Response of a natural Antarctic phytoplankton assemblage to changes in temperature and salinity

The climate around the Western Antarctic Peninsula (WAP) is rapidly changing and dramatically affecting marine coastal waters. Increases in air and seawater temperatures, not matter how small, can alter coastal biological communities due to both temperature increases as well as salinity reduction from glacier melting. The aim of this study was to evaluate the individual and combined effects of elevated sea surface temperature (+4 °C) and decreased salinity (−4) on growth and assemblage composition of natural summer phytoplankton from Potter Cove (King George Island, South Shetlands, northern WAP), using an outdoor microcosm experiment. Pigment composition was analyzed by high performance liquid chromatography (HPLC/Chemtax) and species composition by light and electron microscopy. Increases in phytoplankton biomass during the first 3 days at elevated-temperatures coincided with an increase in the abundance and the specific growth rate of small centric diatoms (Chaetoceros socialis and Shionodiscus gaarderae, mostly observed in temperate waters) and unidentified small phytoflagellates <5 μm. In contrast, pennate diatoms significantly decreased. At the end of the experiment on day 7, under nitrate and phosphate limitation, chlorophytes abundances increased under low salinity whereas prasinophytes decreased in all treatments. This study suggests that climate change could notably affect Antarctic phytoplankton composition by favouring temperate-water species previously undetected in Antarctic waters, such us S. gaarderae. Moreover, the observed changes in phytoplankton structure, associated with an increase of nano- over micro-size taxa, could have important implications for future Antarctic food webs

Low particulate carbon to nitrogen ratios in marine surface waters of the Arctic

During the Canada Three Oceans and Joint Ocean Ice Study projects in the summers of 2007 and 2008, we measured particulate organic carbon to nitrogen ratios (POC:PON) throughout the euphotic zone in subarctic and arctic waters. Depth-integrated values averaged 2.65 (±0.19) in the Beaufort Sea and Canada Basin (BS-CB domain), and were much lower than both the Redfield ratio (6.6) and the average ratios (3.9 to 5.6) measured across other arctic-subarctic domains. Average uptake ratios of C and N (ρC:ρN) were also lower (0.87±0.14) in BS-CB than in the other four domains (2.10 to 3.51). Decreasing POC:PON ratios were associated with low concentrations of phytoplankton C, reduced abundance of biogenic silica (bSiO2), a smaller relative contribution of the >5 µm fraction to total chlorophyll a and a larger relative contribution of small flagellates (<8 µm) to phytoplankton C. In the subsurface chlorophyll a maximum (SCM) within the BS-CB domain, phytoplankton C represented only ~13% of POC, and therefore low POC:PON may be influenced by the presence of heterotrophic microbes. These ratios are supported by data obtained during other arctic programs in 2006, 2008 and 2009. Previous work has suggested a link between freshening of surface waters and increasing dominance of picophytoplankton and bacterioplankton in the Canada Basin, and the low POC:PON ratios measured during this study may be a consequence of this shift. Our results have ramifications for the conversion between C- and N-based estimates of primary productivity, and for biogeochemical modeling of marine arctic waters.Facultad de Ciencias Naturales y Muse

Response of a natural Antarctic phytoplankton assemblage to changes in temperature and salinity

The climate around the Western Antarctic Peninsula (WAP) is rapidly changing and dramatically affecting marine coastal waters. Increases in air and seawater temperatures, not matter how small, can alter coastal biological communities due to both temperature increases as well as salinity reduction from glacier melting. The aim of this study was to evaluate the individual and combined effects of elevated sea surface temperature (+4 °C) and decreased salinity (−4) on growth and assemblage composition of natural summer phytoplankton from Potter Cove (King George Island, South Shetlands, northern WAP), using an outdoor microcosm experi-ment. Pigment composition was analyzed by high performance liquid chromatography (HPLC/Chemtax) and species composition by light and electron microscopy. Increases in phytoplankton biomass during the first 3 days at elevated-temperatures coincided with an increase in the abundance and the specific growth rate of small centric diatoms (Chaetoceros socialis and Shionodiscus gaarderae, mostly observed in temperate waters) and unidentified small phytoflagellates &lt; 5 μm. In contrast, pennate diatoms significantly decreased. At the end of the experiment on day 7, under nitrate and phosphate limitation, chlorophytes abundances increased under low salinity whereas prasinophytes decreased in all treatments. This study suggests that climate change could notably affect Antarctic phytoplankton composition by favouring temperate-water species previously undetected in Antarctic waters, such us S. gaarderae. Moreover, the observed changes in phytoplankton structure, associated with an increase of nano- over micro-size taxa, could have important implications for future Antarctic food webs.Facultad de Ciencias Naturales y Muse

