Combination of DROOL rules and Protégé knowledge bases in the ONTO-H annotation tool

ONTO-H is a semi-automatic collaborative tool for the semantic annotation of documents, built as a Protégé 3.0 tab plug-in. Among its multiple functionalities aimed at easing the document annotation process, ONTO-H uses a rule-based system to create cascading annotations out from a single drag and drop operation from a part of a document into an already existing concept or instance of the domain ontology being used for annotation. It also gives support to the detection of name conflicts and instance duplications in the creation of the annotations. The rule system runs on top of the open source rule engine DROOLS and is connected to the domain ontology used for annotation by means of an ad-hoc programmed Java proxy

Do software models based on the UML aid in source-code comprehensibility? Aggregating evidence from 12 controlled experiments

In this paper, we present the results of long-term research conducted in order to study the contribution made by software models based on the Unified Modeling Language (UML) to the comprehensibility of Java source-code deprived of comments. We have conducted 12 controlled experiments in different experimental contexts and on different sites with participants with different levels of expertise (i.e., Bachelor’s, Master’s, and PhD students and software practitioners from Italy and Spain). A total of 333 observations were obtained from these experiments. The UML models in our experiments were those produced in the analysis and design phases. The models produced in the analysis phase were created with the objective of abstracting the environment in which the software will work (i.e., the problem domain), while those produced in the design phase were created with the goal of abstracting implementation aspects of the software (i.e., the solution/application domain). Source-code comprehensibility was assessed with regard to correctness of understanding, time taken to accomplish the comprehension tasks, and efficiency as regards accomplishing those tasks. In order to study the global effect of UML models on source-code comprehensibility, we aggregated results from the individual experiments using a meta-analysis. We made every effort to account for the heterogeneity of our experiments when aggregating the results obtained from them. The overall results suggest that the use of UML models affects the comprehensibility of source-code, when it is deprived of comments. Indeed, models produced in the analysis phase might reduce source-code comprehensibility, while increasing the time taken to complete comprehension tasks. That is, browsing source code and this kind of models together negatively impacts on the time taken to complete comprehension tasks without having a positive effect on the comprehensibility of source code. One plausible justification for this is that the UML models produced in the analysis phase focus on the problem domain. That is, models produced in the analysis phase say nothing about source code and there should be no expectation that they would, in any way, be beneficial to comprehensibility. On the other hand, UML models produced in the design phase improve source-code comprehensibility. One possible justification for this result is that models produced in the design phase are more focused on implementation details. Therefore, although the participants had more material to read and browse, this additional effort was paid back in the form of an improved comprehension of source code

Surface characterization of human serum albumin and sodium perfluorooctanoate mixed solutions by pendant drop tensiometry and circular dichroism

The interfacial behavior of mixed human serum albumin (HSA)/sodium perfluorooctanoate (C8FONa) solutions is examined by using two experimental techniques, pendant drop tensiometry and circular dichroism spectroscopy. Through the analysis of the surface tension of the mixed solutions, surface competitive adsorption at the air-water interface between C8FONa and HSA is detected. The dynamic adsorption curves exhibit the distinct regimes in their time-dependent surface tension. The nature of these regimes is further analyzed in terms of the variation of the molecules surface areas. As a consequence, a compact and dense structure was formed where protein molecules were interconnected and overlapped. Thus, a reduction of the area occupied per molecule from 100 to 0.2 nm2 is interpreted as a gel-like structure at the surface. The presence of the surfactant seems to favor the formation of this interfacial structure. Finally, measurements of circular dichroism suggests a compaction of the protein due to the association with the surfactant given by an increase of α-helix structure in the complexes as compared to that of pure protein.Fil: Messina, Paula Verónica. Universidad de Santiago de Compostela; España. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Bahía Blanca. Instituto de Química del Sur. Universidad Nacional del Sur. Departamento de Química. Instituto de Química del Sur; ArgentinaFil: Prieto, Gerardo. Universidad de Santiago de Compostela; EspañaFil: Dodero, Veronica Isabel. Universidad de Santiago de Compostela; España. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Bahía Blanca. Instituto de Química del Sur. Universidad Nacional del Sur. Departamento de Química. Instituto de Química del Sur; ArgentinaFil: Cabrerizo-Vilchez, M.A.. Universidad de Granada. Facultad de Ciencias; EspañaFil: Maldonado Valderrama, J.. Universidad de Granada. Facultad de Ciencias; EspañaFil: Ruso, Juan M.. Universidad de Santiago de Compostela; EspañaFil: Sarmiento, Félix. Universidad de Santiago de Compostela; Españ

