Linear Support Vector Machines for Error Correction in Optical Data Transmission

Reduction of bit error rates in optical transmission systems is an important task that is difficult to achieve. As speeds increase, the difficulty in reducing bit error rates also increases. Channels have differing characteristics, which may change over time, and any error correction employed must be capable of operating at extremely high speeds. In this paper, a linear support vector machine is used to classify large-scale data sets of simulated optical transmission data in order to demonstrate their effectiveness at reducing bit error rates and their adaptability to the specifics of each channel. For the classification, LIBLINEAR is used, which is related to the popular LIBSVM classifier. It is found that is possible to reduce the error rate on a very noisy channel to about 3 bits in a thousand. This is done by a linear separator that can be built in hardware and can operate at the high speed required of an operationally useful decode

Using Simple Neural Networks to Correct Errors in Optical Data Transmission.

We have demonstrated the applicability of neural-network-based systems to the problem of reducing the effects of signal distortion, and shown that such a system has the potential to reduce the bit-error-rate in the digitized version of the analogue electrical signal derived from an optical data stream by a substantial margin over existing techniques

Higgsing M2-brane theories

Accepted versio

High floc strength with aged polyelectrolytes

The ageing of powdered polyelectrolyte solutions has shown that while the viscosity of these solutions decreases rapidly with time, the flocculation performance and the strength of the flocs produced does not alter over periods >200 days. This was shown for polyacrylamides of cationic, anionic and non-ionic charge. The use of tap or deionized water did not adversely affect the results unless a biocide capable of associating with the polyelectrolyte was added. These results contradict the common belief that solutions made with powdered polyelectrolytes should not be stored for long periods of time as their performance decreases after being stored for several days. The results indicate that powdered polyelectrolyte solutions are suitable for intermittent process operations, such as sewer overflow treatment and that dosing and handling of the solutions can be made easier by ageing of the solutions

Factors related to discontinued clinic attendance by patients with podoconiosis in southern Ethiopia: a qualitative study

Background Podoconiosis is a lymphoedema of non-infectious cause which results in long-term ill health in affected individuals. Simple, effective treatment is available in certain parts of Ethiopia, but evidence indicates that not all patients continue collecting treatment supplies from clinic sites once started. We used qualitative techniques to explore factors related to discontinued attendance at outreach clinics of a non-government organization in southern Ethiopia. Methods A cross-sectional qualitative study was conducted in four clinic sites through unstructured in-depth interviews, key informant interviews and focus group discussions with the involvement of 88 study subjects. Results Discontinuation of clinic visits is common among podoconiosis patients. The reasons were: remoteness from the clinic sites, unrealistic expectation of ‘special’ aid, worry about increasing stigma, illness and misconceptions about treatment. Conclusions Several of these factors are remediable through community and individual information and education. Appropriate routes to deliver this information must be identified. Certain factors (such as distance to clinic sites and stigma) require substantial expansion of services or liaison with village-level government health services

Dual positive and negative regulation of GPCR signaling by GTP hydrolysis

G protein-coupled receptors (GPCRs) regulate a variety of intracellular pathways through their ability to promote the binding of GTP to heterotrimeric G proteins. Regulator of G protein signaling (RGS) proteins increase the intrinsic GTPase activity of G-subunits and are widely regarded as negative regulators of G protein signaling. Using yeast we demonstrate that GTP hydrolysis is not only required for desensitization, but is essential for achieving a high maximal (saturated level) response. Thus RGS-mediated GTP hydrolysis acts as both a negative (low stimulation) and positive (high stimulation) regulator of signaling. To account for this we generated a new kinetic model of the G protein cycle where GGTP enters an inactive GTP-bound state following effector activation. Furthermore, in vivo and in silico experimentation demonstrates that maximum signaling output first increases and then decreases with RGS concentration. This unimodal, non-monotone dependence on RGS concentration is novel. Analysis of the kinetic model has revealed a dynamic network motif that shows precisely how inclusion of the inactive GTP-bound state for the G produces this unimodal relationship