Zonation of Ribosomal DNA Transcription Defines a Stem Cell Hierarchy in Colorectal Cancer

Colorectal cancers (CRCs) are composed of an amalgam of cells with distinct genotypes and phenotypes. Here, we reveal a previously unappreciated heterogeneity in the biosynthetic capacities of CRC cells. We discover that the majority of ribosomal DNA transcription and protein synthesis in CRCs occurs in a limited subset of tumor cells that localize in defined niches. The rest of the tumor cells undergo an irreversible loss of their biosynthetic capacities as a consequence of differentiation. Cancer cells within the biosynthetic domains are characterized by elevated levels of the RNA polymerase I subunit A (POLR1A). Genetic ablation of POLR1A-high cell population imposes an irreversible growth arrest on CRCs. We show that elevated biosynthesis defines stemness in both LGR5+ and LGR5− tumor cells. Therefore, a common architecture in CRCs is a simple cell hierarchy based on the differential capacity to transcribe ribosomal DNA and synthesize proteins

México y Jalisco en la coyuntura : primer semestre de 1998

Análisis de coyuntura sobre los principales sucesos del primer semestre de 1997 en Jalisco, a nivel político, económico y social: la situación en el estado de los tres principales partidos políticos (PAN, PRI y PRD), la cuestión laboral, los derechos humanos y el problema de abastecimiento de agua en la zona metropolitana de Guadalajara.ITESO, A.C

Rates and Pathways of N2 Production in a Persistently Anoxic Fjord: Saanich Inlet, British Columbia

Marine oxygen minimum zones (OMZs) support 30–50% of global fixed-nitrogen (N) loss but comprise only 7% of total ocean volume. This N-loss is driven by canonical denitrification and anaerobic ammonium oxidation (anammox), and the distribution and activity of these two processes vary greatly in space and time. Factors that regulate N-loss processes are complex, including organic matter availability, oxygen concentrations, and NO2− and NH4+ concentrations. While both denitrification and anammox produce N2, the overall geochemical outcome of these processes are different, as incomplete denitrification, for example, produces N2O, which is a potent greenhouse gas. Information on rates of anammox and denitrification and more detailed ecophysiological knowledge of the microorganisms catalyzing these processes are needed to develop more robust models of N-loss in OMZs. To this end, we conducted monthly incubations with 15N-labeled N during under anoxic conditions and during a deep water renewal cycle in Saanich Inlet, British Columbia, a persistently anoxic fjord. Both denitrification and anammox operated throughout the low oxygen water column with depth integrated rates of anammox and denitrification ranging from 0.15 ± 0.03 to 3.4 ± 0.3 and 0.02 ± 0.006 to 14 ± 2 mmol N2 m−2 d−1, respectively. Most N2 production in Saanich Inlet was driven by denitrification, with high rates developing in response to enhanced substrate supply from deep water renewal. Dynamics in rates of denitrification were linked to shifts in microbial community composition. Notably, periods of intense denitrification were accompanied by blooms in an Arcobacter population against a background community dominated by SUP05 and Marinimicrobia. Rates of N2 production through denitrification and anammox, and their dynamics, were then explored through flux-balance modeling with higher rates of denitrification linked to the physiology of substrate uptake. Overall, both denitrification and anammox operated throughout the year, contributing to an annual N-loss of 2 × 10−3 Tg N2 yr−1, 37% of which we attribute to anammox and 63% to complete denitrification. Extrapolating these rates from Saanich Inlet to all similar coastal inlets in BC (2478 km2), we estimate that these inlets contribute 0.1% to global pelagic N-loss