The effect of air pollution on children’s health: a comparative study between La Plata and Bahía Blanca, Buenos Aires Province, Argentina

We present the results of a study of outdoor air quality in two comparable regions of Buenos Aires province (Argentina), La Plata and Bahía Blanca, developed jointly by researchers of National University in both cities, and of the Hospital of Bahía Blanca, between 2009 and 2011. Both regions are characterized by a large petrochemical complex and a village with outstanding traffic. In this study, we measure levels of volatile organic compounds (VOCs), particulate matter suspended in air (PM) in air outdoor and affectation of respiratory system in children between 6 and 12 years. Also, analysis of the effect of the air pollution exposure was done thought the calculation of potentially increased life time cancer risk (LCR) in children. In both regions, including three areas: urban, industrial and residential (reference area), 20 VOCs were sampled by passive monitoring (3M 3500), and determined by GC/FID, comprising n-alkanes, cycloalkanes, aromatics, chlorinated compounds, terpenoids and ketones; particulate matter (PM10) was token using a low flow sampler MiniVol TAS, and spirometry were performed, using a portable spirometer. The collected data show higher levels of PM10 in Bahía Blanca, both in the industrial zone and urban areas, industrial area of Bahía Blanca with very bad air quality, associable with a 5% increased in mortality. The levels of total VOCs found in the residential area for both regions are comparable. Spirometry parameters of children living in industrial area evidence respiratory disease respect to urban and residential areas.Fil: Colman Lerner, Jorge Esteban. Universidad Nacional de La Plata. Facultad de Ciencias Exactas; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Morales, A.. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Bahía Blanca. Instituto de Química del Sur. Universidad Nacional del Sur. Departamento de Química. Instituto de Química del Sur; ArgentinaFil: Aguilar, M.. Universidad Nacional de La Plata. Fundación Ciencias Exactas; ArgentinaFil: Giuliani, Daniela Silvana. Universidad Nacional de La Plata. Facultad de Ciencias Exactas; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Orte, Marcos Agustín. Universidad Nacional de La Plata. Facultad de Ciencias Exactas; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Ditondo, J.. Hospital Interzonal General de Agudos “Dr. José Penna”; ArgentinaFil: Dodero, Veronica Isabel. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Bahía Blanca. Instituto de Química del Sur. Universidad Nacional del Sur. Departamento de Química. Instituto de Química del Sur; ArgentinaFil: Massolo, L.. Universidad Nacional de La Plata. Facultad de Ciencias Exactas; ArgentinaFil: Sanchez, Erica Yanina. Universidad Nacional de La Plata. Facultad de Ciencias Exactas; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Matamoros, N.. Universidad Nacional de La Plata. Facultad de Ingenieria; ArgentinaFil: Porta, A.. Universidad Nacional de La Plata. Facultad de Ciencias Exactas; Argentin

Effect of the alcoholic strength of unaged wine distillates on the final composition of Brandy de Jerez aged in Sherry Casks®

Brandy is a spirit obtained from distilled wine that has an alcohol content equal to or greater than 36 % ABV (Alcohol by Volume). It undergoes an ageing process in oak wood casks with a capacity of up to 1000 L for a minimum of six months. During this process, a series of physicochemical and sensory changes take place that confer the initial wine distillate with a series of improvements to its sensory profile. Such changes are mainly determined by the intrinsic characteristics of the wood and by those associated with the manufacturing process of the casks. The previous use of the casks, ageing time and the alcoholic strength of the wine distillate are also important factors, among others. The casks, which will have previously contained some type of Sherry wine (such as Fino, Amontillado, Oloroso and Pedro Ximénez), are known as Sherry Casks® and they must be used in the production of Brandy de Jerez. During the ageing of Brandy de Jerez, Sherry Casks® contribute to the final brandy via the compounds that are both inherent to the wood they are made of and from the wine that they initially contained and that were retained in the wood pores. The alcohol content of the wine distillate to be aged significantly affects not only the quality of the brandy, but also the financial cost of the process. This study aimed to determine the influence on brandy of the alcoholic strength of wine distillates aged in static ageing systems using Sherry Casks®. Specifically, we assessed the physicochemical composition and sensory profile of Brandy de Jerez made from wine distillates with three different alcoholic strengths (40 %, 55 % and 68 % ABV) and aged for 24 months. The Brandy de Jerez with lower alcoholic strengths (40 % - 55 % ABV) were found to contain a higher concentration of polyphenolic compounds deriving from the wood as well as from the constituents of the cask-seasoning Sherry wine. The brandies with higher alcoholic strengths exhibited a marked colour change, while the 40 % and 55 % ABV brandies were perceived to have the best sensory characteristics

