A scaled boundary finite element formulation for poroelasticity

This paper develops the scaled boundary finite element formulation for applications in coupled field problems, in particular, to poroelasticity. The salient feature of this formulation is that it can be applied over arbitrary polygons and/or quadtree decomposition, which is widely employed to traverse between small and large scales. Moreover, the formulation can treat singularities of any order. Within this framework, 2 sets of semianalytical, scaled boundary shape functions are used to interpolate the displacement and the pore fluid pressure. These shape functions are obtained from the solution of vector and scalar Laplacian, respectively, which are then used to discretise the unknown field variables similar to that of the finite element method. The resulting system of equations are similar in form as that obtained using standard procedures such as the finite element method and, hence, solved using the standard procedures. The formulation is validated using several numerical benchmarks to demonstrate its accuracy and convergence properties

Adaptive analysis using scaled boundary finite element method in 3D

In this paper, an adaptive refinement technique using the scaled boundary finite element method (SBFEM) is proposed. The salient feature of this technique is that it is not required to regenerate the mesh for the whole model during the iterations. To this end, a local mesh refinement strategy is implemented based on a polytree algorithm in three dimensions, which can be applied to polyhedral elements with arbitrary number of nodes, edges and faces. These elements constructed by the SBFEM can be used in analysis with their boundaries discretized only, which reduce the difficulty to connect elements with different sizes. An explicit residual based error indicator is developed using the discontinuity of the stress field to guide the adaptive mesh refinement. The accuracy and efficiency of the proposed method are demonstrated using five numerical examples, including complex geometry and stress singularity

Hydraulic fracture at the dam-foundation interface using the scaled boundary finite element method coupled with the cohesive crack model

The scaled boundary finite element method coupled with the cohesive crack model is extended to investigate the hydraulic fracture at the dam-foundation interface. The concrete and rock bulk are modeled by the scaled boundary polygons. Cohesive interface elements model the fracture process zone between the crack faces. The cohesive tractions are modeled as side-face tractions in the scaled boundary polygons. The solution of the stress field around the crack tip is expressed semi-analytically as a power series. Accurate displacement field, stress field and stress intensity factors can be obtained without asymptotic enrichment or local mesh refinement. The proposed procedure is verified by the hydraulic fracture of a rectangular embankment on rigid foundation and applied to the modeling of hydraulic fracture on the dam-foundation interface of a benchmark dam. Different distributions of water pressure inside the crack are investigated. It is found that the water pressure inside the crack decreases the peak overflow to less than 20% of the case without water in the crack. Considering the water lag or not is significant to the response, while different distribution of pressure following the water lag region in the fracture process zone has negligible influence

An adaptive scaled boundary finite element method for contact analysis

In this work, we propose a framework for an adaptive contact analysis in deformable solids using the effective error indicator from the scaled boundary finite element method (SBFEM) with a quadtree decomposition. Further, the SBFEM is implemented with the commercial finite element software, Abaqus, to perform the contact analysis by employing the user element subroutine (UEL) feature. The SBFEM error indicator coupled with the quadtree decomposition is implemented in Matlab and allowed to interact with the Abaqus using .inp file for an adaptive refinement. The detailed implementation of the framework, input data format, and the UEL subroutine which is one of the key features of the proposed work are clearly explained. The effectiveness of the proposed framework is demonstrated by solving several contact problems of engineering significance. The developed SBFEM code can be downloaded from https://github.com/nsundar/sbfem

An unsymmetric 8-node hexahedral element with high distortion tolerance

Among all 3D 8-node hexahedral solid elements in current finite element library, the ‘best’ one can produce good results for bending problems using coarse regular meshes. However, once the mesh is distorted, the accuracy will drop dramatically. And how to solve this problem is still a challenge that remains outstanding. This paper develops an 8-node, 24-DOF (three conventional DOFs per node) hexahedral element based on the virtual work principle, in which two different sets of displacement fields are employed simultaneously to formulate an unsymmetric element stiffness matrix. The first set simply utilizes the formulations of the traditional 8-node trilinear isoparametric element, while the second set mainly employs the analytical trial functions in terms of 3D oblique coordinates (R, S, T). The resulting element, denoted by US-ATFH8, contains no adjustable factor and can be used for both isotropic and anisotropic cases. Numerical examples show it can strictly pass both the first-order (constant stress/strain) patch test and the second-order patch test for pure bending, remove the volume locking, and provide the invariance for coordinate rotation. Especially, it is insensitive to various severe mesh distortions