In Vitro and In Vivo Efficacy of Ether Lipid Edelfosine against Leishmania spp. and SbV-Resistant Parasites

Leishmaniasis represents a major international health problem, has a high morbidity and mortality rate, and is classified as an emerging and uncontrolled disease by the World Health Organization. The migration of population from endemic to nonendemic areas, and tourist activities in endemic regions are spreading the disease to new areas. Unfortunately, treatment of leishmaniasis is far from satisfactory, with only a few drugs available that show significant side-effects. Here, we show in vitro and in vivo evidence for the antileishmanial activity of the ether phospholipid edelfosine, being effective against a wide number of Leishmania spp. causing cutaneous, mucocutaneous and visceral leishmaniasis. Our experimental mouse and hamster models demonstrated not only a significant antileishmanial activity of edelfosine oral administration against different wild-type Leishmania spp., but also against parasites resistant to pentavalent antimonials, which constitute the first line of treatment worldwide. In addition, edelfosine exerted a higher antileishmanial activity and a lower proneness to generate drug resistance than miltefosine, the first drug against leishmaniasis that can be administered orally. These data, together with our previous findings, showing an anti-inflammatory action and a very low toxicity profile, suggest that edelfosine is a promising orally administered drug for leishmaniasis, thus warranting clinical evaluation

An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge

There is tremendous potential for genome sequencing to improve clinical diagnosis and care once it becomes routinely accessible, but this will require formalizing research methods into clinical best practices in the areas of sequence data generation, analysis, interpretation and reporting. The CLARITY Challenge was designed to spur convergence in methods for diagnosing genetic disease starting from clinical case history and genome sequencing data. DNA samples were obtained from three families with heritable genetic disorders and genomic sequence data were donated by sequencing platform vendors. The challenge was to analyze and interpret these data with the goals of identifying disease-causing variants and reporting the findings in a clinically useful format. Participating contestant groups were solicited broadly, and an independent panel of judges evaluated their performance. RESULTS: A total of 30 international groups were engaged. The entries reveal a general convergence of practices on most elements of the analysis and interpretation process. However, even given this commonality of approach, only two groups identified the consensus candidate variants in all disease cases, demonstrating a need for consistent fine-tuning of the generally accepted methods. There was greater diversity of the final clinical report content and in the patient consenting process, demonstrating that these areas require additional exploration and standardization. CONCLUSIONS: The CLARITY Challenge provides a comprehensive assessment of current practices for using genome sequencing to diagnose and report genetic diseases. There is remarkable convergence in bioinformatic techniques, but medical interpretation and reporting are areas that require further development by many groups

Multiple novel prostate cancer susceptibility signals identified by fine-mapping of known risk loci among Europeans

Genome-wide association studies (GWAS) have identified numerous common prostate cancer (PrCa) susceptibility loci. We have fine-mapped 64 GWAS regions known at the conclusion of the iCOGS study using large-scale genotyping and imputation in 25 723 PrCa cases and 26 274 controls of European ancestry. We detected evidence for multiple independent signals at 16 regions, 12 of which contained additional newly identified significant associations. A single signal comprising a spectrum of correlated variation was observed at 39 regions; 35 of which are now described by a novel more significantly associated lead SNP, while the originally reported variant remained as the lead SNP only in 4 regions. We also confirmed two association signals in Europeans that had been previously reported only in East-Asian GWAS. Based on statistical evidence and linkage disequilibrium (LD) structure, we have curated and narrowed down the list of the most likely candidate causal variants for each region. Functional annotation using data from ENCODE filtered for PrCa cell lines and eQTL analysis demonstrated significant enrichment for overlap with bio-features within this set. By incorporating the novel risk variants identified here alongside the refined data for existing association signals, we estimate that these loci now explain ∼38.9% of the familial relative risk of PrCa, an 8.9% improvement over the previously reported GWAS tag SNPs. This suggests that a significant fraction of the heritability of PrCa may have been hidden during the discovery phase of GWAS, in particular due to the presence of multiple independent signals within the same regio