118 research outputs found
Resolving The Moth at Millimeter Wavelengths
HD 61005, also known as "The Moth," is one of only a handful of debris disks
that exhibit swept-back "wings" thought to be caused by interaction with the
ambient interstellar medium (ISM). We present 1.3 mm Submillimeter Array (SMA)
observations of the debris disk around HD 61005 at a spatial resolution of 1.9
arcsec that resolve the emission from large grains for the first time. The disk
exhibits a double-peaked morphology at millimeter wavelengths, consistent with
an optically thin ring viewed close to edge-on. To investigate the disk
structure and the properties of the dust grains we simultaneously model the
spatially resolved 1.3 mm visibilities and the unresolved spectral energy
distribution. The temperatures indicated by the SED are consistent with
expected temperatures for grains close to the blowout size located at radii
commensurate with the millimeter and scattered light data. We also perform a
visibility-domain analysis of the spatial distribution of millimeter-wavelength
flux, incorporating constraints on the disk geometry from scattered light
imaging, and find suggestive evidence of wavelength-dependent structure. The
millimeter-wavelength emission apparently originates predominantly from the
thin ring component rather than tracing the "wings" observed in scattered
light. The implied segregation of large dust grains in the ring is consistent
with an ISM-driven origin for the scattered light wings.Comment: 10 pages, 6 figure
Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees
Phylogenetics is now fundamental in life sciences, providing insights into
the earliest branches of life and the origins and spread of epidemics. However,
finding suitable phylogenies from the vast space of possible trees remains
challenging. To address this problem, for the first time, we perform both tree
exploration and inference in a continuous space where the computation of
gradients is possible. This continuous relaxation allows for major leaps across
tree space in both rooted and unrooted trees, and is less susceptible to
convergence to local minima. Our approach outperforms the current best methods
for inference on unrooted trees and, in simulation, accurately infers the tree
and root in ultrametric cases. The approach is effective in cases of empirical
data with negligible amounts of data, which we demonstrate on the phylogeny of
jawed vertebrates. Indeed, only a few genes with an ultrametric signal were
generally sufficient for resolving the major lineages of vertebrate. With
cubic-time complexity and efficient optimisation via automatic differentiation,
our method presents an effective way forwards for exploring the most difficult,
data-deficient phylogenetic questions.Comment: 13 pages, 4 figures, 14 supplementary pages, 2 supplementary figure
Cross-validation to select Bayesian hierarchical models in phylogenetics.
BACKGROUND: Recent developments in Bayesian phylogenetic models have increased the range of inferences that can be drawn from molecular sequence data. Accordingly, model selection has become an important component of phylogenetic analysis. Methods of model selection generally consider the likelihood of the data under the model in question. In the context of Bayesian phylogenetics, the most common approach involves estimating the marginal likelihood, which is typically done by integrating the likelihood across model parameters, weighted by the prior. Although this method is accurate, it is sensitive to the presence of improper priors. We explored an alternative approach based on cross-validation that is widely used in evolutionary analysis. This involves comparing models according to their predictive performance. RESULTS: We analysed simulated data and a range of viral and bacterial data sets using a cross-validation approach to compare a variety of molecular clock and demographic models. Our results show that cross-validation can be effective in distinguishing between strict- and relaxed-clock models and in identifying demographic models that allow growth in population size over time. In most of our empirical data analyses, the model selected using cross-validation was able to match that selected using marginal-likelihood estimation. The accuracy of cross-validation appears to improve with longer sequence data, particularly when distinguishing between relaxed-clock models. CONCLUSIONS: Cross-validation is a useful method for Bayesian phylogenetic model selection. This method can be readily implemented even when considering complex models where selecting an appropriate prior for all parameters may be difficult
