Parametric Images in Assessing Bone Grafts Using Dynamic 18F-Fluoride PET

The early identification of graft failure would improve patient management. 18F-fluoride is a suitable tracer for quantifying bone metabolism. Performance of parametric images constructed by Patlak graphical analysis (PGA) with various time periods was evaluated in the analysis of dynamic 18F-fluoride PET studies of eight patients with fibula bone grafts after limb salvage surgery. The PGA parametric image approach tended to underestimate influx rate. The linear portion of PGA analysis was found to be from 10 to 50 min. It shows promise in providing a quantitative assessment of the viability of bone grafts

Production of Bioactive Volatiles by Different Burkholderia ambifaria Strains

Increasing evidence indicates that volatile compounds emitted by bacteria can influence the growth of other organisms. In this study, the volatiles produced by three different strains of Burkholderia ambifaria were analysed and their effects on the growth of plants and fungi, as well as on the antibiotic resistance of target bacteria, were assessed. Burkholderia ambifaria emitted highly bioactive volatiles independently of the strain origin (clinical environment, rhizosphere of pea, roots of maize). These volatile blends induced significant biomass increase in the model plant Arabidopsis thaliana as well as growth inhibition of two phytopathogenic fungi (Rhizoctonia solani and Alternaria alternata). In Escherichia coli exposed to the volatiles of B. ambifaria, resistance to the aminoglycoside antibiotics gentamicin and kanamycin was found to be increased. The volatile blends of the three strains were similar, and dimethyl disulfide was the most abundant compound. Sulfur compounds, ketones, and aromatic compounds were major groups in all three volatile profiles. When applied as pure substance, dimethyl disulfide led to increased plant biomass, as did acetophenone and 3-hexanone. Significant fungal growth reduction was observed with high concentrations of dimethyl di- and trisulfide, 4-octanone, S-methyl methanethiosulphonate, 1-phenylpropan-1-one, and 2-undecanone, while dimethyl trisulfide, 1-methylthio-3-pentanone, and o-aminoacetophenone increased resistance of E. coli to aminoglycosides. Comparison of the volatile profile produced by an engineered mutant impaired in quorum-sensing (QS) signalling with the corresponding wild-type led to the conclusion that QS is not involved in the regulation of volatile production in B. ambifaria LMG strain 1918

Topology polymorphism graph for lung tumor segmentation in PET-CT images

Accurate lung tumor segmentation is problematic when the tumor boundary or edge, which reflects the advancing edge of the tumor, is difficult to discern on chest CT or PET. We propose a ‘topo-poly’ graph model to improve identification of the tumor extent. Our model incorporates an intensity graph and a topology graph. The intensity graph provides the joint PET-CT foreground similarity to differentiate the tumor from surrounding tissues. The topology graph is defined on the basis of contour tree to reflect the inclusion and exclusion relationship of regions. By taking into account different topology relations, the edges in our model exhibit topological polymorphism. These polymorphic edges in turn affect the energy cost when crossing different topology regions under a random walk framework, and hence contribute to appropriate tumor delineation. We validated our method on 40 patients with non-small cell lung cancer where the tumors were manually delineated by a clinical expert. The studies were separated into an ‘isolated’ group (n = 20) where the lung tumor was located in the lung parenchyma and away from associated structures / tissues in the thorax and a ‘complex’ group (n = 20) where the tumor abutted / involved a variety of adjacent structures and had heterogeneous FDG uptake. The methods were validated using Dice’s similarity coefficient (DSC) to measure the spatial volume overlap and Hausdorff distance (HD) to compare shape similarity calculated as the maximum surface distance between the segmentation results and the manual delineations. Our method achieved an average DSC of 0.881  ±  0.046 and HD of 5.311  ±  3.022 mm for the isolated cases and DSC of 0.870  ±  0.038 and HD of 9.370  ±  3.169 mm for the complex cases. Student’s t-test showed that our model outperformed the other methods (p-values <0.05)

Visibility-driven PET-CT Visualisation with Region of Interest (ROI) Segmentation

