Evaluating the roles of directed breeding and gene flow in animal domestication

Peer reviewedPostprin

Reply to Ellis et al.: human niche construction and evolutionary theory

We are pleased Ellis et al. found value in our recent synthesis of the deep history of human impacts on global ecosystems and agree that our paper should influence the current debate on if and how an Anthropocene epoch is defined. We also agree that the ecological consequences of human niche construction have profound and growing effects on the evolutionary trajectories of humans and other species living within human-altered ecosystems. Niche construction theory (NCT) provides an explicit framework for linking evolutionary and ecological processes into a coherent theory of biological evolution. Of special appeal to us as archaeologists is that NCT bridges biological and cultural evolution by including human culture and social learning within the mechanisms of evolutionary change, allowing scientists to address issues at the interface of human and natural systems. Some of us have contributed significantly to human NCT, addressing some of the very issues raised by Ellis et al. Finally, we agree that human transformations of ecosystems are inherently social processes—clearly humans are intensely social organisms—and that such processes result from long-term melding of biological and cultural evolution

Metabolic, health and lifestyle profiling of breast cancer radiotherapy patients and the risk of developing fatigue

Background: Fatigue is commonly reported by cancer patients. In some instances it can persist after treatment is com-pleted. In order to develop effective treatment strategies it is important to understand the mechanisms underlying the development of fatigue and to be able to predict those that may be at greatest risk of experiencing fatigue during and following treatment. The current paper examines predisposing factors for fatigue including altered fatty acid homeosta-sis in a cohort of breast cancer radiotherapy patients. Methodology: Patients had undergone breast-conserving surgery and adjuvant breast irradiation. Prior to radiotherapy the patients were free from significant fatigue. Levels of fatigue were determined prior to and following radiotherapy using the Functional Assessment of Cancer Therapy fatigue sub-scale. Plasma fatty acid levels, urinary and plasma amino acid levels, blood biochemistry factors and general health and lifestyle characteristics were assessed. Results: Following radiotherapy, significant fatigue affected approximately one third of the 26 patients and these subjects were then assigned to the fatigued cohort. Univariate analysis revealed that higher levels of the fatty acids myristic acid and eicosadienoic acid were present for the fatigued cohort prior to radio-therapy. Multivariate analysis also revealed that fatty acid homeostasis was altered between the fatigued and non-fatigued groups at baseline. Orthogonal partial least squares discriminant analysis of the general health, lifestyle and metabolic data revealed that the fatigued and non-fatigued patients could be clustered into two clearly separate groups. Conclusions: The results supported the proposition that the fatigued patients had an underlying metabolic ho-meostasis which may predispose them to the development of fatigue. Biochemical and general health profiling of breast cancer patients has the potential to identify those at most risk of developing significant fatigue following radiotherapy

Reply to Westaway and Lyman: emus, dingoes, and archaeology’s role in conservation biology

In a curious comment on our PNAS Perspective, Westaway and Lyman offer two Australian zooarchaeological case studies—one involving eggshells and the other dingoes—that they argue undercut one of our main points: that archaeological data and deep time perspectives have much to offer conservation biology. Neither example provides a specific substantive critique of our perspective: there are no dingoes in our article, no eggshells, and we mention the long and rich record of human management and alteration of Australian environments only briefly. Nor do we suggest that all archaeological assemblages can effectively inform current conservation biology efforts. Such datasets obviously vary in their quality and potential applicability to modern situations. When considered more closely, both of Westaway and Lyman’s case studies underscore rather than undercut the importance of archaeological and paleoecological data in conservation biology initiatives

Using Geological Facies to Estimate Chromate Sorption to Soils

Quantifying the extent to which contaminant metals bind to subsurface soils is important for risk assessment, the tendency for a contaminant to migrate, and developing environmental remediation strategies. Unfortunately, subsurface soils vary widely in their composition, which in turn affect their tendency to bind metals. The hypothesis of this study was predicated on how a better understanding of geological facies would reduce uncertainty associated with predicting contaminant metal sorption. Facies are layers of sediment deposited in the subsurface due to similar depositional conditions, including energy of an overlying waterway. As such, facies are expected to have similar assemblages of minerals, particle size distributions, origins of organic matter, and similar microbial population structures. These are all important factors affecting contaminant metal sorption. The approach of this study was to collect 42 composite soil samples from a 5 m by 1.5 m grid outcrop in Graniteville, South Carolina and five end-member facies samples. The fraction of each of the five facies comprising the 42 composite soil samples were estimated. Particle size distribution (gravel, sand, silt, and clay fractions), pH, organic matter (OM), iron coating content, and microbial colony forming units were determined for each composite soil and the five end-member facies soils. Because hexavalent chromium (Cr) is the most common contaminant metal in the U.S. to exceed drinking water limits, this highly toxic and soluble metal was used as a model contaminant to provide a measure of contaminant sorption. Chromium distribution coefficients (Kd = Crsoil/Crwater) were measured. Significant correlations were identified between several soil chemical and microbial properties. A significant correlation (r = 0.423; p ≤ 0.05, d.f. = 47) was also determined between measured Kd values and Kd values calculated based on knowledge of facies Kd values. Importantly, the calculated values were characterized by large amount of inherent error. Additional work is needed to determine the applicability of this approach for remediation of contaminated sites and how best to identify appropriate facies for this novel application