Genome-resolved metagenomics suggests a mutualistic relationship between Mycoplasma and salmonid hosts
Salmonids are important sources of protein for a large proportion of the human population. Mycoplasma species are a major constituent of the gut microbiota of salmonids, often representing the majority of microbiota. Despite the frequent reported dominance of salmonid-related Mycoplasma species, little is known about the phylogenomic placement, functions and potential evolutionary relationships with their salmonid hosts. In this study, we utilise 2.9 billion metagenomic reads generated from 12 samples from three different salmonid host species to I) characterise and curate the first metagenome-assembled genomes (MAGs) of Mycoplasma dominating the intestines of three different salmonid species, II) establish the phylogeny of these salmonid candidate Mycoplasma species, III) perform a comprehensive pangenomic analysis of Mycoplasma, IV) decipher the putative functionalities of the salmonid MAGs and reveal specific functions expected to benefit the host. Our data provide a basis for future studies examining the composition and function of the salmonid microbiota
The Peculiar Debris Disk of HD 111520 as Resolved by the Gemini Planet Imager
Using the Gemini Planet Imager (GPI), we have resolved the circumstellar
debris disk around HD 111520 at a projected range of ~30-100 AU in both total
and polarized -band intensity. The disk is seen edge-on at a position angle
of ~165 along the spine of emission. A slight inclination or
asymmetric warping are covariant and alters the interpretation of the observed
disk emission. We employ 3 point spread function (PSF) subtraction methods to
reduce the stellar glare and instrumental artifacts to confirm that there is a
roughly 2:1 brightness asymmetry between the NW and SE extension. This specific
feature makes HD 111520 the most extreme examples of asymmetric debris disks
observed in scattered light among similar highly inclined systems, such as HD
15115 and HD 106906. We further identify a tentative localized brightness
enhancement and scale height enhancement associated with the disk at ~40 AU
away from the star on the SE extension. We also find that the fractional
polarization rises from 10 to 40% from 0.5" to 0.8" from the star. The
combination of large brightness asymmetry and symmetric polarization fraction
leads us to believe that an azimuthal dust density variation is causing the
observed asymmetry.Comment: 9 pages, 8 Figures, 1 table, Accepted to Ap
Characterizing 51 Eri b from 1-5 m: a partly-cloudy exoplanet
We present spectro-photometry spanning 1-5 m of 51 Eridani b, a 2-10
M planet discovered by the Gemini Planet Imager Exoplanet Survey.
In this study, we present new (1.90-2.19 m) and (2.10-2.40
m) spectra taken with the Gemini Planet Imager as well as an updated
(3.76 m) and new (4.67 m) photometry from the NIRC2 Narrow
camera. The new data were combined with (1.13-1.35 m) and
(1.50-1.80 m) spectra from the discovery epoch with the goal of better
characterizing the planet properties. 51 Eri b photometry is redder than field
brown dwarfs as well as known young T-dwarfs with similar spectral type
(between T4-T8) and we propose that 51 Eri b might be in the process of
undergoing the transition from L-type to T-type. We used two complementary
atmosphere model grids including either deep iron/silicate clouds or
sulfide/salt clouds in the photosphere, spanning a range of cloud properties,
including fully cloudy, cloud free and patchy/intermediate opacity clouds.
Model fits suggest that 51 Eri b has an effective temperature ranging between
605-737 K, a solar metallicity, a surface gravity of (g) = 3.5-4.0 dex,
and the atmosphere requires a patchy cloud atmosphere to model the SED. From
the model atmospheres, we infer a luminosity for the planet of -5.83 to -5.93
(), leaving 51 Eri b in the unique position as being one of
the only directly imaged planet consistent with having formed via cold-start
scenario. Comparisons of the planet SED against warm-start models indicates
that the planet luminosity is best reproduced by a planet formed via core
accretion with a core mass between 15 and 127 M.Comment: 27 pages, 19 figures, Accepted for publication in The Astronomical
Journa
Improving and Assessing Planet Sensitivity of the GPI Exoplanet Survey with a Forward Model Matched Filter
We present a new matched filter algorithm for direct detection of point
sources in the immediate vicinity of bright stars. The stellar Point Spread
Function (PSF) is first subtracted using a Karhunen-Lo\'eve Image Processing
(KLIP) algorithm with Angular and Spectral Differential Imaging (ADI and SDI).