Neuroimaging Evidence of Major Morpho-Anatomical and Functional Abnormalities in the BTBR T+TF/J Mouse Model of Autism

BTBR T+tf/J (BTBR) mice display prominent behavioural deficits analogous to the defining symptoms of autism, a feature that has prompted a widespread use of the model in preclinical autism research. Because neuro-behavioural traits are described with respect to reference populations, multiple investigators have examined and described the behaviour of BTBR mice against that exhibited by C57BL/6J (B6), a mouse line characterised by high sociability and low self-grooming. In an attempt to probe the translational relevance of this comparison for autism research, we used Magnetic Resonance Imaging (MRI) to map in both strain multiple morpho-anatomical and functional neuroimaging readouts that have been extensively used in patient populations. Diffusion tensor tractography confirmed previous reports of callosal agenesis and lack of hippocampal commissure in BTBR mice, and revealed a concomitant rostro-caudal reorganisation of major cortical white matter bundles. Intact inter-hemispheric tracts were found in the anterior commissure, ventro-medial thalamus, and in a strain-specific white matter formation located above the third ventricle. BTBR also exhibited decreased fronto-cortical, occipital and thalamic gray matter volume and widespread reductions in cortical thickness with respect to control B6 mice. Foci of increased gray matter volume and thickness were observed in the medial prefrontal and insular cortex. Mapping of resting-state brain activity using cerebral blood volume weighted fMRI revealed reduced cortico-thalamic function together with foci of increased activity in the hypothalamus and dorsal hippocampus of BTBR mice. Collectively, our results show pronounced functional and structural abnormalities in the brain of BTBR mice with respect to control B6 mice. The large and widespread white and gray matter abnormalities observed do not appear to be representative of the neuroanatomical alterations typically observed in autistic patients. The presence of reduced fronto-cortical metabolism is of potential translational relevance, as this feature recapitulates previously-reported clinical observations

50 Years of Cetacean Strandings Reveal a Concerning Rise in Chilean Patagonia

Indexación ScopusCetacean strandings (CS) have been reported in increasing numbers in coastal areas worldwide. Although the causes of these strandings are unknown, a number of anthropogenic and environmental factors have been suggested. This paper aims to characterize CS patterns and describe their fine-scale spatiotemporal dynamics. We analysed spatial and spatiotemporal CS patterns in Chile from January 1968 to January 2020. We identified a total of 389 CS events affecting eight cetacean families, 21 genera, and 35 species, which represent more than 85% of the reported species richness for the country. Most CS events (94.1%) were single (i.e., ≤two individuals). There were also 18 mass stranding (three to 24 individuals, 4.1%) and nine unusually large mass stranding events (>25 individuals, 2%). Purely spatial tests showed CS events appearing in random occurrence along the Chilean coast. Local tests for spatio-temporal clusters, however, identified a greater number of hotspots reported in the southernmost part of the country, namely, Chilean Patagonia. Specifically, significant spatio-temporal clusters were identified and defined as containing three or more individuals within a two-month period as a focal coastal event (<1 km radius). It is a cause of concern that CS events in Chile have been increasing consistently over the last decades, and although we were not able to identify their causes, we are able to highlight the importance of changes in climate conditions and of an increase in monitoring activities as primary drivers for such patterns, particularly important in Chilean Patagonia. © 2020, The Author(s).https://www-nature-com.recursosbiblioteca.unab.cl/articles/s41598-020-66484-