Multi-modality positron emission tomography – computed tomography (PET-CT) visualises biological and physiological functions (from PET) as region of interests (ROIs) within a higher resolution anatomical reference frame (from CT). The need to efficiently assess and assimilate the information from these co-aligned volumes simultaneously has stimulated new visualisation techniques that combine 3D volume rendering with interactive transfer functions to enable efficient manipulation of these volumes. However, in typical multi-modality volume rendering visualisation, the transfer functions for the volumes are manipulated in isolation with the resulting volumes being fused, thus failing to exploit the spatial correlation that exists between the aligned volumes. Such lack of feedback makes multi-modality transfer function manipulation to be complex and time-consuming. Further, transfer function alone is often insufficient to select the ROIs when it comprises of similar voxel properties to those of non-relevant regions. In this study, we propose a new ROI-based multi-modality visibility-driven transfer function (m2-vtf) for PET-CT visualisation. We present a novel ‘visibility’ metrics, a fundamental optical property that represents how much of the ROIs are visible to the users, and use it to measure the visibility of the ROIs in PET in relation to how it is affected by transfer function manipulations to its counterpart CT. To overcome the difficulty in ROI selection, we provide an intuitive ROIs selection tool based on automated PET segmentation. We further present a multi-modality transfer function automation where the visibility metrics from the PET ROIs are used to automate its CT’s transfer function. Our GPU implementation achieved an interactive visualisation of multi-modality PET-CT with efficient and intuitive transfer function manipulations

The inter-kingdom volatile signal indole promotes root development by interfering with auxin signalling

Recently, emission of volatile organic compounds (VOCs) has emerged as a mode of communication between bacteria and plants. Although some bacterial VOCs that promote plant growth have been identified, their underlying mechanism of action is unknown. Here we demonstrate that indole, which was identified using a screen for Arabidopsis growth promotion by VOCs from soil-borne bacteria, is a potent plant-growth modulator. Its prominent role in increasing the plant secondary root network is mediated by interfering with the auxin-signalling machinery. Using auxin reporter lines and classic auxin physiological and transport assays we show that the indole signal invades the plant body, reaches zones of auxin activity and acts in a polar auxin transport-dependent bimodal mechanism to trigger differential cellular auxin responses. Our results suggest that indole, beyond its importance as a bacterial signal molecule, can serve as a remote messenger to manipulate plant growth and development

Wearing complete dental prostheses - Effects on perioral morphology

Background: To adequately perform rehabilitation of edentulous patients by a complete removable dental prosthesis (CRDP) is from basic interest to dentists to understand the morphologic changes caused by re-establishment of a physiologic jaw relationship. Anthropometric analyses of standardized frontal view and profile photographs may help elucidate such changes. Material and Methods: Photographs of 31 edentulous patients were compared in relaxed lip closure and after insertion of a CRDP in stable occlusion. 2232 anthropometric distances were raised. Eighteen anthropometric indices reflecting the perioral morphology and its integration in the vertical facial harmony were investigated. Results: The intercanthal – mouth width index ( p <.001), medial – lateral cutaneous upper lip height index ( p= .007), lower vermilion contour index ( p= .022), vermilion – total upper lip height index ( p= .018), cutaneous – total up - per lip height index ( p= .023), upper lip – nose height index ( p= .001), nose – upper face height index ( p= .002), chin – mandible height index ( p= .013), upper lip – mandible height index ( p= .045), nose – lower face height index ( p= .018), and nose - face height index ( p= .029) showed significant pre- to post-treatment changes. Conclusions: The investigated anthropometric indices presented reproducible results related to an increase in occlusal vertical dimension. Their application may be helpful in assessment, planning, and explanation of morphologic effects of CRDPs on the perioral and overall facial morphology, which may helps to improve the aesthetic outcome

Electroweak corrections to Neutralino and Chargino decays into a W-boson in the (N)MSSM

We present the complete electroweak one-loop corrections to the partial widths for two-body decays of a chargino (neutralino) into a W-boson and a neutralino (chargino). We perform the calculation for the minimal and the next-to-minimal supersymmetric standard model using an on-shell renormalization scheme. Particular attention is paid to the question of gauge invariance which is achieved using the so-called pinch technique. Furthermore we show that these corrections show a strong parameter dependence and usually are in the range of 1-10 percent if the neutralino involved is a higgsino or wino like state. However, in case of a bino-like or a singlino-like neutralino the corrections can go up to 50% and more. Moreover we present the public program CNNDecays performing these calculations.Comment: 42 pages, 15 figures; discussion of on-shell masses added, renormalization of the electric charge and Bremsstrahlung integrals corrected, published in Nuclear Physics

Consortium Proposal NFDI-MatWerk

This is the official proposal the NFDI-consortium NFDI-MatWerk submitted to the DFG within the request for funding the project. Visit www.dfg.de/nfdi for more infos on the German National Research Data Infrastructure (Nationale Forschungsdateninfrastruktur - NFDI) initiative. Visit www.nfdi-matwerk.de for last infos about the project NFDI-MatWerk