Investigating Crack Initiation and Propagation of Concrete in Restrained Shrinkage Circular/Elliptical Ring Test

The restrained ring test, which is recommended by AASHTO and ASTM, has been used for assessing the potential of early-age cracking of concrete and other cement-based materials. Recently, a novel elliptical ring test method has been proposed to replace the circular ring test method for the purpose of shortening ring test duration and observing crack initiation and propagation more conveniently. In order to explore the mechanism of this novel test method, a numerical model is developed to analyze crack initiation and propagation process in restrained concrete rings, in which the effect of concrete shrinkage is simulated by a fictitious temperature drop applied on concrete causing the same strain as that induced by shrinkage. First, an elastic analysis is conducted to obtain the circumferential stress contour of a concrete ring subject to restrained shrinkage. Combined with the fictitious crack model, a fracture mechanics method is introduced to determine crack initiation and propagation, in which crack resistance caused by cohesive force acting on fracture process zone is considered. Finite element analysis is carried out to simulate the evolution of stress intensity factor in restrained concrete rings subject to circumferential drying. Cracking age and position of a series of circular/elliptical concrete rings are obtained from numerical analyses which agree reasonably well with experimental results. It is found that the sudden drop of steel strain observed in the restrained ring test represents the onset of unstable crack propagation rather than crack initiation. The results given by the AASHTO/ASTM restrained ring test actually reflects the response of a concrete ring as a structure to external stimulation, in this case restrained concrete shrinkage.The financial support from the National Natural Science Foundation of China under the grants of NSFC 51478083 & 51421064, Engineering and Physical Sciences Research Council under the grant of EP/I031952/1, and the National Basic Research Program of China (973 Program, Grant No. 2015CB057703) is gratefully acknowledged

Adolescent Major Depressive Disorder: Neuroimaging Evidence of Sex Difference during an Affective Go/No-Go Task

Compared to female major depressive disorder (MDD), male MDD often receives less attention. However, research is warranted since there are significant sex differences in the clinical presentation of MDD and a higher rate of suicide in depressed men. To the best of our knowledge, this is the first functional magnetic resonance imaging (fMRI) study with a large sample addressing putative sex differences in MDD during adolescence, a period when one of the most robust findings in psychiatric epidemiology emerges; that females are twice as likely to suffer from MDD than males. Twenty-four depressed and 10 healthy male adolescents, together with 82 depressed and 24 healthy female adolescents, aged 11–18  years, undertook an affective go/no-go task during fMRI acquisition. In response to sad relative to neutral distractors, significant sex differences (in the supramarginal gyrus) and group-by-sex interactions (in the supramarginal gyrus and the posterior cingulate cortex) were found. Furthermore, in contrast to the healthy male adolescents, depressed male adolescents showed decreased activation in the cerebellum with a significant group-by-age interaction in connectivity. Future research may consider altered developmental trajectories and the possible implications of sex-specific treatment and prevention strategies for MDD.The study was funded by the Medical Research Council (grant: G0802226). The IMPACT clinical trial was funded by the NHS Health Technology Assessment (HTA) Programme, Central Manchester and Manchester Children’s University Hospitals NHS Trust, and the Cambridge and Peterborough Mental Health Trust. Additional support was provided by the jointly funded Medical Research Council/Wellcome Trust Behavioural and Clinical Neuroscience Institute, University of Cambridge, and the National Institute for Health Research (NIHR) Cambridge Biomedical Research Centre

Septin6 and Septin7 GTP binding proteins regulate AP-3- and ESCRT-dependent multivesicular body biogenesis

