracts were analyzed via a 16S-metagenomics approach using two sequencers: the 454 GS-FLX and the MiSeq. The V4 region of the gene coding for 16S rRNA was amplified for each sample using barcoded universal primers. Amplicons were multiplexed and processed on the distinct sequencers. The resulting datasets were de-multiplexed, and each read was processed through a pipeline to be taxonomically classified using the Ribosomal Database Project. Altogether, 45 pathogenic bacterial genera were detected. The bacteria identified by RNA-Seq were comparable to those detected by 16S-metagenomics approach processed with MiSeq (16S-MiSeq). In contrast, 21 of these pathogens went unnoticed when the 16S-metagenomics approach was processed via 454-pyrosequencing (16S-454). In addition, the 16S-metagenomics approaches revealed a high level of coinfection in bank voles. Conclusions/Significance :We concluded that RNA-Seq and 16S-MiSeq are equally sensitive in detecting bacteria. Although only the 16S-MiSeq method enabled identification of bacteria in each individual reservoir, with subsequent derivation of bacterial prevalence in host populations, and generation of intra-reservoir patterns of bacterial interactions. Lastly, the number of bacterial reads obtained with the 16S-MiSeq could be a good proxy for bacterial prevalence

Possible Zoonotic Transmission of Hepatitis E from Pet Pig to Its Owner

Hepatitis E is transmitted mainly by water or food, but in industrialized countries, all routes of transmission have not been identified. We describe possible zoonotic transmission of hepatitis E virus that involved direct contact between a pet pig and its owner