The KLIP-induced distortion of the astrophysical signal is included in the
matched filter template by computing a forward model of the PSF at every
position in the image. To optimize the performance of the algorithm, we conduct
extensive planet injection and recovery tests and tune the exoplanet spectra
template and KLIP reduction aggressiveness to maximize the Signal-to-Noise
Ratio (SNR) of the recovered planets. We show that only two spectral templates
are necessary to recover any young Jovian exoplanets with minimal SNR loss. We
also developed a complete pipeline for the automated detection of point source
candidates, the calculation of Receiver Operating Characteristics (ROC), false
positives based contrast curves, and completeness contours. We process in a
uniform manner more than 330 datasets from the Gemini Planet Imager Exoplanet
Survey (GPIES) and assess GPI typical sensitivity as a function of the star and
the hypothetical companion spectral type. This work allows for the first time a
comparison of different detection algorithms at a survey scale accounting for
both planet completeness and false positive rate. We show that the new forward
model matched filter allows the detection of fainter objects than a
conventional cross-correlation technique with a Gaussian PSF template for the
same false positive rate.Comment: ApJ accepte
Performance of the Gemini Planet Imager Non-Redundant Mask and spectroscopy of two close-separation binaries HR 2690 and HD 142527
The Gemini Planet Imager (GPI) contains a 10-hole non-redundant mask (NRM),
enabling interferometric resolution in complement to its coronagraphic
capabilities. The NRM operates both in spectroscopic (integral field
spectrograph, henceforth IFS) and polarimetric configurations. NRM observations
were taken between 2013 and 2016 to characterize its performance. Most
observations were taken in spectroscopic mode with the goal of obtaining
precise astrometry and spectroscopy of faint companions to bright stars. We
find a clear correlation between residual wavefront error measured by the AO
system and the contrast sensitivity by comparing phase errors in observations
of the same source, taken on different dates. We find a typical 5-
contrast sensitivity of at . We explore the
accuracy of spectral extraction of secondary components of binary systems by
recovering the signal from a simulated source injected into several datasets.
We outline data reduction procedures unique to GPI's IFS and describe a newly
public data pipeline used for the presented analyses. We demonstrate recovery
of astrometry and spectroscopy of two known companions to HR 2690 and HD
142527. NRM+polarimetry observations achieve differential visibility precision
of in the best case. We discuss its limitations on
Gemini-S/GPI for resolving inner regions of protoplanetary disks and prospects
for future upgrades. We summarize lessons learned in observing with NRM in
spectroscopic and polarimetric modes.Comment: Accepted to AJ, 22 pages, 14 figure
The Gemini Planet Imager Exoplanet Survey: Giant Planet and Brown Dwarf Demographics From 10-100 AU
We present a statistical analysis of the first 300 stars observed by the
Gemini Planet Imager Exoplanet Survey (GPIES). This subsample includes six
detected planets and three brown dwarfs; from these detections and our contrast
curves we infer the underlying distributions of substellar companions with
respect to their mass, semi-major axis, and host stellar mass. We uncover a
strong correlation between planet occurrence rate and host star mass, with
stars M 1.5 more likely to host planets with masses between 2-13
M and semi-major axes of 3-100 au at 99.92% confidence. We fit a
double power-law model in planet mass (m) and semi-major axis (a) for planet
populations around high-mass stars (M 1.5M) of the form , finding = -2.4 0.8 and
= -2.0 0.5, and an integrated occurrence rate of %
between 5-13 M and 10-100 au. A significantly lower occurrence rate
is obtained for brown dwarfs around all stars, with 0.8% of
stars hosting a brown dwarf companion between 13-80 M and 10-100
au. Brown dwarfs also appear to be distributed differently in mass and
semi-major axis compared to giant planets; whereas giant planets follow a
bottom-heavy mass distribution and favor smaller semi-major axes, brown dwarfs
exhibit just the opposite behaviors. Comparing to studies of short-period giant
planets from the RV method, our results are consistent with a peak in
occurrence of giant planets between ~1-10 au. We discuss how these trends,
including the preference of giant planets for high-mass host stars, point to
formation of giant planets by core/pebble accretion, and formation of brown
dwarfs by gravitational instability.Comment: 52 pages, 18 figures. AJ in pres
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