Septins (SEPTs) form a family of GTP-binding proteins implicated in cytoskeleton and membrane organization, cell division and host/pathogen interactions. The precise function of many family members remains elusive. We show that SEPT6 and SEPT7 complexes bound to F-actin regulate protein sorting during multivesicular body (MVB) biogenesis. These complexes bind AP-3, an adapter complex sorting cargos destined to remain in outer membranes of maturing endosomes, modulate AP-3 membrane interactions and the motility of AP-3-positive endosomes. These SEPT-AP interactions also influence the membrane interaction of ESCRT (endosomal-sorting complex required for transport)-I, which selects ubiquitinated cargos for degradation inside MVBs. Whereas our findings demonstrate that SEPT6 and SEPT7 function in the spatial, temporal organization of AP-3- and ESCRT-coated membrane domains, they uncover an unsuspected coordination of these sorting machineries during MVB biogenesis. This requires the E3 ubiquitin ligase LRSAM1, an AP-3 interactor regulating ESCRT-I sorting activity and whose mutations are linked with Charcot-Marie-Tooth neuropathies

A Simple, Inexpensive Device for Nucleic Acid Amplification without Electricity—Toward Instrument-Free Molecular Diagnostics in Low-Resource Settings

Molecular assays targeted to nucleic acid (NA) markers are becoming increasingly important to medical diagnostics. However, these are typically confined to wealthy, developed countries; or, to the national reference laboratories of developing-world countries. There are many infectious diseases that are endemic in low-resource settings (LRS) where the lack of simple, instrument-free, NA diagnostic tests is a critical barrier to timely treatment. One of the primary barriers to the practicality and availability of NA assays in LRS has been the complexity and power requirements of polymerase chain reaction (PCR) instrumentation (another is sample preparation).In this article, we investigate the hypothesis that an electricity-free heater based on exothermic chemical reactions and engineered phase change materials can successfully incubate isothermal NA amplification assays. We assess the heater's equivalence to commercially available PCR instruments through the characterization of the temperature profiles produced, and a minimal method comparison. Versions of the prototype for several different isothermal techniques are presented.We demonstrate that an electricity-free heater based on exothermic chemical reactions and engineered phase change materials can successfully incubate isothermal NA amplification assays, and that the results of those assays are not significantly different from ones incubated in parallel in commercially available PCR instruments. These results clearly suggest the potential of the non-instrumented nucleic acid amplification (NINA) heater for molecular diagnostics in LRS. When combined with other innovations in development that eliminate power requirements for sample preparation, cold reagent storage, and readout, the NINA heater will comprise part of a kit that should enable electricity-free NA testing for many important analytes

Enhanced antitumor efficacy of cisplatin in combination with HemoHIM in tumor-bearing mice

<p>Abstract</p> <p>Background</p> <p>Although cisplatin is one of the most effective chemotherapeutic agents, cisplatin alone does not achieve a satisfactory therapeutic outcome. Also cisplatin accumulation shows toxicity to normal tissues. In this study, we examined the possibility of HemoHIM both to enhance anticancer effect with cisplatin and to reduce the side effects of cisplatin in melanoma-bearing mice.</p> <p>Methods</p> <p>HemoHIM was prepared by adding the ethanol-insoluble fraction to the total water extract of a mixture of 3 edible herbs, Angelica Radix, Cnidium Rhizoma and Paeonia Radix. Anticancer effects of HemoHIM with cisplatin were evaluated in melanoma-bearing mice. We used a Cr⁵¹-release assay to measure the activity of NK/Tc cell and ELISA to evaluate the production of cytokines.</p> <p>Results</p> <p>In melanoma-bearing mice, cisplatin (4 mg/kg B.W.) reduced the size and weight of the solid tumors, and HemoHIM supplementation with cisplatin enhanced the decrease of both the tumor size (p < 0.1) and weight (p < 0.1). HemoHIM itself did not inhibit melanoma cell growth <it>in vitro</it>, and did not disturb the effects of cisplatin <it>in vitro</it>. However HemoHIM administration enhanced both NK cell and Tc cell activity in mice. Interestingly, HemoHIM increased the proportion of NK cells in the spleen. In melanoma-bearing mice treated with cisplatin, HemoHIM administration also increased the activity of NK cells and Tc cells and the IL-2 and IFN-γ secretion from splenocytes, which seemed to contribute to the enhanced efficacy of cisplatin by HemoHIM. Also, HemoHIM reduced nephrotoxicity as seen by tubular cell of kidney destruction.</p> <p>Conclusion</p> <p>HemoHIM may be a beneficial supplement during cisplatin chemotherapy for enhancing the anti-tumor efficacy and reducing the toxicity of cisplatin.</p