The effect of air pollution on children's health: A comparative study between La Plata and Bahía Blanca, Buenos Aires province, Argentina

We present the results of a study of outdoor air quality in two comparable regions of Buenos Aires province (Argentina); La Plata and Bahía Blanca, developed jointly by researchers of the National University in both cities, and of the Hospital of Bahía Blanca, between 2009 and 2011. Both regions are characterized by a large petrochemical complex and a village with outstanding traffic. In this study, we measure levels of volatile organic compounds (VOCs), particulate matter suspended in air (PM) in air outdoor and affectation of respiratory system in children between 6 and 12 years. Also, analysis of the effect of the air pollution exposure was made through the calculation of potentially increased life time cancer risk (LCR) in children. In both regions, including three areas: urban, industrial and residential (reference area), 20 VOCs were sampled by passive monitoring (3M 3500), and determined by GC/FID, comprising n-alkanes, cycloalkanes, aromatics, chlorinated compounds, terpenoids and ketones; particulate matter (PM10) was token using a low flow sampler MiniVol TAS, and spirometry were performed, using a portable spirometer. The collected data show higher levels of PM10 in Bahía Blanca, both in the industrial zone and urban areas, the industrial area of Bahía Blanca with very bad air quality, associable with a 5% increase in mortality. The levels of total VOCs found in the residential area for both regions are comparable. Spirometry parameters of children living in an industrial area evidence respiratory disease with respect to urban and residential areas.Facultad de Ciencias ExactasFacultad de Ingenierí

Presencia de enfermedades en majadas caprinas de las quebradas áridas de Jujuy y Salta

Una encuesta transversal ad hoc se llevó a cabo en 40 unidades productoras familiares (UPF) de las áridas en las provincias de Jujuy y Salta, con el objetivo de describir la presencia de enfermedades en sus majadas caprinas. Se recabaron datos del manejo general y sanitario en particular. Se procesaron sueros para el diagnóstico de brucelosis por las pruebas tamiz del antígeno bufferado en placa (BPA) y confirmadas por polarización fluorecente (FPA), para paratuberculosis (PTBC), artritis-encefalitis (CAEV), chlamydiosis, herpesvirus caprino tipo 1 (CaHV-1), fiebre Q y toxoplasmosis se utilizó ELISA indirecto y para leptospirosis microaglutinación. Se determinaron los valores de Cu2+, Zn2+, Mg2+ y Ca2+ sérico por espectofotómetría de absorción atómica. En heces, se realizó el recuento de huevos de helmintos por gramo (hpg) y la diferenciación de géneros por coprocultivo.Las UPF tuvieron en promedio 91,4±75 caprinos (sin contar cabritos), siendo el 80,9% cabras madres. La cría fue extensiva con encierre nocturno y la alimentación de la majada se basó mayormente en el pastoreo de los cerros y de cultivos y rastrojos. La parición se concentró en dos períodos, uno principal en abril-julio y una segunda parición de menor número de cabras ubicada en octubre-diciembre. El 92,3% de los productores desparasitaba en forma rutinaria toda la majada con ivermectina, albendazole o closantel y el 71,8 % trataba los piojos. En un 61,5% de las UPF se inyectaba mineralizantes-vitamínicos a toda la majada y en solo un 15,4% se vacunaba contra enfermedades clostridiales. El promedio de la tasa de mortalidad anual por majada fue del 14,2±11%. En el 86,4% de las UPF se registró la ocurrencia de abortos, y de estos el 42,9% presentó retención de placenta. El promedio intramajada de abortos comunicados fue del 8,6±8,5%. El 75% de las UPF declaró tener ectima contagioso, aunque solo el 22% dijo que era grave. Se registraron un 30,4% cuadros de muertes agudas probablemente por infecciones clostridiales. En el 72,7% de las UPF se registraron problemas de mastitis. El porcentaje de UPF con seroprevalencia positiva a brucelosis, leptospirosis, paratuberculosis, toxoplasmosis, clamidiosis, CpHV-1, CAEV y fiebre Q fue respectivamente de 0%, 25%, 50%, 42,8%, 88,8%, 85,7%, 12,5% y 0%. Las UPF destacaron la importancia de los piojos (Linognathus spp.: 87%). Los promedios de los hpg fueron en abril-mayo, julio-agosto y septiembre-noviembre respectivamente de 407, 332 y 59 con Haemonchus y en menor medida Trichostrongylus como nematodes predominantes. En el 76% de las UPF se diagnosticó Fasciolosis. El 30,8% de las UPF describió la presencia a la faena de quistes hidatídicos. En un 31% de las majadas se describió bocio. Los promedios por UPF de cobre, zinc, magnesio y calcio séricos fueron respectivamente 0,48 ±0,10 ppm, 0,73±0,16 ppm, 2,4±0,47mg/d y 7,25±2,25 mg/dl. Se describieron casos de timpanismo espumoso (43,5%), muertes (36%) atribuidas por los propietarios a la ingesta de ñusco, mio mio y sunchillo y un 38,1% de las UPF dijeron padecer casos de intoxicación con cegadera (Heterophyllaea pustulata). Un 66,7% de los propietarios declararon tener problemas de pérdidas de animales en el monte a causa mayormente de pumas. Estos primeros resultados en cuanto a mortandad y presencia de enfermedades y zoonosis, muestran la importancia de llevar a cabo estudios más específicos respecto de la salud de las majadas para incrementar la producción y el bienestar general de las familias productoras.Fil: Suarez, V. H.. Instituto Nacional de Tecnología Agropecuaria; ArgentinaFil: Dodero, Ana Mariela. Instituto Nacional de Tecnología Agropecuaria; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Nievas, J. D.. Instituto Nacional de Tecnología Agropecuaria; ArgentinaFil: Martinez, G. M.. Instituto Nacional de Tecnología Agropecuaria. Centro Regional Salta-Jujuy. Estación Experimental Agropecuaria Salta; ArgentinaFil: Bertoni, E. A.. Instituto Nacional de Tecnología Agropecuaria; ArgentinaFil: Salatin, A. O.. Instituto Nacional de Tecnología Agropecuaria; ArgentinaFil: Viñabal, A. E.. Instituto Nacional de Tecnología Agropecuaria; ArgentinaFil: Grossberger, G.. No especifíca;Fil: Brihuega, Bibiana. Instituto Nacional de Tecnología Agropecuaria. Centro de Investigación en Ciencias Veterinarias y Agronómicas; ArgentinaFil: Romera, Sonia. Instituto Nacional de Tecnología Agropecuaria; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Pinto, G.. Instituto Nacional de Tecnología Agropecuaria; Argentin