Comparing the dynamics of party leadership survival in Britain and Australia: Brown, Rudd and Gillard

This article examines the interaction between the respective party structures of the Australian Labor Party and the British Labour Party as a means of assessing the strategic options facing aspiring challengers for the party leadership. Noting the relative neglect within the scholarly literature on examining forced exits that occur; and attempted forced exits that do not occur, this article takes as its case study the successful forced exits of Kevin Rudd and Julia Gillard, and the failure to remove Gordon Brown. In doing so the article challenges the prevailing assumption that the likely success of leadership evictions are solely determined by the leadership procedures that parties adopt. Noting the significance of circumstances and party cultures, the article advances two scenarios through which eviction attempts can be understood: first, forced exits triggered through the activation of formal procedures (Rudd and Gillard); second, attempts to force an exit by informal pressures outside of the formal procedures which are overcome by the incumbent (Brown)

Trends in serotypes and sequence types among cases of invasive pneumococcal disease in Scotland, 1999-2010.

INTRODUCTION: The 7-valent pneumococcal conjugate vaccine (Prevenar(®), Wyeth; PCV7) was introduced to the UK paediatric immunisation schedule in 2006. This study investigates trends in serotypes and multi locus sequence types (STs) among cases of invasive pneumococcal disease (IPD) in Scotland prior to, and following, the introduction of PCV7. METHODS: Scottish Invasive Pneumococcal Disease Enhanced Surveillance has records of all cases of IPD in Scotland since 1999. Cases diagnosed from blood or cerebrospinal fluid isolates until 2010 were analysed. Logistic and poisson regression modelling was used to assess trends prior to and following the introduction of PCV7. RESULTS: Prior to PCV7 use, on average 650 cases of IPD were reported each year; 12% occurred in those aged <5 years and 35% affected those aged over 65 years. Serotypes in PCV7 represented 47% of cases (68% in <5 year olds). The serotype and ST distribution was relatively stable with only serotype 1 and associated ST 306 showing an increasing trend. PCV7 introduction was associated with a 69% (95% CI: 50%, 80%) reduction in the incidence of IPD among those aged <5 years, a 57% (95% CI: 47%, 66%) reduction among those aged 5-64 years but no significant change among those aged 65 years and over where increases in non-PCV7 serotypes were observed. Serotypes which became more prevalent post-PCV7 are those which were associated with STs related to the PCV7 serotypes. CONCLUSIONS: Routine serotyping and sequence typing in Scotland allowed the assessment of the relationship between the capsule and the clones in the post vaccination era. Changes in the distribution of serotypes post PCV7 introduction appear to be driven by associations between serotypes and STs prior to PCV7 introduction. This has implications for the possible effects of the introduction of higher valency vaccines and could aid in predicting replacement serotypes in IPD

The influence of legislators’ endorsements in party leadership elections

In the 2010 election for the post of leader of the British Labour party, almost all members of parliament endorsed one of five leadership candidates. I investigate the effect of these endorsements on the votes cast for candidates in each Westminster constituency. I find that an MP’s endorsement caused an average increase of 7.5 percentage points in the vote share of the endorsed candidate in that MP’s constituency

Reconsidering domestication from a process archaeology perspective

Process philosophy offers a metaphysical foundation for domestication studies. This grounding is especially important given the European colonialist origin of ‘domestication’ as a term and 19th century cultural project. We explore the potential of process archaeology for deep-time investigation of domestication relationships, drawing attention to the variable pace of domestication as an ongoing process within and across taxa; the nature of domestication ‘syndromes’ and ‘pathways’ as general hypotheses about process; the importance of cooperation as well as competition among humans and other organisms; the significance of non-human agency; and the ubiquity of hybrid communities that resist the simple wild/domestic dichotomy