Relational lattices via duality

The natural join and the inner union combine in different ways tables of a relational database. Tropashko [18] observed that these two operations are the meet and join in a class of lattices-called the relational lattices- and proposed lattice theory as an alternative algebraic approach to databases. Aiming at query optimization, Litak et al. [12] initiated the study of the equational theory of these lattices. We carry on with this project, making use of the duality theory developed in [16]. The contributions of this paper are as follows. Let A be a set of column's names and D be a set of cell values; we characterize the dual space of the relational lattice R(D, A) by means of a generalized ultrametric space, whose elements are the functions from A to D, with the P (A)-valued distance being the Hamming one but lifted to subsets of A. We use the dual space to present an equational axiomatization of these lattices that reflects the combinatorial properties of these generalized ultrametric spaces: symmetry and pairwise completeness. Finally, we argue that these equations correspond to combinatorial properties of the dual spaces of lattices, in a technical sense analogous of correspondence theory in modal logic. In particular, this leads to an exact characterization of the finite lattices satisfying these equations.Comment: Coalgebraic Methods in Computer Science 2016, Apr 2016, Eindhoven, Netherland

Ribosomal DNA sequence heterogeneity reflects intraspecies phylogenies and predicts genome structure in two contrasting yeast species

The ribosomal RNA encapsulates a wealth of evolutionary information, including genetic variation that can be used to discriminate between organisms at a wide range of taxonomic levels. For example, the prokaryotic 16S rDNA sequence is very widely used both in phylogenetic studies and as a marker in metagenomic surveys and the internal transcribed spacer region, frequently used in plant phylogenetics, is now recognized as a fungal DNA barcode. However, this widespread use does not escape criticism, principally due to issues such as difficulties in classification of paralogous versus orthologous rDNA units and intragenomic variation, both of which may be significant barriers to accurate phylogenetic inference. We recently analyzed data sets from the Saccharomyces Genome Resequencing Project, characterizing rDNA sequence variation within multiple strains of the baker's yeast Saccharomyces cerevisiae and its nearest wild relative Saccharomyces paradoxus in unprecedented detail. Notably, both species possess single locus rDNA systems. Here, we use these new variation datasets to assess whether a more detailed characterization of the rDNA locus can alleviate the second of these phylogenetic issues, sequence heterogeneity, while controlling for the first. We demonstrate that a strong phylogenetic signal exists within both datasets and illustrate how they can be used, with existing methodology, to estimate intraspecies phylogenies of yeast strains consistent with those derived from whole-genome approaches. We also describe the use of partial Single Nucleotide Polymorphisms, a type of sequence variation found only in repetitive genomic regions, in identifying key evolutionary features such as genome hybridization events and show their consistency with whole-genome Structure analyses. We conclude that our approach can transform rDNA sequence heterogeneity from a problem to a useful source of evolutionary information, enabling the estimation of highly accurate phylogenies of closely related organisms, and discuss how it could be extended to future studies of multilocus rDNA systems. [concerted evolution; genome hydridisation; phylogenetic analysis; ribosomal DNA; whole genome sequencing; yeast]

A research pathway for experimental psychopathology: the role of external validity criteria

This paper outlines a putative pathway for experimental psychopathology research developing psychological models of clinical disorders. The pathway uses established external validity criteria to define the pathway and clarifies the important role that research conducted on healthy participants can play in our understanding of clinical disorders. Defining a research pathway for experimental psychopathology in this way has a number of benefits It would (1) make explicit the need to address the external validity of developed models, (2) provide a clear set of criteria that would be required to extend research on healthy individuals to diagnostic populations, and (3) recommend using general psychological knowledge when developing models of psychopathology

Calabi-Yau Orbifolds and Torus Coverings

The theory of coverings of the two-dimensional torus is a standard part of algebraic topology and has applications in several topics in string theory, for example, in topological strings. This paper initiates applications of this theory to the counting of orbifolds of toric Calabi-Yau singularities, with particular attention to Abelian orbifolds of C^D. By doing so, the work introduces a novel analytical method for counting Abelian orbifolds, verifying previous algorithm results. One identifies a p-fold cover of the torus T^{D-1} with an Abelian orbifold of the form C^D/Z_p, for any dimension D and a prime number p. The counting problem leads to polynomial equations modulo p for a given Abelian subgroup of S_D, the group of discrete symmetries of the toric diagram for C^D. The roots of the polynomial equations correspond to orbifolds of the form C^D/Z_p, which are invariant under the corresponding subgroup of S_Ds. In turn, invariance under this subgroup implies a discrete symmetry for the corresponding quiver gauge theory, as is clearly seen by its brane tiling formulation.Comment: 33 pages, 5 figures, 7 tables; version published on JHE