Autologous stem-cell transplantation as consolidation of first-line chemotherapy in patients with peripheral T-cell lymphoma : a multicenter GELTAMO/FIL study

Peripheral T-cell lymphomas (PTCL) are a heterogeneous group of rare lymphoid malignancies that mostly have poor prognoses with currently available treatments. Upfront consolidation with autologous stem cell transplantation (ASCT) is frequently carried out, but its efficacy has never been investigated in randomized trials. We designed a multicenter, international, retrospective study with the main objective of comparing progression-free survival and overall survival of patients with PTCL who underwent ASCT in complete remission (CR) after first-line chemotherapy with a control group who did not undergo ASCT. From the initial population of 286 registered patients, 174 patients with PTCL other than anaplastic large cell lymphoma, ALK-positive, deemed fit for ASCT at the time of diagnosis, and who were in CR or uncertain CR after induction therapy (CR1) were included in our analysis. one hundred and three patients underwent ASCT, whereas 71 did not, in most cases (n=53) because the physician decided against it. With a median follow-up of 65.5 months, progression-free survival was significantly better in the transplanted patients than in the non-transplanted group: 63% versus 48% at 5 years (P =0.042). Overall survival was significantly longer for ASCT patients in the subgroup with advanced stage at diagnosis (5-year overall survival: 70% vs. 50%, P =0.028). In the multivariate analysis, first-line ASCT was associated with significantly prolonged progression-free survival (HR=0.57, 95% CI: 0.35-0.93) and overall survival (HR=0.57, 95% CI: 0.33-0.99). In conclusion, our study supports the use of ASCT as a consolidation strategy for patients with PTCL in CR1. These results should be confirmed in a prospective randomized study